genome.fa.s6.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  118  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36925455--36925831	30	12.8	29	72	12	218	32	22	2	42	1.67
36925670--36925915	56	4.3	57	80	9	245	30	26	3	39	1.72
36925446--36925831	86	4.4	86	73	13	213	32	22	2	42	1.68
36925667--36925915	29	8.7	29	70	16	123	29	26	3	40	1.72
36926873--36927042	59	2.9	57	83	6	196	51	9	13	25	1.71
36929290--36929314	3	8.3	3	100	0	50	36	0	0	64	0.94
36929705--36929737	14	2.4	14	90	10	50	48	6	6	39	1.53
36930275--36930327	19	2.7	19	80	11	56	47	0	11	41	1.39
36931416--36931473	30	1.9	31	82	3	73	44	0	1	53	1.10
36931721--36931771	21	2.4	21	81	15	61	62	5	5	25	1.41
36936468--36936535	31	2.2	31	91	0	109	35	10	11	42	1.76
36938465--36938489	11	2.3	11	100	0	50	44	0	28	28	1.55
36957320--36957344	13	1.9	13	100	0	50	32	0	12	56	1.36
36958071--36958111	20	2.0	20	85	4	55	60	4	0	34	1.18
36958136--36958168	16	1.9	18	88	11	52	45	0	0	54	0.99
36958652--36958688	4	9.8	4	82	11	51	18	2	0	78	0.87
36959887--36959916	2	15.0	2	100	0	60	50	0	0	50	1.00
36960004--36960049	15	2.9	16	84	12	60	47	0	0	52	1.00
36964391--36964436	15	2.9	16	84	12	60	47	0	0	52	1.00
36966041--36966066	10	2.6	10	100	0	52	61	0	0	38	0.96
36969859--36970086	116	2.0	114	85	3	305	22	18	22	36	1.95
36971139--36971165	6	4.5	6	100	0	54	0	48	18	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36978700--36978728	8	3.6	8	100	0	58	41	10	13	34	1.79
36989253--36989314	29	2.1	29	82	11	74	24	12	32	30	1.93
36989416--36989695	30	9.5	29	73	14	207	33	1	25	39	1.66
36989271--36989732	58	7.9	57	74	10	272	35	3	24	36	1.72
36991708--36991808	17	6.0	16	83	5	69	54	2	1	40	1.27
36991720--36991808	17	5.2	17	86	0	115	57	3	1	38	1.23
36993634--36993663	15	2.0	15	100	0	60	33	20	13	33	1.91
36995479--36995677	60	3.4	58	70	9	170	37	4	29	28	1.77
36995652--36995942	30	9.7	30	86	3	340	36	3	23	36	1.72
36995641--36995942	89	3.4	86	79	12	301	36	3	23	36	1.72
36995649--36995957	119	2.6	117	83	10	367	36	3	23	35	1.73
36997850--36997928	6	13.5	6	74	10	65	50	3	2	43	1.33
37001004--37001089	11	7.1	13	71	18	53	44	0	4	51	1.22
37001004--37001103	6	16.8	6	74	16	66	47	0	4	49	1.20
37001025--37001097	11	6.5	11	73	14	51	47	0	4	47	1.21
37001040--37001103	18	3.8	17	89	6	94	54	0	4	40	1.21
37007165--37007189	11	2.3	11	100	0	50	68	0	8	24	1.16
37024086--37024125	20	2.0	21	90	5	64	15	30	5	50	1.65
37038380--37038415	11	3.0	13	84	15	51	55	0	0	44	0.99
37044580--37044609	9	3.3	9	100	0	60	23	0	10	66	1.21
37047146--37047180	18	1.9	18	94	0	61	40	0	0	60	0.97
37053643--37053681	21	2.0	21	85	10	55	53	2	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37059886--37059938	14	4.1	14	77	22	71	45	37	5	11	1.64
37059896--37059942	23	2.0	23	100	0	94	42	44	4	8	1.54
37062827--37062869	20	2.3	19	80	8	52	55	0	0	44	0.99
37065227--37065354	61	2.1	61	88	5	188	28	18	16	35	1.93
37065262--37065446	97	1.9	96	87	3	275	28	23	16	30	1.96
37065323--37065388	34	1.9	34	87	6	98	24	31	19	24	1.98
37065357--37065497	60	2.3	63	85	6	191	33	21	14	29	1.94
37065826--37066123	83	3.6	83	94	0	515	39	5	3	51	1.44
37066220--37066272	20	2.5	20	80	14	54	32	37	5	24	1.79
37066289--37066326	20	1.9	20	88	0	58	13	26	21	39	1.89
37068072--37068105	12	2.8	12	86	0	50	35	44	17	2	1.64
37068543--37068634	30	3.1	30	83	9	91	26	6	4	63	1.38
37069429--37069704	62	4.5	61	87	5	380	34	16	21	27	1.95
37069428--37069704	123	2.3	123	88	5	402	34	16	21	27	1.95
37071035--37071108	36	2.1	35	85	7	96	28	9	10	51	1.68
37070994--37071600	153	4.0	153	86	6	837	27	13	13	45	1.80
