genome.fa.s6.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  23  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6937414--6937456	22	2.0	22	86	9	61	48	0	0	51	1.00
6937549--6937574	2	13.0	2	100	0	52	50	0	0	50	1.00
6943696--6943757	23	2.6	24	78	14	65	53	4	3	38	1.39
6950321--6950364	22	2.0	22	82	8	54	65	0	0	34	0.93
6960891--6960953	23	2.8	23	83	11	85	15	33	23	26	1.95
6960946--6960985	19	2.1	19	95	0	71	17	20	15	47	1.83
6964822--6965164	52	6.6	52	84	4	406	27	17	22	32	1.96
6964822--6965164	105	3.3	105	88	4	473	27	17	22	32	1.96
6964820--6965164	157	2.2	157	85	6	466	27	17	22	32	1.96
6977823--6978113	52	5.6	52	75	7	257	27	15	21	36	1.93
6977882--6978113	105	2.2	105	83	3	288	27	15	21	35	1.94
6981980--6982038	24	2.5	24	100	0	118	27	8	18	45	1.78
6989907--6990046	56	2.5	57	88	5	203	13	12	27	46	1.79
6989914--6990058	28	5.1	28	84	5	184	14	11	26	46	1.79
6990228--6990307	30	2.7	29	78	7	88	18	21	23	36	1.95
6994901--6995288	80	4.8	80	84	2	478	22	17	25	34	1.96
6997534--6997585	24	2.2	24	82	3	61	59	1	1	36	1.19
6997908--6997939	2	16.0	2	100	0	64	0	50	0	50	1.00
7003673--7003717	18	2.5	18	82	7	56	55	0	0	44	0.99
7007974--7008021	19	2.6	19	73	3	53	66	6	0	27	1.15
7012084--7012691	313	1.9	312	89	0	928	30	18	18	32	1.95
7012919--7012961	7	6.6	7	87	12	65	55	0	44	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7013544--7014204	319	2.1	307	90	5	1000	37	15	9	36	1.81
7017684--7017724	21	1.9	22	90	5	66	39	2	0	58	1.11
7017783--7017811	9	3.3	9	95	4	51	48	0	0	51	1.00
7020634--7020801	31	5.5	31	67	9	114	25	15	11	47	1.80
7020634--7020825	61	3.2	60	82	8	239	25	14	11	48	1.78
7021026--7021103	31	2.5	31	85	2	102	43	12	16	26	1.84
7023201--7023266	25	2.6	25	88	4	89	33	18	19	28	1.95
7029392--7029455	29	2.1	29	82	5	74	28	14	14	43	1.83
7039070--7039513	225	2.0	225	98	0	861	29	19	14	36	1.91
7041098--7041147	18	2.9	17	88	5	66	40	0	6	54	1.25
7041098--7041155	16	3.4	17	83	9	57	39	1	5	53	1.33
7043064--7043676	59	10.4	60	76	9	539	32	30	3	33	1.73
7043024--7043629	118	5.2	117	81	4	682	32	30	3	33	1.74
7043032--7043305	30	9.3	29	65	21	106	32	29	4	33	1.76
7043064--7043671	293	2.1	293	80	6	696	32	30	2	33	1.73
7043061--7043671	29	20.8	29	65	21	131	32	30	2	33	1.73
7051330--7051362	16	2.1	16	100	0	66	48	27	0	24	1.51
7055683--7056314	200	3.1	200	86	2	858	36	19	22	21	1.95
7056653--7056677	13	1.9	13	100	0	50	40	0	8	52	1.31
7058593--7058999	30	13.8	30	68	23	149	32	29	3	34	1.75
7058625--7059064	59	7.4	59	77	8	385	32	29	3	34	1.74
7058592--7059060	118	4.0	117	85	6	567	32	29	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7058922--7059023	29	3.5	28	77	17	93	35	24	0	39	1.62
7058592--7059048	177	2.6	175	77	6	456	32	29	3	34	1.74
7058933--7059024	29	3.1	28	78	18	98	31	26	1	41	1.63
7076935--7077015	29	2.7	31	69	5	78	23	23	25	27	2.00
7078218--7078251	15	2.3	15	100	0	68	17	0	11	70	1.16
7080894--7080937	21	2.1	21	95	0	79	31	9	6	52	1.59
7082977--7083015	11	3.4	12	82	13	55	48	17	7	25	1.74
7084292--7084473	96	1.9	96	81	4	224	36	13	18	31	1.89
7084687--7084750	28	2.2	29	78	10	69	25	7	28	39	1.83
7084758--7085003	29	8.3	29	85	7	264	40	1	23	35	1.63
7084758--7085003	59	4.2	57	84	6	253	40	1	23	35	1.63
7084823--7084903	15	5.5	15	66	16	62	43	0	19	37	1.52
7084823--7084927	14	7.3	14	66	17	63	42	0	20	37	1.52
7084799--7085026	30	7.7	30	88	4	189	39	2	21	36	1.66
7086830--7086864	13	2.7	13	86	0	52	45	2	0	51	1.16
