genome.fa.s6.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  51  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702805--15702848	17	2.6	17	92	7	72	61	2	0	36	1.09
15703688--15703743	18	2.9	19	81	10	60	41	3	5	50	1.43
15703695--15703750	18	2.9	19	81	7	60	39	3	3	53	1.36
15705115--15705154	19	2.1	19	85	4	53	35	25	27	12	1.92
15708089--15708163	28	2.7	29	81	10	84	56	1	0	42	1.08
15708101--15708162	28	2.2	28	88	2	90	54	1	0	43	1.09
15708147--15708194	9	5.3	9	84	0	69	60	0	0	39	0.97
15708112--15708192	28	2.9	28	83	1	92	59	0	0	40	0.98
15720495--15720533	2	19.0	2	94	5	69	48	2	0	48	1.15
15720759--15720786	4	7.0	4	100	0	56	50	0	0	50	1.00
15723989--15724022	17	2.0	17	88	0	50	23	5	5	64	1.38
15724707--15724749	17	2.6	17	85	3	52	60	0	0	39	0.97
15725121--15725154	17	2.0	17	94	0	59	44	0	2	52	1.16
15725944--15725968	13	1.9	13	100	0	50	44	0	0	56	0.99
15730832--15730913	41	2.0	41	100	0	164	24	26	12	36	1.91
15731366--15731432	27	2.5	26	73	7	71	28	38	17	14	1.90
15732776--15732851	27	2.8	27	85	0	98	21	30	28	19	1.97
15733696--15733744	25	1.9	25	87	4	71	38	10	2	48	1.48
15734703--15734766	29	2.2	30	86	8	87	48	3	0	48	1.17
15734959--15735016	14	4.2	13	77	18	55	48	3	0	48	1.18
15735299--15735395	9	10.1	9	68	20	54	65	4	0	29	1.11
15735338--15735395	30	2.0	29	83	10	73	65	5	0	29	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15735295--15735385	19	4.7	20	73	20	86	65	3	0	30	1.08
15735297--15735397	20	5.2	19	73	15	73	65	3	0	30	1.11
15735338--15735397	10	6.0	10	75	13	61	65	5	0	30	1.14
15737441--15737543	25	4.1	25	80	9	93	25	20	22	32	1.98
15738294--15738437	42	3.4	41	71	8	128	26	20	18	35	1.95
15738412--15738560	43	3.5	42	75	10	151	25	20	19	34	1.96
15738294--15738560	84	3.2	83	80	1	246	25	20	18	35	1.95
15740321--15740479	80	2.0	80	100	0	318	33	11	26	28	1.91
15743970--15744028	19	2.9	20	85	10	84	59	5	0	35	1.20
15745968--15746226	110	2.4	109	88	1	378	47	9	16	26	1.78
15746503--15746571	31	2.3	29	85	12	86	21	10	23	44	1.82
15747384--15747428	23	2.0	23	82	8	56	35	8	2	53	1.45
15748052--15748087	15	2.4	15	86	13	56	36	2	0	61	1.11
15748072--15748115	22	1.9	24	90	9	74	38	0	2	59	1.10
15749218--15749271	21	2.6	21	82	5	65	31	27	12	27	1.93
15749937--15750100	25	6.6	25	81	6	158	37	28	15	17	1.91
15756301--15756351	21	2.3	23	83	12	63	47	27	9	15	1.77
15756961--15757077	25	4.6	25	82	5	137	32	25	20	21	1.97
15757438--15757497	31	1.9	31	96	0	111	31	26	8	33	1.86
15763845--15764017	20	8.6	20	65	9	75	18	20	23	38	1.94
15763838--15764015	60	3.0	60	83	0	239	19	20	21	38	1.93
15763940--15764030	40	2.3	41	81	7	107	16	20	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15763965--15764025	20	3.0	20	75	0	68	13	18	26	42	1.86
15764730--15764765	16	2.2	16	90	0	54	44	5	11	38	1.63
15775264--15775323	26	2.4	24	86	10	84	35	1	1	61	1.16
15782605--15783141	23	23.3	23	87	2	729	47	15	5	32	1.67
15783155--15783212	20	2.9	20	72	10	55	46	18	3	31	1.66
15783295--15783435	68	2.1	68	90	0	219	40	26	11	21	1.87
15783678--15783802	36	3.5	36	85	0	169	33	25	10	30	1.89
15786037--15786095	2	29.5	2	100	0	118	50	0	0	49	1.00
15786309--15786345	17	2.2	17	90	0	56	18	29	0	51	1.47
15786289--15786336	24	2.0	24	83	0	60	18	35	2	43	1.62
15792611--15792653	15	2.6	17	78	14	54	60	0	4	34	1.17
15792604--15792653	24	2.0	26	84	7	68	58	0	4	38	1.17
15800521--15800654	52	2.6	51	92	2	232	26	14	25	33	1.95
15803534--15803577	13	3.1	16	81	18	53	0	20	0	79	0.73
15803544--15803591	25	2.0	24	88	8	71	2	22	0	75	0.91
15803534--15803589	18	2.9	18	73	26	53	1	21	0	76	0.87
