genome.fa.s6.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  45  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13939548--13939594	18	2.6	18	89	0	67	25	23	21	29	1.99
13939566--13939600	18	2.0	18	88	5	54	28	22	22	25	1.99
13941342--13941380	17	2.2	18	90	4	62	33	0	15	51	1.44
13946282--13946346	25	2.6	25	77	0	67	24	23	21	30	1.99
13953597--13953664	25	2.7	25	81	0	82	23	17	27	30	1.97
13955396--13955433	20	1.9	20	84	10	51	31	15	0	52	1.43
13973017--13973081	19	3.5	19	68	2	60	33	24	20	21	1.97
13979376--13979417	20	2.0	21	86	4	59	42	19	4	33	1.72
13983339--13983392	21	2.6	21	85	5	74	31	25	12	29	1.93
13984857--13984899	21	2.2	20	87	8	61	32	9	4	53	1.53
13986089--13986127	14	2.5	15	84	16	53	61	5	0	33	1.18
13986556--13986580	13	1.9	13	100	0	50	28	24	8	40	1.83
13987253--13987305	19	2.7	19	82	5	61	33	1	5	58	1.32
13989157--13989635	158	3.0	158	85	1	638	23	22	24	29	1.99
14004287--14004320	16	2.1	17	88	5	52	82	8	0	8	0.85
14004557--14004604	15	3.2	15	76	8	53	72	12	12	2	1.20
14005587--14005621	18	1.9	18	88	0	52	28	2	0	68	1.04
14005668--14005712	22	2.1	21	87	4	63	28	11	0	60	1.31
14009595--14009653	21	2.8	21	81	0	64	44	30	13	11	1.80
14018805--14018867	21	3.0	20	86	13	74	60	0	1	38	1.07
14018807--14018867	22	2.8	21	82	14	70	59	0	1	39	1.08
14024425--14024494	35	2.1	33	86	5	95	22	12	8	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025420--14025468	15	3.5	14	78	8	55	44	2	2	51	1.24
14030566--14030607	21	2.0	22	85	4	59	11	19	4	64	1.44
14036175--14036215	19	2.2	19	100	0	82	39	19	4	36	1.73
14036614--14036683	24	2.9	24	91	8	108	27	24	22	25	2.00
14036665--14036767	27	3.8	27	83	2	127	33	24	18	23	1.96
14040825--14041042	99	2.2	99	88	2	314	34	8	19	37	1.83
14042164--14042353	42	4.5	42	83	7	215	37	11	25	24	1.89
14047126--14047177	23	2.3	22	80	6	59	42	5	15	36	1.71
14047331--14047383	26	2.0	26	100	0	106	30	28	15	26	1.96
14048669--14048709	15	2.5	18	81	18	54	0	19	2	78	0.87
14063712--14063755	22	2.0	23	90	4	72	43	6	15	34	1.74
14064869--14065012	72	2.0	72	98	0	279	50	10	11	28	1.71
14066597--14066649	24	2.2	24	79	0	61	52	7	3	35	1.48
14081725--14081785	9	7.1	8	75	17	52	57	1	0	40	1.08
14081757--14081790	17	2.0	17	88	0	50	47	2	0	50	1.16
14090626--14090665	21	1.9	21	84	0	53	35	17	20	27	1.95
14095020--14095067	21	2.3	21	89	7	71	29	8	27	35	1.86
14097869--14097907	20	2.0	20	90	10	62	51	15	0	33	1.44
14097866--14097913	20	2.7	16	77	22	51	50	14	0	35	1.44
14101260--14101286	7	3.9	7	100	0	54	11	44	0	44	1.39
14108357--14108391	17	2.1	17	89	5	54	22	48	5	22	1.72
14110891--14110963	36	2.0	36	100	0	146	30	19	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14110953--14111040	43	2.0	43	82	4	106	30	17	20	31	1.95
14120180--14120227	21	2.3	19	80	19	60	29	12	27	31	1.93
14129516--14129569	20	2.6	20	76	18	65	55	0	0	44	0.99
14129527--14129569	23	1.9	23	90	4	70	53	0	0	46	1.00
14130674--14130740	33	2.1	31	83	10	82	17	7	10	64	1.47
14130894--14130944	18	2.9	17	77	16	50	23	7	3	64	1.37
14142810--14142853	23	2.0	23	81	4	54	38	6	15	38	1.75
14145149--14145297	20	7.4	20	87	3	178	14	17	30	36	1.90
14145149--14145297	60	2.5	60	86	6	196	14	17	30	36	1.90
14147457--14147496	21	1.9	21	89	0	62	40	0	37	22	1.54
14147456--14147502	21	2.2	21	80	0	58	42	0	34	23	1.54
14148843--14148921	2	39.5	2	100	0	158	0	50	0	49	1.00
14156213--14156303	45	2.0	45	100	0	182	26	10	31	30	1.91
14157223--14157260	18	2.1	18	90	0	58	36	13	7	42	1.73
14159546--14159614	34	2.0	34	83	10	88	43	13	1	42	1.52
14160979--14161020	22	2.0	21	85	4	57	33	0	0	66	0.92
