genome.fa.s6.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  5  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389433--1389476	21	2.1	21	86	0	61	68	2	0	29	1.02
1391151--1391225	26	2.8	26	79	15	80	46	0	2	50	1.15
1391161--1391225	29	2.4	26	85	12	78	46	0	3	50	1.17
1391175--1391238	24	2.4	25	77	15	67	42	1	3	53	1.26
1391567--1391667	18	5.3	19	70	22	61	55	0	1	42	1.11
1391530--1391601	30	2.5	30	78	13	87	59	2	1	36	1.20
1391601--1391647	12	4.3	12	72	25	50	53	0	4	42	1.20
1391575--1391638	18	3.5	18	76	23	71	54	0	3	42	1.16
1391530--1391690	10	16.4	10	65	20	72	54	1	3	40	1.24
1393005--1393046	14	3.1	14	75	3	50	38	30	4	26	1.77
1396978--1397037	31	2.0	31	84	12	81	48	11	8	31	1.69
1399127--1399157	14	2.3	13	94	5	53	48	0	3	48	1.17
1400936--1400979	18	2.4	18	85	7	54	50	2	2	45	1.27
1405694--1405732	8	4.9	8	84	9	53	61	0	2	35	1.10
1410432--1410459	2	14.0	2	100	0	56	50	0	0	50	1.00
1424453--1424508	28	2.0	28	100	0	112	35	14	17	32	1.90
1426882--1426966	38	2.2	38	91	0	134	41	18	15	24	1.89
1437638--1437686	23	2.2	21	79	10	53	32	0	0	67	0.91
1441110--1441154	18	2.4	19	85	3	56	55	2	0	42	1.12
1444025--1444061	19	1.9	19	88	0	56	45	0	5	48	1.25
1452142--1452179	19	2.1	19	85	9	53	34	0	2	63	1.09
1453053--1453094	3	14.0	3	100	0	84	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1456003--1456035	2	16.5	2	100	0	66	0	48	0	51	1.00
1458804--1458894	18	4.8	18	71	24	62	62	1	2	34	1.14
1458822--1458895	23	3.4	21	75	21	73	63	0	2	33	1.09
1458797--1458895	42	2.4	40	88	8	144	62	1	3	33	1.17
1464632--1465260	217	2.9	216	92	1	1019	39	16	12	32	1.86
1466423--1466459	2	19.0	2	94	5	67	51	0	0	48	1.00
1466137--1466725	298	2.0	298	100	0	1178	45	6	20	27	1.76
1468739--1468807	17	4.2	17	75	17	65	30	2	5	60	1.34
1469382--1469409	14	2.0	14	100	0	56	50	0	0	50	1.00
1469368--1469410	23	1.9	22	85	4	59	41	0	0	58	0.98
1470669--1470693	13	1.9	13	100	0	50	28	8	8	56	1.57
1471151--1471214	9	6.8	9	76	16	51	39	1	0	59	1.07
1471143--1471205	20	3.2	20	84	8	85	36	1	0	61	1.05
1471138--1471205	30	2.3	29	80	16	86	36	1	0	61	1.05
1471138--1471222	20	4.0	22	76	17	81	38	1	0	60	1.05
1471138--1471218	21	3.8	20	79	12	90	38	1	0	60	1.05
1471134--1471222	23	4.0	22	75	15	85	38	1	0	60	1.04
1495334--1495398	23	2.8	23	78	0	76	32	13	12	41	1.82
1496939--1496979	20	2.0	20	90	9	66	39	0	0	60	0.96
1498797--1498828	15	2.1	15	94	5	55	56	0	9	34	1.32
1511117--1511186	31	2.3	31	85	5	88	27	7	17	48	1.72
1511536--1511585	22	2.3	22	78	0	55	60	8	10	22	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511709--1511739	14	2.2	14	94	0	53	19	16	6	58	1.59
1512284--1512316	2	16.5	2	100	0	66	48	0	0	51	1.00
1512671--1512720	15	3.5	15	74	17	52	54	0	2	44	1.11
1512653--1512716	30	2.2	31	83	8	80	51	3	1	43	1.26
1534315--1534345	2	15.5	2	100	0	62	48	0	0	51	1.00
1535096--1535158	25	2.5	25	80	10	83	49	0	3	47	1.17
1536264--1536307	17	2.5	17	81	3	52	34	0	2	63	1.07
1537043--1537102	31	1.9	31	83	6	77	30	6	10	53	1.60
1537633--1537865	113	2.1	114	95	0	423	32	13	27	26	1.93
1537939--1537969	16	1.9	16	93	0	53	16	22	12	48	1.80
1538260--1538284	13	1.9	13	100	0	50	44	8	24	24	1.80
1538568--1538602	12	3.0	12	91	4	54	57	14	8	20	1.63
1539470--1539526	11	5.1	11	77	12	62	52	21	10	15	1.72
1541663--1541718	19	3.0	19	89	7	80	46	16	14	23	1.83
1542720--1542771	25	2.1	24	82	10	61	57	3	3	34	1.35
1544710--1544813	23	4.5	23	80	0	118	48	22	15	14	1.81
