genome.fa.s6.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  42  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12973186--12973231	21	2.2	21	88	7	67	23	47	0	28	1.52
12978035--12978087	24	2.2	25	75	18	60	45	0	7	47	1.31
12978035--12978619	148	4.0	145	83	7	705	44	3	8	43	1.51
12978033--12978619	296	2.0	297	86	3	835	44	3	8	43	1.51
12979199--12979248	16	3.2	15	86	8	64	20	4	4	72	1.18
12983806--12984015	110	1.9	110	83	3	271	40	14	11	32	1.83
12984290--12984415	31	4.2	30	74	11	89	61	3	9	25	1.44
12984306--12984418	59	1.9	59	82	7	140	61	4	9	23	1.45
12986076--12986487	42	10.0	42	81	4	446	25	16	27	30	1.96
12986066--12986488	81	5.2	81	82	2	524	26	15	27	30	1.96
12986569--12986910	47	7.1	47	65	15	126	26	19	19	34	1.96
12986541--12986919	95	3.9	96	76	11	362	27	19	18	34	1.95
12986571--12986973	195	2.1	196	87	3	575	26	18	19	35	1.94
12987543--12987580	20	1.9	20	94	0	67	55	0	21	23	1.44
12988800--12988860	17	3.4	18	80	17	74	1	22	0	75	0.89
12988798--12988876	36	2.2	35	78	14	81	3	21	1	73	1.06
13020694--13020744	22	2.3	22	93	0	84	45	0	1	52	1.12
13020702--13020746	10	4.3	10	78	10	54	44	0	2	53	1.13
13020734--13020799	33	2.0	34	94	5	118	54	12	0	33	1.37
13020795--13020860	32	2.1	32	97	0	123	34	6	9	50	1.59
13026252--13026284	15	2.2	15	94	0	57	24	0	27	48	1.51
13026380--13026750	43	8.6	42	88	4	481	23	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026361--13026750	86	4.5	86	88	1	532	24	19	27	28	1.99
13039332--13039367	17	2.1	17	100	0	72	25	11	11	52	1.69
13044047--13044105	27	2.3	25	80	11	66	74	5	5	15	1.17
13044406--13044440	18	1.9	18	88	11	54	77	0	17	5	0.96
13047964--13047990	13	2.1	13	100	0	54	14	7	0	77	0.97
13056382--13056462	41	2.0	41	95	0	144	29	11	25	33	1.91
13063532--13063571	22	1.9	21	85	10	55	37	12	12	37	1.81
13064371--13064458	9	9.9	9	68	19	51	60	1	1	37	1.12
13064371--13064441	34	2.1	34	84	5	90	60	0	1	38	1.06
13065743--13065979	87	2.7	86	77	10	225	26	15	8	49	1.73
13065717--13066006	29	10.0	29	73	8	169	26	14	8	50	1.71
13067198--13067252	3	18.0	3	92	3	92	32	1	1	63	1.15
13074275--13074343	35	2.0	35	85	2	95	36	2	17	43	1.64
13075336--13075622	29	9.9	29	73	8	156	23	16	11	48	1.78
13075445--13075622	28	6.2	28	77	8	144	23	18	11	47	1.80
13075425--13075609	86	2.2	85	81	4	203	23	17	10	48	1.79
13075445--13075592	58	2.6	56	84	4	179	22	19	11	45	1.82
13076685--13076726	22	2.0	21	81	13	50	45	0	19	35	1.50
13079554--13079597	3	14.7	3	100	0	88	34	0	0	65	0.93
13082159--13082217	27	2.1	27	82	14	68	59	3	0	37	1.14
13083215--13083260	20	2.3	20	96	3	85	45	13	15	26	1.82
13085883--13085927	3	14.7	3	90	4	72	68	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13088418--13088468	25	2.0	25	88	0	75	47	19	5	27	1.73
13091176--13091213	20	2.0	20	89	5	60	28	13	7	50	1.69
13091502--13091544	21	2.0	21	86	4	59	39	6	6	46	1.58
13092013--13092063	19	2.7	19	93	0	84	47	21	0	31	1.51
13098170--13098332	41	3.9	41	81	8	170	37	10	25	26	1.88
13106147--13106225	40	2.0	40	84	0	104	32	20	20	26	1.97
13106430--13106455	11	2.4	11	100	0	52	57	7	0	34	1.27
13122059--13122096	20	1.9	19	89	5	58	50	5	10	34	1.59
13122623--13122653	16	1.9	16	93	0	53	67	3	0	29	1.06
13122763--13122811	20	2.4	21	79	3	55	65	4	4	26	1.29
13123056--13123095	21	2.0	20	85	5	53	45	22	7	25	1.78
13123043--13123098	20	2.8	19	76	10	58	44	25	5	25	1.75
13125086--13125134	18	2.7	18	77	3	53	46	4	0	48	1.20
13134878--13134940	25	2.6	24	83	11	76	73	3	15	7	1.20
13138330--13138380	21	2.4	21	86	0	75	27	3	13	54	1.56
13139210--13139250	17	2.3	18	91	8	75	21	4	0	73	1.02
