genome.fa.s6.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  99  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29840701--29840758	22	2.6	22	83	0	80	62	10	8	18	1.53
29842223--29842265	18	2.4	18	88	7	61	46	0	0	53	1.00
29850371--29850398	7	4.0	7	100	0	56	14	0	0	85	0.59
29859446--29859611	88	1.9	89	92	3	282	36	15	21	27	1.93
29864252--29864283	16	2.0	16	93	0	55	71	6	15	6	1.26
29867850--29867896	22	2.1	22	84	7	60	55	14	6	23	1.63
29869117--29869175	31	1.9	31	86	6	84	47	13	10	28	1.75
29871561--29871625	29	2.2	30	86	8	89	40	1	9	49	1.44
29879650--29879694	22	2.1	22	95	4	83	37	0	0	62	0.96
29880343--29880503	63	2.6	63	87	2	227	30	10	16	42	1.81
29880406--29880523	31	3.8	31	68	8	89	30	11	16	42	1.82
29891916--29891958	19	2.2	20	87	4	61	53	0	0	46	1.00
29891920--29891966	25	1.9	24	83	12	60	55	0	2	42	1.12
29909584--29909679	47	2.0	49	85	6	133	42	16	16	23	1.88
29911822--29911892	29	2.5	28	71	15	72	30	5	12	50	1.63
29912346--29912417	4	18.0	4	94	0	72	25	0	33	41	1.55
29917749--29917821	37	2.0	37	86	0	101	41	5	4	49	1.45
29919521--29919555	11	3.3	11	88	4	54	31	0	0	68	0.90
29919695--29919768	32	2.3	32	81	4	87	40	20	9	29	1.84
29920848--29920884	18	2.1	18	89	0	56	8	24	24	43	1.81
29930795--29930853	20	3.0	21	85	9	79	64	6	0	28	1.19
29930793--29930853	10	6.2	10	71	17	56	63	6	0	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29939217--29939241	8	3.1	8	100	0	50	60	0	40	0	0.97
29947005--29947059	17	3.5	16	73	19	53	58	1	10	29	1.43
29947005--29947113	30	3.6	30	86	2	121	60	3	8	27	1.42
29947589--29947654	24	2.7	23	81	4	60	10	33	31	24	1.89
29949399--29949459	22	2.8	22	89	0	86	21	4	31	42	1.74
29949597--29949746	45	3.4	44	66	22	116	46	5	6	42	1.51
29949552--29950105	86	6.5	85	90	3	841	46	4	4	43	1.46
29949552--29950105	168	3.3	170	91	3	886	46	4	4	43	1.46
29950230--29950264	17	2.1	16	89	5	52	48	8	0	42	1.33
29954092--29954148	28	2.1	28	93	6	100	45	7	7	40	1.58
29954117--29954324	60	3.4	59	82	5	238	38	12	15	33	1.85
29954232--29954420	97	1.9	99	86	10	273	40	13	13	32	1.83
29960854--29960894	18	2.2	20	86	8	59	51	0	4	43	1.23
29961412--29961450	21	1.9	21	84	5	53	20	20	12	46	1.83
29962652--29962706	27	2.0	28	82	10	69	50	3	0	45	1.19
29968583--29968615	7	5.0	7	85	14	52	72	0	0	27	0.85
29973008--29973432	69	6.2	69	81	4	412	32	22	21	23	1.98
29973014--29973367	138	2.6	138	86	0	467	32	22	22	23	1.98
29973034--29973432	207	1.9	207	82	2	505	32	23	21	22	1.98
29973517--29973671	42	3.7	42	83	1	197	33	21	13	30	1.92
29973502--29973671	84	2.0	82	88	2	250	34	21	13	30	1.92
29974706--29974968	130	2.0	130	93	0	454	23	31	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29984452--29984491	2	20.0	2	100	0	80	50	0	0	50	1.00
29994520--29994553	16	2.1	17	88	5	52	11	14	2	70	1.27
29995630--29995690	24	2.5	24	89	0	86	14	32	9	42	1.79
29995682--29996163	7	70.4	7	82	6	368	6	40	12	39	1.70
29995682--29996219	14	39.0	14	78	8	392	7	40	12	39	1.72
29995778--29995821	23	1.9	23	90	0	70	18	34	9	38	1.82
29996039--29996089	24	2.1	25	85	10	70	9	31	11	47	1.73
29996000--29996082	18	4.5	18	83	3	103	10	34	10	43	1.75
29995673--29996218	21	26.8	20	78	10	325	7	40	12	39	1.72
29996229--29996266	20	1.9	20	88	0	58	47	28	0	23	1.52
29999665--29999703	20	2.0	20	100	0	78	46	25	7	20	1.77
30005311--30005364	15	3.6	15	75	9	56	62	3	3	29	1.29
30009799--30009850	14	3.6	14	72	23	54	63	0	5	30	1.18
30021689--30021823	40	3.4	38	73	12	96	30	28	20	21	1.98
30021721--30021824	37	2.7	38	76	5	93	31	26	19	22	1.97
30027072--30027206	40	3.4	38	73	12	96	30	28	20	21	1.98
