genome.fa.s6.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  82  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25723987--25724367	59	6.5	58	78	8	217	35	26	3	33	1.73
25724663--25725023	98	3.7	98	91	0	571	28	18	15	38	1.90
25736387--25736715	172	1.9	172	82	3	412	36	17	22	24	1.95
25736521--25737010	209	2.3	208	87	2	696	36	16	22	24	1.94
25736894--25737106	86	2.5	86	85	1	275	34	16	24	24	1.95
25736685--25737305	295	2.1	295	89	1	942	35	17	23	23	1.95
25736980--25737426	209	2.1	209	85	0	599	37	18	21	22	1.94
25737852--25737892	17	2.4	17	87	4	55	43	0	2	53	1.13
25737823--25737877	29	1.9	28	85	3	74	34	0	7	58	1.26
25739660--25740035	118	3.2	118	78	11	378	35	24	2	36	1.71
25739660--25740092	29	14.8	29	77	10	269	35	25	2	36	1.71
25739696--25740083	176	2.2	176	78	5	406	36	26	2	35	1.70
25740363--25740628	100	2.7	99	92	2	446	28	20	15	36	1.93
25745792--25745909	58	2.0	58	100	0	236	36	13	22	27	1.92
25748597--25748651	21	2.6	21	85	5	67	27	16	23	32	1.96
25750311--25750361	24	2.1	24	88	0	75	54	25	1	17	1.53
25753352--25753393	21	2.0	21	95	0	75	50	14	0	35	1.43
25756448--25756661	78	2.7	78	80	5	243	41	8	14	35	1.77
25764222--25764518	40	7.2	40	74	6	177	44	17	20	17	1.87
25764291--25764513	42	5.4	42	76	7	179	46	17	21	14	1.83
25764247--25764518	82	3.3	81	77	8	289	46	18	20	15	1.84
25766804--25766828	13	1.9	13	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25773463--25773598	43	3.2	43	76	4	139	31	16	24	27	1.96
25776197--25776243	24	2.0	24	86	0	67	27	6	0	65	1.16
25776197--25776251	24	2.2	24	80	3	65	30	5	0	63	1.17
25780837--25780878	21	2.0	21	100	0	84	38	4	9	47	1.57
25781161--25781432	94	2.9	94	85	3	368	29	18	20	31	1.96
25782061--25782108	24	2.0	23	92	4	78	29	8	25	37	1.85
25783673--25783699	8	3.4	8	100	0	54	25	0	22	51	1.48
25783673--25783699	12	2.2	12	100	0	54	25	0	22	51	1.48
25785537--25785563	11	2.5	11	100	0	54	66	0	11	22	1.22
25785906--25786507	95	6.4	94	69	14	342	25	24	17	33	1.96
25785793--25786233	189	2.3	189	87	1	625	24	23	18	33	1.97
25785816--25786129	94	3.3	94	68	15	232	24	23	18	34	1.96
25786190--25786664	189	2.5	188	84	5	627	24	26	17	32	1.96
25785953--25786517	284	2.0	284	84	1	738	25	25	16	32	1.96
25787061--25787286	112	2.0	112	86	1	319	38	11	20	30	1.87
25787594--25787658	9	7.3	9	81	8	80	0	16	0	83	0.66
25787592--25787650	7	8.1	7	75	17	50	0	18	0	81	0.69
25794847--25795033	52	3.6	52	90	1	286	36	23	14	25	1.93
25796963--25796996	17	1.9	17	88	5	50	11	2	32	52	1.53
25797873--25797945	21	3.5	21	75	14	87	42	26	9	21	1.83
25802475--25802557	9	9.5	8	73	18	51	43	2	3	50	1.32
25807937--25807975	17	2.3	17	86	0	51	41	0	5	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25808700--25808733	16	2.1	16	100	0	68	55	0	0	44	0.99
25810021--25810067	15	3.1	16	78	12	62	53	6	12	27	1.63
25810022--25810082	30	2.0	30	87	9	88	54	8	14	22	1.67
25810261--25810547	30	9.6	30	86	5	325	39	2	20	37	1.66
25810940--25810976	5	7.2	5	90	3	56	2	21	54	21	1.58
25811261--25811309	18	2.6	19	78	12	57	2	24	0	73	0.94
25811266--25811313	25	1.9	25	86	0	69	4	20	0	75	0.97
25811265--25811309	16	2.7	15	83	16	54	2	22	0	75	0.91
25812421--25812479	6	9.8	6	73	14	50	55	1	3	38	1.26
25812436--25812463	14	2.0	14	100	0	56	57	0	7	35	1.26
25812828--25813364	76	7.0	76	93	1	887	32	17	15	34	1.91
25812828--25813455	154	4.0	152	89	4	889	32	17	15	34	1.92
25813288--25813458	91	1.9	89	95	2	306	28	18	18	35	1.94
25825449--25825509	30	2.0	30	84	9	79	54	8	16	21	1.68
25825548--25825620	29	2.6	29	84	6	87	28	10	31	28	1.91
25825689--25826005	30	10.6	30	84	7	373	38	1	20	39	1.62
