genome.fa.s6.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  98  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29496165--29496242	40	1.9	42	89	5	124	51	0	1	47	1.09
29509281--29509499	115	1.9	115	89	3	343	22	15	11	50	1.76
29512826--29512891	33	2.0	32	82	2	78	36	7	15	40	1.75
29515938--29516089	78	1.9	78	98	0	295	35	19	4	40	1.73
29522897--29522960	30	2.1	29	83	11	76	56	9	1	32	1.41
29524231--29524277	24	2.0	24	95	0	85	25	12	6	55	1.61
29524239--29524293	24	2.3	24	87	0	74	27	14	9	49	1.73
29525120--29525441	162	2.0	162	95	0	572	28	14	23	33	1.94
29530241--29530709	238	2.0	239	89	2	730	26	12	16	44	1.84
29557547--29557577	16	1.9	16	93	0	53	22	12	16	48	1.80
29566608--29566661	27	2.0	28	82	10	67	37	27	7	27	1.84
29568961--29569026	28	2.3	29	77	12	75	42	0	3	54	1.15
29571753--29571842	31	2.9	31	77	6	85	45	2	7	44	1.45
29579394--29579724	166	2.0	164	95	1	590	31	15	18	34	1.92
29581053--29581112	31	1.9	32	86	10	88	50	5	3	41	1.41
29581527--29581561	16	2.3	15	90	9	54	31	0	0	68	0.90
29581929--29581974	24	1.9	24	86	0	65	50	10	13	26	1.74
29584324--29584375	26	2.0	26	84	0	68	32	0	7	59	1.26
29584546--29584587	7	5.4	8	81	13	52	23	0	21	54	1.44
29584514--29584697	14	12.2	15	68	16	69	25	0	23	50	1.53
29584546--29584586	16	2.6	16	92	3	66	24	0	21	53	1.46
29584546--29584595	15	3.3	15	78	18	50	24	0	22	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29584653--29584699	21	2.2	21	85	7	60	25	0	27	46	1.53
29587234--29587274	3	13.7	3	100	0	82	34	0	0	65	0.93
29587728--29587785	30	2.0	30	89	3	91	55	10	6	27	1.59
29587911--29587964	26	2.0	26	86	10	74	57	12	0	29	1.36
29590219--29590279	3	20.3	3	96	0	86	60	6	0	32	1.22
29590488--29590534	24	2.0	24	87	4	69	31	12	14	40	1.84
29591135--29591407	84	3.2	83	84	2	323	37	17	19	26	1.93
29591135--29591418	42	6.7	42	77	2	237	37	17	19	25	1.93
29591838--29591895	3	19.3	3	96	0	107	65	1	0	32	1.03
29592428--29592480	20	2.7	19	80	8	61	32	18	15	33	1.92
29594686--29594741	2	28.0	2	100	0	112	50	0	50	0	1.00
29608430--29608499	34	2.1	34	86	0	95	34	8	42	14	1.76
29611172--29611414	88	2.8	85	85	4	326	38	17	9	34	1.81
29611520--29611558	14	2.9	13	88	7	60	74	0	0	25	0.82
29611547--29611638	10	9.4	9	73	12	67	64	2	1	32	1.13
29611545--29611626	19	4.3	19	80	4	76	62	2	1	34	1.16
29611574--29611638	9	6.8	9	76	13	67	67	3	0	29	1.05
29611576--29611668	29	3.2	30	78	3	100	64	4	2	29	1.24
29611576--29611646	10	7.2	10	82	7	74	66	2	1	29	1.15
29611842--29611901	19	3.2	20	76	11	63	26	5	5	63	1.36
29611842--29611901	18	3.2	19	78	7	59	26	5	5	63	1.36
29611886--29611912	11	2.5	11	100	0	54	18	14	7	59	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29612071--29612235	91	1.9	88	83	10	219	32	11	19	36	1.88
29612063--29612317	91	2.8	87	76	11	217	32	10	18	38	1.85
29617373--29617407	14	2.6	14	90	4	54	42	0	0	57	0.99
29617374--29617407	13	2.7	12	83	16	50	41	0	0	58	0.98
29617895--29617919	12	2.1	12	100	0	50	76	8	0	16	1.02
29618684--29618708	8	3.1	8	100	0	50	72	0	0	28	0.86
29619225--29619288	8	6.8	9	79	12	51	65	1	1	31	1.11
29624120--29624155	14	2.5	15	90	4	56	13	0	8	77	0.98
29631260--29631291	16	2.0	16	100	0	64	18	18	25	37	1.94
29634542--29634600	6	9.8	6	83	7	66	15	3	33	47	1.62
29636574--29636643	28	2.6	25	79	14	77	48	11	20	20	1.79
29637738--29637768	7	4.3	7	95	4	53	29	3	0	67	1.06
29637743--29637776	14	2.4	14	90	0	50	29	0	2	67	1.05
29641659--29641730	38	1.9	37	94	2	126	50	1	1	47	1.18
29641938--29641975	16	2.4	17	82	13	53	31	28	2	36	1.71