37078263--37078319	27	2.1	27	84	12	73	7	14	3	75	1.14
37082250--37082915	221	3.0	221	95	1	1190	27	18	18	35	1.94
37087281--37087334	25	2.2	25	83	6	65	31	0	5	62	1.18
37087986--37088045	22	2.7	23	76	2	68	45	5	1	48	1.34
37088086--37088125	17	2.3	18	87	8	57	72	5	2	20	1.15
37089016--37089053	7	5.6	7	90	3	51	71	2	0	26	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37090177--37090268	41	2.3	42	78	16	104	35	3	2	58	1.26
37111655--37111710	29	1.9	29	92	0	94	67	1	1	28	1.10
37111655--37111724	29	2.4	29	85	7	88	68	2	1	27	1.12
37116685--37116710	8	3.2	8	100	0	52	11	50	0	38	1.39
37118523--37118584	31	2.0	31	100	0	124	25	12	19	41	1.87
37135650--37135913	132	2.0	132	93	0	447	39	24	12	24	1.90
37138020--37138061	22	2.0	21	85	4	57	19	30	2	47	1.62
37142705--37142739	15	2.3	15	90	5	52	54	0	0	45	0.99
37142693--37142742	25	2.2	21	82	13	55	56	0	4	40	1.18
37142718--37142773	25	2.4	25	82	8	64	60	1	0	37	1.07
37152232--37152293	31	2.0	31	93	0	106	29	8	24	38	1.84
37155849--37155882	3	11.3	3	87	0	50	61	0	5	32	1.20
37167498--37167551	25	2.1	26	90	10	85	35	0	0	64	0.94
37173837--37173878	17	2.5	17	82	14	52	16	11	0	71	1.14
37179495--37179573	32	2.7	30	78	16	78	68	0	7	24	1.15
37179464--37179579	10	12.4	9	69	18	51	68	1	6	23	1.23
37179776--37179833	10	6.1	10	76	9	59	29	1	1	67	1.11
37179775--37179904	28	4.5	27	76	17	111	33	2	1	63	1.17
37179776--37179880	20	5.3	19	72	11	68	33	1	0	63	1.11
37179866--37179926	20	3.1	19	72	13	52	27	3	3	65	1.24
37183023--37183055	15	2.1	17	88	11	52	63	0	0	36	0.95
37190719--37190748	15	2.0	15	93	0	51	33	23	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37204581--37204665	42	2.0	43	88	2	127	31	14	10	43	1.79
37209207--37209242	16	2.2	16	95	0	63	27	19	33	19	1.96
37223915--37223964	22	2.3	22	82	6	66	48	2	0	50	1.12
37224592--37224647	21	2.8	20	84	10	69	28	1	19	50	1.58
37236229--37236275	24	2.0	24	91	4	78	46	17	10	25	1.79
37238212--37238236	11	2.3	11	100	0	50	24	40	8	28	1.83
37241015--37241062	20	2.6	18	84	15	62	70	0	0	29	0.87
37241015--37241062	10	5.1	9	78	16	53	70	0	0	29	0.87
37268641--37268670	14	2.1	14	93	0	51	3	26	0	70	1.03
37268960--37269032	3	24.3	3	94	0	92	0	42	0	57	0.98
37269298--37269349	27	1.9	27	84	7	70	26	3	5	63	1.34
37269426--37269534	53	2.1	53	100	0	218	30	7	5	56	1.49
37269426--37269505	25	3.1	25	72	10	88	28	5	6	60	1.43
37269442--37269533	28	3.4	28	76	8	118	29	8	4	57	1.48
37272144--37272252	20	5.4	20	88	0	119	18	15	29	36	1.92
37272144--37272268	20	6.2	20	86	7	96	18	15	31	35	1.92
37272163--37272275	40	2.8	39	79	11	113	15	14	31	38	1.88
37272163--37272276	20	5.7	21	86	7	98	15	14	31	37	1.89
37274800--37274913	52	2.2	52	95	0	201	21	16	19	42	1.89
37276968--37277027	31	1.9	31	89	0	93	31	6	8	53	1.57
37277666--37277714	20	2.7	18	76	14	55	48	0	2	48	1.12
37281076--37281113	20	1.9	20	88	0	58	57	5	0	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37281952--37281979	14	2.0	14	100	0	56	85	0	14	0	0.59
37291534--37291993	226	2.0	226	99	0	911	27	23	14	35	1.93
37292907--37292997	42	2.2	42	95	0	164	28	29	15	26	1.96
37292979--37293012	15	2.3	15	94	0	59	26	35	8	29	1.87
37292937--37293054	57	2.1	57	95	0	209	30	31	11	26	1.92
37292907--37293096	99	1.9	99	92	0	317	31	31	12	25	1.93
37292994--37293175	42	4.3	42	94	0	274	32	30	12	24	1.92
37298033--37298086	26	2.1	26	100	0	108	37	29	0	33	1.58
37301752--37301797	16	2.8	16	86	3	56	41	2	0	56	1.11
37301768--37301804	6	6.3	6	87	6	58	45	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125