14161014--14161056	21	2.0	21	82	8	52	39	0	9	51	1.34
14163691--14163739	11	4.5	11	78	12	57	40	2	0	57	1.10
14163702--14163760	19	3.2	19	72	13	68	38	3	0	57	1.15
14164341--14164389	25	2.0	25	83	0	62	46	4	0	48	1.20
14164347--14164400	25	2.2	25	82	0	63	46	3	0	50	1.19
14164906--14164970	28	2.3	29	84	7	89	29	1	7	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14165138--14165208	31	2.4	30	85	4	99	46	7	5	40	1.54
14165499--14165556	29	2.0	29	89	0	89	39	6	8	44	1.62
14178204--14178233	14	2.1	14	93	0	51	30	0	10	60	1.30
14179187--14179245	29	2.0	31	86	6	86	22	40	0	37	1.54
14179824--14180874	263	4.0	263	88	2	1524	34	10	28	26	1.90
14184035--14184113	36	2.2	37	86	4	108	18	27	20	32	1.96
14193356--14193581	9	23.8	9	67	17	77	58	3	3	34	1.31
14194030--14194093	28	2.3	27	82	15	69	34	1	3	60	1.22
14194118--14194199	37	2.2	36	85	6	103	35	1	1	62	1.11
14194118--14194216	18	5.3	19	71	13	64	34	1	1	63	1.08
14194885--14194972	39	2.3	39	90	2	133	21	15	19	43	1.88
14194884--14194996	39	2.9	39	82	1	111	23	16	19	40	1.91
14201685--14201769	39	2.2	39	82	0	107	23	14	17	44	1.85
14201698--14201776	39	2.1	39	87	2	115	22	13	17	45	1.84
14203380--14203416	18	2.0	19	85	15	51	45	2	2	48	1.30
14207402--14207430	15	1.9	15	100	0	58	31	6	13	48	1.69
14210602--14210888	117	2.5	117	85	1	378	23	12	19	44	1.85
14210583--14210889	39	7.9	39	83	0	319	23	13	19	43	1.86
14217642--14217729	39	2.3	39	86	4	115	22	12	21	43	1.86
14217671--14217735	20	3.3	20	68	20	64	23	13	20	43	1.87
14217664--14217908	39	6.3	39	81	0	265	23	13	20	43	1.86
14217664--14217908	117	2.1	117	82	0	301	23	13	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14221095--14221135	18	2.3	18	87	8	57	73	0	19	7	1.07
14224691--14224765	31	2.5	30	83	12	100	46	21	10	21	1.81
14225782--14225853	31	2.4	30	82	13	85	26	15	15	43	1.86
14230106--14230241	43	3.2	43	84	2	166	25	25	19	30	1.98
14235840--14235878	21	1.9	20	89	5	60	66	5	2	25	1.25
14236523--14236679	41	3.8	41	86	3	219	18	25	17	38	1.92
14236523--14236716	82	2.4	82	84	6	234	19	25	17	38	1.92
14236526--14236799	41	6.8	39	79	7	169	20	23	17	38	1.93
14244583--14244644	25	2.5	25	81	0	70	40	14	8	37	1.76
14244604--14244660	5	11.4	5	73	0	51	42	14	5	38	1.68
14244609--14244655	20	2.3	20	88	0	67	42	12	6	38	1.69
14244621--14244658	20	1.9	20	100	0	76	36	15	7	39	1.77
14245320--14245388	36	1.9	36	87	0	102	30	26	23	20	1.98
14245312--14245397	36	2.4	35	80	7	100	26	25	26	20	1.99
14257138--14257182	21	2.1	21	87	0	63	15	15	2	66	1.35
14269942--14270290	42	8.1	44	82	5	410	30	28	16	24	1.96
14269950--14270294	86	4.0	85	82	5	403	30	29	15	24	1.96
14278495--14278537	17	2.6	17	88	3	61	58	2	2	37	1.24
14280017--14280051	15	2.3	15	90	0	52	71	0	0	28	0.86
14280008--14280060	16	3.4	15	76	5	52	71	1	0	26	0.96
14280543--14280618	31	2.4	31	80	8	82	26	11	6	55	1.60
14280795--14280896	30	3.4	30	68	18	86	48	12	15	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14280784--14280925	60	2.4	59	84	10	175	49	12	14	23	1.78
14285188--14285252	23	2.8	23	86	9	96	43	20	21	15	1.88
14285149--14285223	39	1.9	39	83	5	98	44	20	22	13	1.86
14285189--14285300	23	4.8	23	69	23	72	44	18	21	15	1.86
14290656--14290680	13	1.9	13	100	0	50	48	16	4	32	1.64
14290742--14290928	9	20.9	9	73	12	129	54	17	3	24	1.59
14290742--14290930	37	5.3	37	71	15	148	54	17	3	24	1.59
14290691--14290926	9	26.0	9	71	10	99	54	16	3	25	1.58
14290789--14290912	44	2.8	44	84	6	155	54	17	4	23	1.62
14292682--14292752	31	2.3	31	83	11	85	42	19	15	22	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125