genome.fa.s6.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  87  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26736815--26736970	59	2.6	59	85	6	183	38	1	21	38	1.64
26736833--26737008	30	5.9	30	79	7	171	36	3	22	37	1.71
26738777--26738899	11	11.0	11	67	15	65	55	5	3	35	1.40
26738776--26738899	6	22.0	6	69	13	50	54	5	3	36	1.40
26738792--26738901	17	6.6	17	80	4	116	57	6	2	33	1.38
26738792--26738901	50	2.2	50	83	6	143	57	6	2	33	1.38
26740250--26740280	16	1.9	16	93	0	53	38	6	29	25	1.81
26740443--26740609	58	2.9	58	83	8	207	52	1	2	43	1.21
26744832--26745115	137	2.1	137	87	4	412	46	3	6	43	1.47
26745091--26745238	75	2.0	75	87	2	217	34	15	5	44	1.69
26747437--26747551	31	3.7	31	80	5	117	46	8	12	32	1.71
26750167--26750221	19	2.7	21	78	18	62	29	5	12	52	1.61
26758341--26758533	100	1.9	101	81	5	237	35	9	15	39	1.80
26759776--26759828	21	2.5	21	96	0	97	33	32	9	24	1.87
26764660--26764835	52	3.4	51	86	4	237	26	14	25	34	1.94
26772131--26772180	21	2.4	21	80	6	57	28	16	26	30	1.96
26775416--26775463	22	2.2	23	77	7	55	50	18	0	31	1.48
26775425--26775466	22	1.9	22	95	0	75	42	23	0	33	1.55
26777170--26777212	10	4.3	10	81	0	59	65	2	0	32	1.06
26777155--26777212	30	1.9	30	85	3	80	62	1	1	34	1.16
26777173--26777223	20	2.8	17	81	18	66	64	1	0	33	1.05
26777474--26777524	9	5.6	9	86	4	57	25	0	3	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26777475--26777576	28	3.5	28	75	9	78	33	0	3	61	1.21
26777670--26777919	88	2.8	88	78	11	265	30	8	19	41	1.80
26788218--26788281	31	2.1	31	88	2	94	40	23	9	26	1.85
26789392--26789466	21	3.5	22	76	5	73	65	17	9	8	1.45
26789477--26789529	24	2.2	24	83	12	65	66	28	5	0	1.15
26792726--26792771	20	2.3	20	92	3	76	30	26	2	41	1.68
26794174--26794250	21	3.7	21	66	19	61	25	19	14	40	1.89
26798635--26798685	20	2.5	20	100	0	102	47	0	17	35	1.48
26806085--26806145	30	2.1	30	84	6	81	47	4	0	47	1.23
26806443--26806502	19	3.2	18	79	11	68	20	3	1	75	1.04
26806443--26806512	20	3.7	19	79	11	72	22	2	1	72	1.05
26807775--26807924	67	2.2	68	89	2	239	57	3	0	38	1.20
26811432--26811519	32	2.8	32	98	0	167	47	19	3	29	1.65
26811934--26812002	27	2.6	27	85	0	84	20	18	34	26	1.96
26816149--26816216	31	2.2	31	84	10	86	47	0	1	51	1.09
26817468--26817501	12	2.8	12	90	0	50	11	20	17	50	1.77
26817595--26817654	24	2.6	23	83	2	75	28	13	16	41	1.86
26822525--26822583	10	6.4	9	75	14	50	62	1	3	32	1.21
26832140--26832390	86	2.9	86	99	0	493	34	10	10	44	1.73
26839040--26839068	15	1.9	15	100	0	58	68	0	0	31	0.89
26844927--26844961	18	1.9	18	88	0	52	31	2	14	51	1.57
26846512--26846597	43	2.0	43	95	0	154	40	5	12	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26846846--26846878	15	2.2	15	94	0	57	24	12	18	45	1.83
26847866--26847904	20	2.0	20	84	0	51	20	10	7	61	1.52
26851649--26851688	11	3.5	11	86	3	53	0	20	2	77	0.88
26851644--26851696	27	1.9	28	84	3	72	1	18	3	75	1.05
26854016--26854085	34	2.1	34	86	5	97	41	2	38	17	1.64
26858882--26858943	31	2.0	31	100	0	124	48	6	16	29	1.70
26860961--26860988	13	2.2	13	100	0	56	17	0	0	82	0.68
26863653--26863685	2	16.5	2	93	0	57	54	0	45	0	0.99
26870053--26870191	70	2.0	68	86	5	190	47	13	14	24	1.80
26873858--26873970	45	2.5	45	87	5	158	24	19	15	39	1.91
26873950--26873976	14	1.9	14	100	0	54	22	14	25	37	1.93
26874791--26874861	24	3.2	24	67	19	71	18	7	23	50	1.71
26874790--26874874	43	2.0	43	88	0	125	17	9	24	48	1.77
26890929--26890962	16	2.1	17	94	5	61	26	11	0	61	1.30
26897123--26897194	4	18.0	4	91	0	90	25	6	23	44	1.78
26897432--26897876	219	2.0	220	97	0	847	27	20	18	33	1.96