7086832--7086890	6	10.0	6	73	10	50	50	3	0	45	1.18
7086852--7086890	17	2.3	17	86	0	60	56	2	0	41	1.13
7087550--7087806	121	2.2	119	82	6	299	19	20	22	37	1.94
7088031--7088137	39	2.8	38	77	8	119	28	19	28	24	1.99
7088032--7088177	39	3.8	39	72	9	111	26	19	28	25	1.99
7088023--7088174	78	2.0	77	85	3	207	25	18	28	26	1.98
7088277--7088872	92	6.5	92	92	0	971	32	17	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7088867--7089111	101	2.4	101	84	0	310	14	24	20	41	1.89
7090034--7090115	1	82.0	1	77	0	83	0	2	8	89	0.58
7090043--7090115	29	2.5	28	91	4	110	0	1	9	89	0.56
7090034--7090115	40	2.1	40	88	6	123	0	2	8	89	0.58
7090035--7090103	32	2.1	33	89	7	106	0	1	8	89	0.53
7090040--7090115	35	2.2	35	88	6	111	0	1	9	89	0.54
7095722--7095903	30	6.0	30	88	7	246	35	2	27	34	1.71
7096855--7096885	14	2.1	15	94	5	55	35	0	0	64	0.94
7097693--7097778	17	5.3	17	75	10	54	50	2	1	46	1.21
7097701--7097752	13	3.7	13	74	18	50	48	1	0	50	1.12
7097701--7097778	30	2.7	29	86	4	104	51	2	0	46	1.14
7097703--7097778	6	13.0	6	72	15	61	51	2	0	46	1.15
7099396--7099441	25	1.9	25	86	8	69	32	4	6	56	1.45
7102216--7102257	20	2.0	21	90	4	68	14	23	9	52	1.71
7112179--7112222	15	2.7	16	82	13	54	65	0	0	34	0.93
7114967--7115145	62	3.3	49	75	18	169	58	0	9	31	1.35
7115017--7115196	62	3.0	60	82	7	229	57	0	8	33	1.30
7114956--7115193	122	2.0	112	87	9	334	57	0	8	32	1.33
7117092--7117136	8	5.4	8	82	10	54	84	2	2	11	0.80
7117093--7117133	9	4.6	9	84	9	57	87	2	2	7	0.70
7117093--7117133	20	2.0	20	85	0	55	87	2	2	7	0.70
7117092--7117139	17	2.8	17	87	0	69	83	4	2	10	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7121461--7121575	26	4.4	26	74	0	95	24	12	21	41	1.87
7121455--7121575	52	2.3	52	88	0	188	23	13	23	39	1.90
7121897--7121965	26	2.7	26	79	0	75	39	14	13	33	1.85
7124457--7124521	32	2.0	32	90	0	103	36	7	13	41	1.74
7125126--7125192	28	2.4	28	94	0	116	29	16	8	44	1.78
7128072--7128104	2	16.5	2	100	0	66	0	48	0	51	1.00
7128518--7128594	39	2.0	40	92	2	129	32	14	20	32	1.93
7133575--7133622	23	2.1	22	81	11	53	70	2	0	27	0.98
7147176--7147455	153	1.8	153	90	0	452	35	15	17	32	1.91
7147922--7148149	59	3.9	58	85	6	300	34	3	28	33	1.76
7147955--7148149	29	6.6	28	67	18	96	34	4	28	33	1.76
7147925--7148129	29	7.0	29	67	21	97	34	3	28	33	1.76
7147896--7148133	30	8.1	29	67	18	91	32	3	29	34	1.75
7149187--7149220	10	3.4	10	87	0	50	41	0	0	58	0.98
7149462--7149501	21	1.9	21	94	0	71	22	12	30	35	1.91
7149984--7150008	13	1.9	13	100	0	50	52	8	0	40	1.31
7149952--7149999	17	2.8	17	87	6	62	56	6	0	37	1.25
7150354--7150778	200	2.1	201	87	1	602	22	23	19	34	1.96
7150605--7150929	151	2.2	151	90	0	506	21	22	22	33	1.97
7163136--7163229	30	3.2	28	70	19	75	32	1	29	36	1.65
7163148--7163241	29	3.2	29	75	19	104	31	1	30	36	1.65
7163133--7163273	59	2.4	60	88	4	198	30	0	31	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7163147--7163239	30	3.1	30	74	20	104	32	1	29	37	1.65
7164324--7164357	10	3.4	10	87	0	50	41	0	0	58	0.98
7164599--7164643	21	2.1	21	87	0	63	26	11	26	35	1.90
7165073--7165112	18	2.3	18	86	4	55	55	5	0	40	1.22
7165097--7165121	13	1.9	13	100	0	50	52	8	0	40	1.31
7165777--7165826	10	5.2	10	76	7	50	30	0	2	68	1.01
7165777--7165861	19	4.8	18	73	16	61	32	0	3	63	1.11
7165804--7165850	24	2.0	24	86	0	67	40	0	2	57	1.11
7169076--7169144	11	5.8	12	72	14	63	42	2	1	53	1.24
7169076--7169144	6	11.7	6	73	14	63	42	2	1	53	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125