genome.fa.s6.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  117  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36523838--36524127	143	2.0	143	91	2	467	34	13	13	39	1.83
36530270--36530393	23	5.3	23	82	5	133	44	20	22	12	1.85
36530220--36530369	69	2.1	67	85	11	196	45	20	21	13	1.84
36532196--36532236	21	1.9	22	90	5	66	39	4	7	48	1.52
36533785--36534052	143	1.9	143	91	1	439	34	13	11	41	1.79
36535054--36535087	2	17.5	2	93	6	61	50	0	0	50	1.00
36535386--36535411	7	3.7	7	100	0	52	76	0	0	23	0.78
36540010--36540048	18	2.2	17	86	4	51	38	5	2	53	1.37
36541777--36541962	30	6.2	30	86	3	232	32	1	22	43	1.63
36542824--36542848	11	2.3	11	100	0	50	72	0	0	28	0.86
36543282--36543416	50	2.7	50	90	0	189	23	17	17	41	1.90
36543404--36543541	40	3.5	40	86	3	145	23	13	29	32	1.93
36543405--36543856	119	3.8	117	77	8	394	25	17	24	32	1.97
36543405--36543852	80	5.6	80	85	3	530	25	17	24	32	1.97
36543910--36544137	50	4.6	50	85	0	303	18	24	20	36	1.95
36543911--36544137	100	2.3	100	94	0	391	18	24	20	36	1.95
36545854--36545897	20	2.2	20	84	4	54	50	22	6	20	1.72
36555697--36555734	15	2.6	15	83	4	51	68	7	0	23	1.16
36555803--36555919	30	4.0	29	82	7	130	35	2	17	44	1.62
36558095--36558133	17	2.3	17	90	0	60	46	0	0	53	1.00
36558797--36558841	21	2.2	20	84	7	56	51	0	2	46	1.13
36559978--36560166	29	6.4	29	78	8	177	34	23	2	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36559978--36560166	58	3.2	58	80	10	206	34	23	2	39	1.69
36560125--36560257	57	2.3	58	81	3	153	29	30	4	36	1.77
36568362--36568412	2	25.5	2	100	0	102	50	0	0	49	1.00
36572984--36573023	18	2.2	18	95	0	71	45	22	0	32	1.53
36576565--36576830	142	1.9	143	88	2	410	34	13	11	40	1.81
36577301--36577329	11	2.6	11	100	0	58	37	0	6	55	1.27
36577312--36577400	17	5.4	17	86	2	101	47	2	1	49	1.21
36577301--36577399	11	9.0	11	73	15	53	45	2	2	50	1.24
36577292--36577406	6	20.3	6	67	18	68	47	1	2	47	1.26
36577312--36577405	33	2.8	32	82	4	98	47	2	1	48	1.20
36579217--36579707	116	4.2	116	90	3	718	34	32	1	30	1.67
36579217--36579707	59	8.4	59	87	2	686	34	32	1	30	1.67
36584362--36584400	18	2.2	18	86	9	53	71	2	10	15	1.23
36586152--36586213	30	2.1	30	84	0	79	48	1	32	17	1.57
36588932--36589211	153	1.8	151	86	3	400	35	13	12	39	1.82
36591380--36591652	142	1.9	143	89	2	424	35	12	12	39	1.81
36599585--36599643	31	1.9	31	85	0	82	49	13	5	32	1.64
36605694--36605745	27	1.9	27	84	7	70	53	0	0	46	1.00
36606129--36606200	27	2.6	27	86	6	101	51	1	4	43	1.29
36607164--36607218	27	2.1	27	93	3	94	56	0	9	34	1.31
36609238--36609578	165	2.1	165	91	2	553	31	16	18	33	1.93
36642731--36642804	15	4.9	15	76	11	62	37	4	0	58	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36642731--36642804	29	2.5	29	84	8	87	37	4	0	58	1.17
36648058--36648101	2	22.0	2	90	0	70	0	45	0	54	0.99
36660299--36660662	181	2.0	183	93	1	624	25	14	16	43	1.85
36668597--36668626	2	15.0	2	100	0	60	50	0	0	50	1.00
36680114--36680138	3	8.3	3	100	0	50	36	0	0	64	0.94
36680797--36680821	13	1.9	13	100	0	50	88	0	12	0	0.53
36685724--36685778	26	2.0	26	86	10	74	72	0	1	25	0.94
36685733--36685779	14	3.4	14	82	14	62	74	0	2	23	0.93
36685908--36685967	23	2.5	24	79	12	63	66	5	0	28	1.12
36689518--36689552	15	2.3	16	90	9	56	40	0	0	60	0.97
36693228--36693273	24	2.0	24	86	4	67	41	4	0	54	1.20
36695277--36695343	29	2.4	28	92	2	107	47	1	8	41	1.44
36695289--36695351	28	2.2	29	82	2	83	49	3	7	39	1.48
36696444--36696495	18	3.0	16	73	15	50	67	5	7	19	1.36
36697422--36697466	23	2.0	23	86	4	65	17	2	15	64	1.39