26899320--26899349	14	2.1	14	100	0	60	30	23	13	33	1.93
26900959--26901023	34	1.9	34	87	0	94	32	7	26	33	1.85
26908743--26908796	21	2.6	21	77	11	65	48	12	18	20	1.81
26910070--26910142	30	2.5	29	80	8	85	27	34	12	26	1.92
26912024--26912073	19	2.7	20	72	12	52	64	0	0	36	0.94
26912412--26912465	21	2.6	21	77	11	65	46	11	18	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26915078--26915108	16	1.9	16	93	0	53	41	3	0	54	1.16
26917919--26917959	20	2.0	21	90	4	66	53	0	0	46	1.00
26923040--26923090	20	2.5	20	79	17	52	47	0	11	41	1.40
26924943--26924992	21	2.4	20	77	9	55	34	12	24	30	1.91
26930058--26930275	91	2.5	90	83	8	261	33	20	9	36	1.85
26930058--26930275	90	2.4	89	83	10	259	33	20	9	36	1.85
26930352--26930398	19	2.5	19	79	3	51	65	2	0	31	1.04
26930373--26930437	27	2.4	28	80	17	82	61	3	3	32	1.27
26930451--26930547	31	3.1	31	75	18	94	67	0	6	26	1.14
26930414--26930545	21	6.5	21	70	13	62	64	1	6	27	1.28
26930565--26930605	17	2.4	18	76	12	50	19	4	2	73	1.13
26930749--26930815	21	3.3	19	74	14	62	23	7	1	67	1.25
26931390--26931427	19	2.0	19	94	0	67	34	21	7	36	1.82
26932173--26932213	21	2.0	21	85	9	57	43	0	31	24	1.54
26936321--26936379	29	2.0	30	83	9	77	44	3	10	42	1.55
26943753--26943796	21	2.0	22	86	4	63	34	15	0	50	1.45
26956543--26956584	14	3.0	14	85	0	57	30	2	0	66	1.04
26956537--26956589	8	7.0	8	75	18	51	33	1	0	64	1.05
26956544--26956592	14	3.5	14	81	10	55	36	2	0	61	1.08
26962609--26962640	17	1.9	17	93	6	57	37	3	0	59	1.13
26964215--26964287	30	2.5	29	82	8	78	41	17	5	35	1.73
26966295--26966363	29	2.4	30	90	9	108	55	4	0	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26968881--26968933	7	7.7	7	87	4	81	32	24	26	16	1.97
26968888--26968926	20	2.0	20	94	0	69	33	23	25	17	1.96
26968878--26968933	27	2.1	27	96	0	103	35	23	25	16	1.94
26968999--26969044	15	3.1	15	84	6	58	19	8	28	43	1.80
26969019--26969053	15	2.3	15	90	0	52	25	5	28	40	1.78
26982603--26982762	41	3.9	42	74	8	107	36	15	23	25	1.93
26982684--26982789	43	2.5	43	89	3	151	35	14	29	20	1.92
26985311--26985335	13	1.9	13	100	0	50	40	4	24	32	1.73
26986144--26986277	69	1.9	69	86	7	189	47	5	2	44	1.40
26986343--26986371	8	3.6	8	100	0	58	34	0	0	65	0.93
26988466--26988503	16	2.4	17	86	13	62	31	10	10	47	1.72
26988572--26988607	18	2.0	18	94	0	63	55	13	13	16	1.69
26988779--26988838	21	3.0	21	72	13	54	26	5	3	65	1.29
26994485--26994523	16	2.4	16	82	0	51	43	7	17	30	1.77
26994916--26994940	7	3.6	7	100	0	50	76	0	0	24	0.80
26998083--26998234	53	2.9	51	81	10	189	30	5	15	48	1.68
26998115--26998200	20	4.7	20	64	21	53	33	4	10	51	1.57
27003491--27003548	27	2.1	28	84	9	75	48	0	3	48	1.18
27003497--27003558	31	2.0	30	82	14	74	53	0	1	45	1.10
27009831--27009860	6	5.0	6	95	0	51	13	0	3	83	0.77
27020546--27020639	28	3.5	27	69	24	74	45	3	3	47	1.34
27021273--27021311	18	2.2	18	100	0	78	46	10	5	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27023207--27023247	6	6.8	6	83	10	57	17	2	14	65	1.37
27023321--27023396	26	2.8	26	78	4	71	56	10	1	31	1.41
27026123--27026173	25	2.0	25	85	7	68	17	25	3	52	1.61
27027541--27027567	8	3.4	8	100	0	54	14	0	0	85	0.61
27027610--27027661	14	3.6	14	76	7	59	21	0	9	69	1.17
27030138--27030197	16	3.9	15	72	8	57	63	0	0	36	0.95
27034208--27034248	21	2.0	21	90	0	64	39	14	19	26	1.90
27034366--27034434	30	2.3	29	85	4	93	47	1	0	50	1.09
27034373--27034437	30	2.2	30	91	0	103	46	1	0	52	1.10
27035300--27035339	19	2.1	19	85	0	53	27	0	2	70	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125