genome.fa.s6.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  101  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30442410--30442520	23	4.8	23	86	0	150	41	25	18	14	1.89
30442407--30442532	23	5.5	22	81	6	135	44	23	17	14	1.85
30445543--30445582	19	2.1	19	90	0	62	15	15	12	57	1.66
30449002--30449027	3	8.7	3	100	0	52	30	0	0	69	0.89
30457725--30457760	18	2.0	18	88	0	54	30	2	19	47	1.64
30457725--30457757	16	2.2	15	89	10	50	30	3	18	48	1.63
30463206--30463270	2	32.5	2	100	0	130	49	0	0	50	1.00
30467264--30467309	19	2.2	21	88	11	69	52	4	0	43	1.21
30467317--30467371	26	2.1	27	86	3	76	65	5	0	29	1.15
30468704--30468764	31	1.9	32	83	3	79	40	16	13	29	1.86
30468817--30468845	10	2.7	11	94	5	51	24	0	0	75	0.80
30475282--30475361	23	3.5	22	81	3	88	37	27	21	13	1.91
30475356--30475402	23	2.0	23	87	0	67	46	19	23	10	1.80
30478291--30478327	18	2.1	18	100	0	74	24	5	27	43	1.76
30482909--30483094	95	1.9	96	84	7	245	37	15	17	30	1.91
30483474--30483637	57	2.8	56	78	5	175	34	5	25	35	1.79
30483424--30483637	116	1.8	116	81	5	263	35	5	24	35	1.78
30483623--30483678	29	1.9	29	85	7	78	33	3	26	35	1.74
30485553--30485611	6	10.3	6	73	10	52	54	0	1	44	1.10
30485553--30485633	17	4.7	17	84	3	99	53	2	2	41	1.27
30495246--30495294	19	2.5	19	78	15	55	18	8	16	57	1.63
30495243--30495294	21	2.7	20	76	11	54	21	7	15	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30495641--30495690	20	2.5	20	90	0	73	40	4	2	54	1.31
30495627--30495710	17	4.8	17	75	13	64	46	2	1	50	1.22
30497693--30497723	14	2.2	14	100	0	62	19	12	35	32	1.90
30499843--30499867	3	8.3	3	100	0	50	36	0	32	32	1.58
30500922--30500987	33	2.0	32	82	11	80	50	31	0	18	1.47
30502507--30502546	2	20.0	2	100	0	80	50	0	0	50	1.00
30503000--30503044	20	2.2	21	77	18	51	42	2	6	48	1.41
30503101--30503139	19	2.1	18	90	4	60	61	2	0	35	1.10
30503432--30503506	27	2.7	27	81	8	89	46	12	2	38	1.55
30503461--30503511	20	2.6	19	77	17	59	49	11	1	37	1.51
30510127--30510151	2	12.5	2	100	0	50	52	0	0	48	1.00
30526851--30527023	89	1.9	92	90	7	282	31	14	11	42	1.81
30532176--30532226	21	2.4	22	83	9	61	50	7	5	35	1.55
30534075--30534114	21	1.9	21	84	0	53	80	5	10	5	1.02
30546739--30546764	6	4.3	6	100	0	52	30	50	0	19	1.48
30548766--30548829	19	3.2	19	80	13	67	50	6	1	42	1.37
30554931--30554980	24	2.2	21	82	10	55	54	0	0	46	1.00
30566554--30566582	6	4.8	6	100	0	58	34	17	0	48	1.47
30569802--30569842	11	3.5	12	83	12	50	75	0	2	21	0.92
30570380--30570422	22	2.0	22	81	9	52	39	0	0	60	0.97
30570382--30570431	15	3.3	15	80	5	57	36	0	0	64	0.94
30571961--30571999	4	9.8	4	94	0	51	41	25	7	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30572180--30572219	16	2.3	18	83	8	57	20	5	5	70	1.26
30572290--30572330	22	1.9	21	90	5	64	60	4	0	34	1.18
30575935--30575967	2	16.5	2	100	0	66	51	0	0	48	1.00
30578434--30578482	13	3.5	13	84	15	55	69	2	0	28	1.00
30578867--30578908	16	2.6	16	81	14	50	30	7	0	61	1.22
30580815--30580867	20	2.8	18	73	15	54	62	5	0	32	1.19
30580826--30580867	20	2.1	20	86	0	57	66	4	0	28	1.12
30590209--30590266	18	3.4	18	88	6	77	29	8	24	37	1.85
30595065--30595147	43	1.9	43	90	0	130	49	7	2	40	1.43
30595882--30595921	12	3.3	13	80	13	50	67	0	2	30	1.04
30600009--30600080	19	3.7	19	80	10	74	40	0	4	55	1.19
30606097--30606134	18	2.1	19	90	5	60	42	10	5	42	1.62
30619393--30619430	6	6.3	6	100	0	76	34	18	15	31	1.92
30635362--30635395	17	2.1	17	88	5	52	52	0	0	47	1.00
30638673--30638721	19	2.6	19	83	0	53	57	8	4	30	1.47
30639880--30639932	27	2.0	26	88	3	79	64	5	1	28	1.27