29643778--29643821	23	1.9	23	86	9	63	70	9	4	15	1.30
29647399--29647440	18	2.2	20	91	8	70	26	4	2	66	1.23
29647435--29647502	20	3.2	20	81	18	77	30	0	1	67	0.99
29647406--29647526	58	2.0	60	80	16	137	33	0	2	63	1.13
29647432--29647526	15	6.4	15	73	23	69	34	0	2	63	1.07
29647432--29647541	58	1.9	57	82	14	136	31	0	2	65	1.07
29647619--29647659	22	1.9	22	90	5	66	26	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29666381--29666409	3	9.7	3	100	0	58	68	0	31	0	0.89
29667601--29667744	57	2.5	59	80	9	147	60	2	3	34	1.25
29674474--29674505	7	4.9	7	85	14	50	59	0	40	0	0.97
29674471--29674505	12	2.9	12	91	8	54	60	0	40	0	0.97
29677599--29677645	20	2.3	20	81	0	58	36	21	6	36	1.79
29682036--29682077	12	3.6	12	77	6	50	40	21	14	23	1.90
29682031--29682100	23	3.0	23	85	2	95	41	18	11	28	1.85
29682899--29682956	29	2.0	29	83	6	73	46	12	8	32	1.71
29692639--29692672	17	2.0	17	88	0	50	58	0	0	41	0.98
29698773--29698812	20	2.0	20	95	0	71	57	5	2	35	1.34
29711036--29711068	17	2.0	17	88	5	50	30	3	3	63	1.24
29712827--29712860	15	2.3	15	94	0	59	52	2	0	44	1.16
29714276--29714308	13	2.4	14	80	10	50	39	0	0	60	0.97
29714530--29714568	20	2.0	20	84	0	51	64	5	0	30	1.15
29718985--29719032	21	2.2	22	88	3	71	62	2	29	6	1.31
29724808--29724863	17	3.2	16	83	16	60	76	8	0	14	1.00
29724819--29724871	17	3.2	16	81	5	61	75	11	0	13	1.05
29725458--29725505	17	2.9	16	82	17	62	29	0	2	68	1.01
29725465--29725506	17	2.4	18	92	4	68	28	0	2	69	1.01
29727195--29727219	2	12.5	2	100	0	50	0	48	0	52	1.00
29731565--29731615	20	2.6	21	76	14	56	52	0	1	45	1.12
29747363--29747399	17	2.2	17	90	0	56	45	24	13	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29759245--29759271	11	2.5	11	100	0	54	55	0	0	44	0.99
29760403--29760463	14	4.4	14	73	6	52	29	1	1	67	1.10
29760723--29760773	18	2.8	18	78	0	57	58	1	0	39	1.09
29760679--29760758	24	3.4	22	77	16	63	62	1	2	33	1.16
29760683--29760759	23	3.3	21	76	16	64	61	1	2	35	1.18
29761484--29761651	92	1.8	92	83	7	225	29	7	7	55	1.56
29761862--29761904	18	2.3	19	84	12	61	46	0	0	53	1.00
29761869--29761904	18	2.0	18	94	0	63	47	0	0	52	1.00
29763328--29763374	25	1.9	25	82	4	60	61	10	6	21	1.50
29765770--29765796	5	5.4	5	100	0	54	62	37	0	0	0.95
29771055--29771125	33	2.1	35	84	10	94	42	9	5	42	1.61
29771672--29771707	18	2.0	18	94	0	63	55	0	2	41	1.14
29773608--29773662	20	2.7	20	83	16	76	67	0	5	27	1.12
29773620--29773710	28	3.2	29	70	13	80	62	2	4	30	1.27
29773621--29773728	20	5.6	20	69	19	61	62	1	5	29	1.28
29773937--29774029	9	9.8	9	68	14	53	33	2	3	61	1.24
29773915--29773991	19	4.1	19	75	8	68	27	3	5	63	1.33
29773927--29774058	38	3.5	40	83	10	154	33	1	3	62	1.20
29773938--29773999	19	3.3	19	73	8	72	32	3	3	61	1.28
29774162--29774414	88	3.0	87	78	13	226	42	7	12	37	1.70
29774678--29774709	5	6.8	5	86	13	50	84	0	15	0	0.63
29775221--29775256	2	18.0	2	94	0	63	0	47	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29781048--29781085	2	19.0	2	100	0	76	0	50	0	50	1.00
29803134--29803173	17	2.3	17	91	4	62	72	10	2	15	1.21
29805431--29805464	15	2.3	15	100	0	68	47	26	14	11	1.79
29813931--29813961	15	2.1	15	93	0	53	32	12	16	38	1.86
29816197--29816221	12	2.1	12	100	0	50	64	0	0	36	0.94
29816251--29816294	21	2.0	24	82	13	58	0	27	2	70	0.99
29819588--29819617	14	2.1	14	93	0	51	46	13	0	40	1.43
29828638--29828731	44	2.2	42	82	16	106	31	6	24	37	1.81
29828817--29828950	55	2.3	57	89	6	200	50	0	0	47	1.11
29838169--29838220	17	2.8	18	77	11	52	40	0	1	57	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125