25825689--25826005	59	5.3	59	86	7	385	38	1	20	39	1.62
25826702--25826744	16	2.5	18	79	20	56	4	20	0	74	1.00
25826702--25826743	17	2.5	17	82	17	52	4	21	0	73	1.01
25827025--25827053	15	1.9	15	100	0	58	37	0	0	62	0.96
25827880--25827907	14	2.0	14	100	0	56	64	0	7	28	1.20
25827867--25827925	31	1.9	31	92	0	100	59	1	3	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25828952--25829131	30	6.1	30	76	11	122	40	25	1	33	1.63
25828948--25829142	29	6.7	29	76	13	152	40	26	1	32	1.63
25828948--25829150	60	3.5	60	83	4	227	38	26	0	33	1.63
25828958--25829238	29	9.6	29	74	11	144	36	25	2	35	1.70
25836568--25836686	60	2.0	60	88	0	175	37	15	9	36	1.80
25836772--25836905	60	2.2	61	78	7	148	38	8	17	34	1.82
25836794--25836927	60	2.2	60	87	0	187	36	8	17	38	1.79
25837260--25837307	19	2.3	20	83	16	55	66	4	2	27	1.21
25837568--25837807	124	1.9	125	87	4	351	47	11	8	32	1.70
25841002--25841214	60	3.5	60	81	7	218	28	18	15	37	1.92
25842060--25842140	17	4.8	17	75	0	81	37	3	6	53	1.44
25842040--25842092	24	2.2	24	77	12	56	35	5	3	54	1.42
25842110--25842151	17	2.4	17	88	4	57	47	0	2	50	1.14
25843949--25844083	6	23.0	6	74	15	113	47	0	1	50	1.15
25843947--25844012	27	2.4	27	100	0	132	37	0	3	59	1.13
25843939--25844052	11	10.5	11	75	16	80	42	0	2	54	1.14
25843949--25844083	37	3.6	36	80	12	132	47	0	1	50	1.15
25844003--25844083	31	2.6	30	84	9	92	54	1	0	44	1.08
25844112--25844164	14	3.9	14	87	9	83	39	28	16	15	1.89
25844112--25844164	26	2.0	27	88	7	81	39	28	16	15	1.89
25844208--25844247	20	2.0	21	90	5	64	20	45	17	17	1.86
25845669--25845978	162	1.9	163	89	3	484	24	17	12	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25846075--25846270	30	6.6	30	86	6	276	38	24	2	34	1.69
25846065--25846294	90	2.6	88	85	7	295	37	23	3	35	1.71
25846253--25846563	60	5.2	59	84	8	389	31	27	5	35	1.79
25846381--25846474	28	3.2	28	66	28	70	28	27	6	37	1.81
25846253--25846563	118	2.6	119	84	8	427	31	27	5	35	1.79
25846403--25846563	29	5.5	30	65	17	79	31	27	4	36	1.78
25858496--25859055	68	8.2	66	86	7	443	35	17	20	26	1.95
25858519--25858892	168	2.2	167	86	6	551	36	18	20	25	1.94
25858720--25859096	68	5.5	68	94	3	641	35	18	19	27	1.95
25858720--25859096	139	2.8	137	93	3	654	35	18	19	27	1.95
25859371--25859456	11	7.5	11	76	16	77	44	0	2	53	1.13
25859381--25859487	6	18.0	6	77	12	105	49	0	0	48	1.13
25859516--25859568	14	3.9	14	87	9	83	39	28	16	15	1.89
25859516--25859568	26	2.0	27	88	7	81	39	28	16	15	1.89
25859612--25859651	20	2.0	21	90	5	64	20	45	17	17	1.86
25860859--25860965	30	3.5	30	92	3	171	37	25	3	33	1.74
25860968--25861244	29	9.5	29	65	14	124	31	27	5	36	1.79
25860968--25861251	58	4.9	58	88	3	367	30	28	5	35	1.81
25860965--25861286	116	2.8	114	80	7	344	29	27	6	36	1.83
25863780--25863834	17	3.5	16	71	19	53	61	3	12	21	1.46
25863786--25863878	30	3.1	30	85	4	107	62	4	8	24	1.42
25864355--25864413	24	2.5	24	77	0	64	10	30	35	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25864364--25864408	12	3.8	12	75	0	54	4	35	35	24	1.76
25865846--25866201	60	6.0	61	73	6	248	37	13	18	30	1.90
25866852--25866891	21	1.9	21	94	0	71	50	5	5	40	1.46
25871842--25871866	6	4.2	6	100	0	50	16	0	0	84	0.63
25873869--25873898	15	1.9	15	93	6	51	70	16	0	13	1.18
25875407--25875546	68	2.1	68	94	0	244	27	11	25	35	1.90
25876011--25876081	38	1.9	36	86	11	99	39	2	0	57	1.13
25877099--25877140	22	2.0	22	86	13	61	50	7	4	38	1.51
25877256--25877290	17	2.1	17	100	0	70	60	5	5	28	1.43
25877334--25877371	17	2.4	17	91	8	62	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125