30648100--30648484	191	2.0	191	100	0	770	24	29	18	27	1.98
30658195--30658221	13	2.1	13	100	0	54	44	14	22	18	1.86
30667792--30667852	30	2.0	30	87	6	88	47	0	1	50	1.10
30667848--30667907	17	3.7	15	81	16	66	63	3	0	33	1.11
30668968--30669016	14	3.1	16	80	17	57	46	0	0	53	1.00
30670982--30671067	39	2.1	41	85	4	113	54	6	3	34	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30672062--30672101	13	2.9	14	85	7	55	27	2	0	70	1.01
30672064--30672107	13	3.3	13	81	6	52	27	2	0	70	0.99
30677815--30677865	21	2.4	21	90	3	75	35	5	3	54	1.43
30677935--30677968	13	2.6	13	80	0	50	8	8	0	82	0.85
30679702--30679727	13	2.0	13	100	0	52	46	15	7	30	1.74
30686550--30686603	17	2.8	20	76	21	62	1	29	5	62	1.28
30686560--30686611	18	2.9	17	80	11	52	1	26	5	65	1.26
30689512--30689626	56	2.1	56	100	0	230	32	17	19	31	1.95
30691479--30692009	123	4.4	118	79	9	393	28	17	16	38	1.91
30691479--30691995	62	8.6	61	78	8	460	27	18	16	38	1.92
30691569--30692010	123	3.7	121	83	7	456	28	17	15	38	1.90
30692800--30692854	17	3.5	17	69	19	55	61	3	10	23	1.44
30692787--30692897	30	3.7	30	85	5	111	63	3	6	26	1.34
30693341--30693371	12	2.6	12	94	0	53	6	16	41	35	1.74
30693387--30693478	12	7.7	12	71	4	51	10	29	34	25	1.90
30693388--30693477	24	3.8	24	75	5	83	10	28	35	25	1.88
30693387--30693455	36	1.9	36	90	0	111	10	27	37	24	1.88
30693379--30693477	36	2.8	36	76	6	110	11	29	33	26	1.91
30694129--30694168	21	2.0	21	90	5	64	62	5	7	25	1.42
30695325--30695957	84	7.5	84	94	0	1070	46	4	5	44	1.46
30696213--30696465	118	2.1	118	86	7	343	35	17	18	28	1.94
30696210--30696463	59	4.3	60	80	6	270	34	17	18	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30697909--30698126	108	2.0	109	88	0	321	31	16	21	30	1.96
30704358--30704561	108	1.9	108	87	3	302	28	19	19	33	1.96
30707549--30707573	11	2.3	11	100	0	50	40	8	16	36	1.77
30713307--30713341	18	1.9	18	88	11	54	68	8	0	22	1.16
30714876--30714930	25	2.2	25	87	6	76	50	1	0	47	1.11
30719765--30719806	7	6.0	7	100	0	84	28	28	28	14	1.95
30729140--30729302	81	2.0	81	100	0	326	23	26	6	42	1.79
30731595--30731629	16	2.2	16	94	0	61	31	20	0	48	1.50
30732635--30732789	80	1.9	79	88	1	229	45	1	8	43	1.45
30739491--30739527	16	2.2	17	90	4	58	67	0	8	24	1.17
30740338--30740399	18	3.3	19	75	16	58	45	1	1	51	1.20
30748395--30748427	17	1.9	17	93	0	57	27	0	0	72	0.85
30753088--30753138	27	1.9	26	88	11	77	47	3	5	43	1.46
30753207--30753242	17	2.1	17	89	0	54	58	2	0	38	1.13
30753579--30753607	6	4.8	6	100	0	58	17	34	0	48	1.47
30754049--30754086	19	2.0	19	85	10	51	36	0	2	60	1.11
30770522--30770579	18	3.1	18	78	14	55	55	1	1	41	1.20
30788325--30788363	20	2.1	18	85	9	51	46	5	5	43	1.48
30802559--30802592	18	1.9	17	88	5	50	47	0	0	52	1.00
30805412--30805466	17	3.3	16	85	12	67	70	1	0	27	0.97
30805396--30805458	27	2.4	26	84	10	83	66	1	0	31	1.01
30805546--30805576	16	1.9	16	93	0	53	35	6	9	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30805855--30805879	2	12.5	2	100	0	50	52	0	0	48	1.00
30806273--30806306	15	2.2	16	89	5	52	2	26	2	67	1.19
30807504--30807546	22	1.9	23	90	4	70	44	0	0	55	0.99
30807501--30807582	38	2.1	39	88	6	121	39	0	1	59	1.05
30807501--30807608	39	2.7	39	81	9	121	38	0	0	59	1.10
30809689--30809732	12	3.5	12	76	11	52	20	18	18	43	1.89
30811003--30811148	58	2.5	58	84	8	190	45	1	0	52	1.14
30811318--30811357	16	2.5	16	88	8	55	27	27	10	35	1.89
30811574--30811609	16	2.2	16	95	0	63	36	8	30	25	1.85
30811595--30811688	44	2.1	46	84	7	122	30	6	26	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125