30027104--30027207	37	2.7	38	76	5	93	31	26	19	22	1.97
30030335--30030478	70	2.1	70	97	0	270	45	6	16	30	1.74
30055944--30055981	18	2.1	18	90	0	58	34	5	10	50	1.59
30065810--30065852	22	1.9	23	85	4	61	74	2	9	13	1.16
30065896--30065931	17	2.1	17	94	0	63	30	0	0	69	0.89
30066578--30066602	12	2.1	12	100	0	50	84	0	8	8	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30072828--30072902	35	2.1	35	97	0	141	42	20	10	26	1.84
30074208--30074254	22	2.2	22	88	3	69	72	4	8	14	1.24
30076631--30076682	22	2.5	21	81	12	54	75	0	1	23	0.91
30076628--30076683	14	3.8	14	77	17	51	73	0	1	25	0.93
30079040--30079088	17	2.9	17	82	8	64	36	2	6	55	1.37
30079100--30079140	21	2.0	21	85	0	55	56	21	4	17	1.60
30079672--30079723	3	16.3	3	77	18	52	61	0	0	38	0.96
30079922--30080064	50	3.0	48	78	13	134	60	5	10	23	1.51
30080197--30080258	29	2.1	29	85	8	81	48	6	17	27	1.72
30080757--30080938	30	6.2	30	71	10	115	36	23	3	36	1.73
30080735--30080939	59	3.5	59	79	2	198	37	22	3	36	1.73
30080768--30081060	29	10.0	30	66	17	86	35	23	4	35	1.75
30080915--30081058	57	2.5	60	81	10	192	34	22	4	38	1.75
30080915--30081075	58	2.8	59	81	10	190	35	21	5	37	1.77
30080906--30081076	29	5.9	29	70	19	88	34	22	5	37	1.77
30087059--30087088	11	2.7	11	100	0	60	36	6	26	30	1.82
30092916--30092958	17	2.5	17	100	0	86	23	23	32	20	1.98
30092956--30093636	209	3.3	207	83	4	850	36	19	22	22	1.95
30093939--30094022	6	14.8	6	71	20	65	44	1	3	51	1.26
30093941--30094022	17	4.9	15	76	19	67	42	1	3	52	1.26
30093980--30094022	23	1.9	22	95	4	77	46	0	0	53	1.00
30094651--30094700	18	2.9	18	88	5	68	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30094653--30094707	18	3.2	17	82	10	67	58	0	1	40	1.09
30094896--30095034	48	2.9	48	81	8	133	59	4	10	25	1.49
30095679--30095879	30	6.8	30	75	8	198	36	26	4	31	1.78
30095675--30095883	29	7.1	29	76	13	196	35	28	4	31	1.78
30095675--30095879	59	3.4	58	86	4	293	36	27	4	31	1.78
30095865--30096032	30	5.7	29	69	11	117	36	23	5	34	1.78
30095675--30095997	59	5.5	59	81	8	281	36	26	4	32	1.77
30095685--30095947	30	8.9	29	66	17	107	37	26	3	32	1.74
30097489--30097518	15	1.9	16	93	6	53	70	0	13	16	1.18
30100732--30101328	161	3.7	161	92	1	923	30	15	18	35	1.92
30100732--30101328	321	1.9	321	89	2	939	30	15	18	35	1.92
30102268--30102347	32	2.4	33	87	8	108	45	12	8	33	1.73
30104342--30104380	15	2.6	15	83	0	51	25	53	0	20	1.45
30106174--30106265	45	2.0	46	85	8	127	42	31	3	22	1.70
30114381--30114415	3	11.7	3	100	0	70	31	0	0	68	0.90
30115082--30115113	15	2.1	16	94	5	57	81	0	18	0	0.70
30123560--30123611	21	2.5	21	78	6	61	32	28	11	26	1.91
30124418--30124780	201	1.9	195	82	5	464	25	25	19	29	1.99
30126853--30126882	7	4.4	7	95	4	53	26	0	0	73	0.84
30127018--30127068	26	2.0	26	84	7	68	35	1	1	60	1.19
30128983--30129034	20	2.6	19	81	6	59	30	1	3	63	1.23
30129822--30129872	23	2.2	23	78	0	57	56	1	1	39	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30132852--30132933	43	1.9	43	85	5	112	19	57	2	20	1.52
30137767--30137805	19	2.1	18	85	4	51	79	2	15	2	0.95
30138940--30139196	100	2.6	100	83	2	291	42	20	22	14	1.88
30139126--30139299	49	3.5	49	77	8	156	44	19	22	13	1.85
30139218--30139329	49	2.3	49	81	3	127	39	21	25	14	1.91
30143016--30143172	59	2.7	58	88	2	215	34	1	31	32	1.69
30143046--30143180	29	4.7	28	72	19	91	36	0	28	34	1.63
30143076--30143180	29	3.6	29	77	15	110	36	0	28	35	1.58
30143302--30143614	162	1.9	162	93	0	536	42	13	17	26	1.86
30145173--30145268	6	16.8	6	75	14	87	55	4	0	40	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125