15804634--15804683	3	16.7	3	83	8	66	2	34	2	62	1.18
15806544--15806587	15	2.9	15	96	0	79	63	6	18	11	1.48
15815988--15816043	20	2.5	24	83	16	77	46	5	0	48	1.25
15829934--15829960	3	9.0	3	100	0	54	66	0	33	0	0.92
15831485--15831587	46	2.2	46	84	3	127	20	13	15	50	1.77
15839892--15839934	20	2.2	20	84	12	54	20	9	13	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15842066--15842108	16	2.8	16	82	13	54	67	0	13	18	1.23
15848654--15848716	24	2.6	24	92	0	99	49	11	14	25	1.76
15858735--15858789	28	2.0	29	92	7	96	29	20	29	21	1.98
15859102--15859520	208	2.0	208	97	0	784	31	5	22	40	1.77
15859715--15859766	21	2.5	21	75	6	52	26	13	26	32	1.94
15861418--15861455	14	2.7	14	84	11	51	10	18	2	68	1.30
15865018--15865069	24	2.1	25	82	10	63	59	1	34	3	1.27
15865489--15865529	17	2.4	18	80	19	52	19	19	12	48	1.80
15866111--15866144	13	2.7	12	90	9	50	79	2	8	8	1.03
15869573--15869610	18	2.0	19	85	10	51	42	15	0	42	1.47
15872244--15872337	46	2.0	46	83	4	118	20	13	13	52	1.75
15872972--15873210	119	2.0	119	100	0	478	37	10	26	25	1.88
15883918--15883969	15	3.4	15	84	10	70	75	0	23	1	0.91
15896394--15896424	15	2.1	15	100	0	62	58	6	29	6	1.48
15896752--15896791	21	1.9	21	85	10	55	57	12	27	2	1.48
15898734--15899095	195	1.9	195	82	2	444	28	18	27	25	1.98
15900827--15900864	15	2.4	16	86	8	60	73	0	21	5	1.02
15902626--15902715	40	2.2	40	80	0	108	31	16	31	21	1.95
15907890--15907920	14	2.1	15	94	5	55	70	0	22	6	1.09
15909329--15909364	14	2.6	14	90	0	54	22	22	19	36	1.95
15911945--15912079	55	2.5	55	85	1	173	19	14	37	29	1.91
15912093--15912224	52	2.5	53	85	1	176	21	16	34	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15929622--15929657	18	2.0	18	94	0	63	25	5	8	61	1.46
15933723--15933761	17	2.3	17	86	8	53	64	7	5	23	1.40
15951759--15951941	87	2.1	87	82	8	212	21	9	22	46	1.80
15951773--15951935	58	2.8	58	80	9	179	22	9	20	46	1.80
15951771--15951947	29	6.1	29	77	6	162	22	10	20	46	1.80
15951982--15952047	26	2.5	26	85	4	80	18	22	21	37	1.94
15954091--15954142	14	3.6	14	73	19	52	65	13	11	9	1.47
15954078--15954142	30	2.2	30	94	0	112	61	13	12	12	1.57
15954078--15954128	16	3.3	16	71	20	54	60	13	11	13	1.59
15977109--15977149	19	2.1	20	86	4	57	68	9	7	14	1.39
15977099--15977149	23	2.4	19	84	15	57	66	11	7	13	1.43
15983167--15983305	46	3.0	45	69	12	120	41	18	10	29	1.83
15983120--15983305	92	2.0	92	87	2	266	41	17	11	29	1.84
15986374--15986445	30	2.4	30	85	0	99	16	12	29	41	1.85
15993453--15993504	23	2.3	23	82	0	68	32	17	11	38	1.85
16008490--16008530	19	2.2	19	90	0	64	26	12	12	48	1.75
16011357--16011392	15	2.4	15	90	0	54	13	13	5	66	1.41
16016896--16017054	79	2.0	79	100	0	318	35	20	18	25	1.95
16021514--16021552	21	1.9	21	89	5	62	15	12	7	64	1.49
16023868--16023910	18	2.3	19	80	4	52	13	18	9	58	1.62
16024490--16024520	12	2.7	12	95	5	55	87	0	12	0	0.55
16031514--16031845	43	7.8	43	84	3	404	32	21	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16031514--16031845	124	2.6	129	84	7	451	32	21	9	36	1.86
16036125--16036180	17	3.3	17	77	5	51	35	26	12	25	1.91
16037711--16037739	13	2.1	14	93	6	51	37	34	6	20	1.80
16038229--16038264	17	2.1	17	94	0	63	55	2	5	36	1.38
16041492--16041561	11	6.0	11	76	15	52	38	2	0	58	1.13
16041493--16041568	6	12.8	6	74	13	68	39	2	1	56	1.21
16041493--16041567	17	4.6	17	85	9	102	38	2	1	57	1.21
16041526--16041553	14	2.0	14	100	0	56	35	7	0	57	1.26
16041509--16041567	31	1.9	31	92	0	100	38	3	1	55	1.26
16042186--16042230	21	2.1	21	83	0	54	37	13	0	48	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125