1548760--1548811	20	2.5	21	78	12	63	34	1	1	61	1.18
1549297--1549350	22	2.4	22	82	11	65	64	0	3	31	1.11
1551082--1551119	17	2.1	19	85	9	53	47	2	0	50	1.15
1551188--1551243	29	2.0	28	82	10	69	58	0	5	35	1.21
1551978--1552011	3	11.3	3	93	0	59	64	0	2	32	1.08
1566343--1566383	20	2.0	21	85	4	57	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568463--1568530	9	6.8	10	71	17	52	60	1	1	36	1.15
1568463--1568519	10	5.5	10	75	21	55	61	1	1	35	1.17
1568493--1568573	27	3.0	27	73	20	80	62	2	2	32	1.21
1568516--1568580	17	3.6	17	76	12	58	67	3	1	27	1.14
1579508--1580077	143	4.0	142	98	1	1099	31	7	12	47	1.70
1579508--1580077	284	2.0	284	99	0	1131	31	7	12	47	1.70
1582073--1582135	24	2.6	25	73	17	60	68	0	0	31	0.90
1584829--1584878	21	2.4	21	83	6	57	42	2	0	56	1.11
1591493--1591555	31	2.0	32	87	6	94	28	7	1	61	1.33
1593365--1593408	22	1.9	23	86	9	63	54	9	4	31	1.52
1594948--1594994	25	1.9	24	83	12	60	12	10	6	70	1.33
1601706--1601797	38	2.4	38	80	15	100	30	2	3	64	1.21
1601703--1601776	35	2.0	37	87	10	107	31	2	1	64	1.15
1601705--1601818	10	11.7	9	69	19	61	30	2	2	64	1.21
1617307--1617336	11	2.7	11	94	0	51	53	0	30	16	1.44
1619075--1619121	3	15.7	3	100	0	94	65	0	0	34	0.93
1625557--1625943	189	2.0	191	87	4	555	31	14	22	31	1.94
1629111--1629155	13	3.6	12	85	8	54	44	17	11	26	1.82
1632213--1632240	7	4.0	7	100	0	56	42	14	42	0	1.45
1642900--1643164	115	2.3	116	85	3	354	33	13	21	30	1.92
1643219--1643283	25	2.6	25	87	0	94	12	15	26	46	1.81
1649513--1649553	10	4.2	10	87	6	66	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649500--1649553	20	2.7	20	88	5	74	72	0	0	27	0.85
1652329--1652394	22	2.8	24	72	11	64	42	0	1	56	1.08
1652363--1652396	15	2.2	16	89	5	52	32	0	0	67	0.91
1652330--1652420	46	2.0	47	80	10	107	42	0	1	56	1.06
1652385--1652460	30	2.6	29	83	8	82	40	1	1	56	1.16
1654117--1654164	24	2.0	24	84	12	62	47	4	14	33	1.63
1654334--1654370	3	12.3	3	100	0	74	67	0	0	32	0.91
1657993--1658057	13	5.1	13	86	3	78	40	20	4	35	1.73
1657993--1658057	25	2.5	26	82	5	78	40	20	4	35	1.73
1661797--1661849	15	3.5	15	75	17	56	33	7	0	58	1.26
1662561--1662626	29	2.2	28	78	7	69	33	7	6	53	1.54
1663003--1663076	20	3.8	20	73	8	73	52	1	0	45	1.09
1673430--1673612	56	3.2	56	84	6	201	30	14	9	45	1.77
1673476--1673640	56	2.9	56	84	3	188	30	14	8	46	1.75
1673863--1674218	57	6.3	56	82	8	416	44	10	15	29	1.80
1673855--1674218	114	3.2	114	84	5	495	44	10	15	29	1.80
1675277--1675343	31	2.2	31	88	0	98	44	11	10	32	1.75
1680682--1680744	29	2.2	29	82	0	72	41	15	28	14	1.87
1696994--1697028	2	17.0	2	94	5	61	48	0	2	48	1.16
1705924--1705969	23	1.9	23	82	8	56	26	8	21	43	1.81
1711677--1712097	48	8.8	48	87	2	481	30	36	21	11	1.88
1712197--1712291	39	2.4	39	82	3	111	41	33	18	6	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1712279--1712901	48	12.6	48	66	12	224	30	33	21	14	1.93
1724119--1724150	15	2.1	16	88	11	50	59	3	0	37	1.13
1727154--1727302	72	2.1	72	91	2	237	38	16	20	25	1.92
1729406--1729461	29	1.9	29	82	13	71	48	0	8	42	1.34
1733639--1733859	72	3.1	72	92	1	354	37	15	22	24	1.93
1744015--1744086	31	2.3	31	83	4	83	31	13	15	38	1.87
1744491--1744522	16	2.0	16	93	0	55	40	12	15	31	1.85
1747328--1747374	24	2.0	24	91	0	76	53	8	12	25	1.67
1755860--1755954	46	2.1	46	93	0	163	51	10	13	24	1.72
1759771--1759850	39	2.1	39	85	0	106	33	21	13	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125