36699640--36699675	18	2.0	18	88	0	54	44	0	0	55	0.99
36701656--36701708	27	2.0	25	89	7	79	58	5	11	24	1.54
36707251--36707282	16	2.0	16	100	0	64	18	31	25	25	1.98
36710764--36710796	2	16.5	2	100	0	66	48	0	51	0	1.00
36712820--36712881	25	2.3	26	84	15	74	27	8	12	51	1.68
36718190--36718246	9	6.0	9	72	11	51	52	3	5	38	1.41
36722346--36722453	36	3.0	36	97	0	207	28	12	19	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36724830--36724866	18	2.1	18	100	0	74	21	16	5	56	1.59
36738335--36738377	21	2.0	21	86	8	61	34	2	20	41	1.65
36744963--36745154	101	1.9	102	83	2	251	34	7	22	34	1.83
36759401--36759446	3	15.3	3	86	0	65	69	0	30	0	0.89
36759337--36759566	117	2.0	117	81	6	270	56	3	31	8	1.47
36759423--36759626	90	2.3	90	82	4	250	54	3	31	9	1.52
36759514--36759762	108	2.3	107	84	3	329	55	2	34	7	1.43
36759721--36759755	18	1.9	18	94	0	61	65	0	31	2	1.07
36759864--36759912	14	3.5	15	81	13	52	55	4	38	2	1.31
36759875--36759914	12	3.0	13	82	17	55	60	5	35	0	1.19
36759655--36759899	81	3.0	82	82	8	311	54	5	32	7	1.51
36766612--36766670	29	2.0	29	83	6	75	32	0	5	62	1.17
36771456--36771491	18	2.0	18	89	10	56	47	2	0	50	1.15
36772904--36772947	23	1.9	23	86	9	63	63	0	0	36	0.95
36772915--36772964	15	3.4	15	72	10	50	66	0	0	34	0.92
36773288--36773403	61	1.9	61	82	6	148	52	9	12	25	1.69
36784474--36784509	16	2.2	16	90	0	54	2	5	2	88	0.67
36805328--36805352	7	3.6	7	100	0	50	88	12	0	0	0.53
36810758--36810806	21	2.3	20	76	10	53	20	10	6	63	1.47
36810764--36810804	21	1.9	21	85	5	55	21	9	2	65	1.34
36811892--36811972	41	2.0	41	87	4	119	48	22	13	16	1.80
36838282--36838310	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36840304--36840378	2	37.5	2	100	0	150	50	0	0	49	1.00
36842859--36842897	2	19.5	2	100	0	78	48	0	0	51	1.00
36864155--36864212	26	2.1	28	90	6	93	43	8	8	39	1.66
36864641--36864667	6	4.5	6	100	0	54	70	0	0	29	0.88
36864642--36864685	11	3.9	11	87	3	52	68	0	2	29	1.02
36872827--36872867	22	1.9	22	85	14	59	51	0	0	48	1.00
36882562--36882780	62	3.6	62	76	7	180	33	16	10	38	1.84
36886542--36886589	12	3.7	12	75	20	51	52	0	8	39	1.32
36886693--36887249	84	6.6	84	89	2	825	43	5	4	46	1.46
36887342--36887402	22	2.8	22	87	0	86	39	31	8	21	1.82
36888374--36888418	20	2.3	19	77	11	54	24	2	2	71	1.09
36888363--36888418	29	1.9	29	86	13	80	25	3	3	67	1.22
36889082--36889128	24	2.0	24	83	8	60	31	27	27	12	1.93
36889091--36889136	24	1.9	24	82	8	58	32	32	23	10	1.90
36889591--36889708	30	4.0	30	80	8	134	26	9	4	60	1.46
36890340--36891006	60	11.4	58	70	13	329	36	14	18	30	1.91
36890440--36890540	52	2.0	51	84	2	130	33	15	20	29	1.94
36890674--36890909	57	4.1	57	76	8	167	35	13	16	34	1.88
36890349--36890910	117	4.8	114	77	12	322	37	14	16	31	1.89
36890903--36891018	54	2.2	53	82	4	135	31	15	18	35	1.92
36895186--36895264	39	2.0	39	100	0	158	32	41	7	17	1.78
36899290--36899331	18	2.3	19	80	12	52	57	7	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36901414--36901521	37	2.9	37	77	1	126	29	7	15	47	1.73
36923393--36923457	6	11.7	6	71	21	52	44	1	1	52	1.19
36923393--36923454	17	3.6	17	84	6	81	41	1	1	54	1.19
36923407--36923457	11	4.7	11	76	11	52	47	0	1	50	1.12
36923393--36923457	16	3.9	17	88	8	80	44	1	1	52	1.19
36924589--36924638	15	3.4	14	81	13	55	74	2	20	4	1.08
36924671--36924745	21	3.6	21	92	0	123	18	21	52	8	1.71
36925416--36925657	30	8.1	28	75	10	133	33	20	3	42	1.69
36925455--36925704	60	4.2	60	80	9	280	34	18	2	44	1.63
36925445--36925716	121	2.3	119	84	5	345	33	20	2	43	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125