13141043--13141113	22	3.2	22	77	0	79	38	12	18	30	1.88
13143179--13143245	29	2.3	29	89	5	100	29	19	2	47	1.64
13146616--13146734	58	2.1	58	95	3	213	32	15	7	43	1.75
13153139--13153173	18	1.9	18	88	0	52	0	37	0	62	0.95
13153357--13153402	21	2.2	21	96	0	83	17	23	4	54	1.61
13168024--13168095	31	2.4	31	90	2	110	45	15	18	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13179052--13179103	21	2.5	21	87	0	77	23	19	23	34	1.96
13191147--13191222	39	1.9	41	81	7	95	31	5	6	56	1.47
13191644--13191676	10	3.3	10	95	0	57	33	0	9	57	1.30
13191665--13191712	24	2.0	24	87	0	69	41	6	4	47	1.48
13192711--13192743	16	2.1	16	88	11	50	54	0	0	45	0.99
13193676--13193815	28	4.9	28	73	18	101	65	4	2	27	1.26
13193783--13193825	19	2.3	18	80	11	50	65	4	4	25	1.32
13193674--13193824	10	15.6	10	66	15	50	64	3	2	28	1.24
13194145--13194179	4	8.8	4	87	0	52	25	5	17	51	1.67
13194145--13194179	16	2.2	16	100	0	70	25	5	17	51	1.67
13194864--13194916	9	5.7	9	80	8	61	30	3	3	62	1.30
13194857--13194916	19	3.2	18	81	9	66	31	5	3	60	1.35
13196531--13196944	23	18.1	23	85	5	563	46	13	5	34	1.66
13197346--13197429	36	2.3	36	75	4	89	33	28	8	29	1.86
13199062--13199094	14	2.4	14	90	10	50	57	9	6	27	1.53
13207585--13207642	29	2.0	29	96	3	109	13	17	10	58	1.62
13207783--13207847	32	2.1	32	91	2	105	24	9	3	63	1.39
13207970--13208324	9	38.7	9	70	20	163	21	3	18	55	1.58
13207970--13208350	28	14.3	27	66	23	114	22	3	18	55	1.57
13207998--13208160	33	5.5	30	71	22	64	20	3	19	55	1.58
13208028--13208373	86	3.9	89	75	17	287	22	3	18	55	1.58
13208080--13208373	86	3.5	85	77	14	313	22	3	18	56	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13208184--13208331	79	1.9	77	82	8	183	24	4	16	55	1.58
13208269--13208348	24	3.3	25	73	18	78	26	1	15	57	1.46
13211674--13211748	11	6.5	11	76	8	69	4	25	0	70	1.04
13211676--13211740	12	5.5	12	76	10	62	4	23	0	72	1.03
13212148--13212177	15	2.0	15	93	0	51	43	33	3	20	1.68
13212214--13212282	10	6.7	10	73	5	57	17	21	30	30	1.96
13212214--13212309	21	4.3	21	74	12	77	16	20	29	33	1.95
13212269--13212313	7	6.6	7	82	5	56	15	17	26	40	1.90
13212269--13212313	14	3.3	14	87	6	74	15	17	26	40	1.90
13212276--13212317	20	2.1	20	90	0	66	14	19	23	42	1.87
13213363--13213395	3	11.3	3	93	6	59	30	0	0	69	0.88
13230458--13230546	24	3.7	24	83	1	106	29	26	20	23	1.99
13234333--13234420	20	4.4	19	70	11	59	45	17	5	31	1.71
13234351--13234454	40	2.5	40	80	7	102	40	17	6	35	1.76
13234391--13234455	20	3.2	20	85	6	96	36	15	7	40	1.76
13234495--13234606	20	5.6	20	71	12	77	44	15	6	33	1.71
13235020--13235084	30	2.2	30	94	5	114	23	0	13	63	1.30
13235474--13235518	19	2.3	20	81	11	67	37	8	13	40	1.76
13235532--13235580	19	2.6	19	77	6	55	38	6	8	46	1.58
13235577--13235629	20	2.7	20	79	5	63	37	5	7	49	1.55
13235920--13235976	20	2.9	19	79	7	60	49	1	8	40	1.44
13238867--13238925	12	4.8	12	82	16	68	22	44	20	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13238880--13238924	23	2.0	23	100	0	90	22	40	22	15	1.91
13238951--13238989	17	2.3	17	90	0	60	20	41	20	17	1.91
13239106--13239136	14	2.1	15	94	5	55	61	19	19	0	1.35
13242595--13242761	58	2.9	58	84	5	221	43	0	2	53	1.18
13242719--13242770	25	2.0	26	85	10	72	48	0	0	51	1.00
13246982--13247014	6	5.5	6	86	13	50	51	0	45	3	1.16
13253517--13253550	17	1.9	18	88	5	52	41	17	2	38	1.65
13255995--13256073	34	2.3	35	83	12	103	39	0	5	55	1.22
13259593--13259667	11	6.5	11	76	8	69	4	25	0	70	1.04
13259595--13259659	12	5.5	12	76	10	62	4	23	0	72	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125