genome.fa.s6.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  38  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11431068--11431097	14	2.1	14	93	0	51	30	3	20	46	1.66
11432139--11433173	42	25.4	42	80	8	1070	25	17	26	30	1.97
11432139--11433173	81	12.7	82	82	6	1067	25	17	26	30	1.97
11432982--11433148	40	4.3	39	71	13	121	23	17	22	35	1.95
11432901--11433169	78	3.4	77	83	6	301	25	16	24	33	1.96
11433423--11433696	49	5.6	49	78	0	278	22	30	12	33	1.92
11433423--11433728	98	3.1	98	86	0	414	22	29	13	34	1.92
11434134--11434437	112	2.9	103	84	9	378	37	9	22	30	1.86
11434753--11434820	9	7.8	9	74	12	52	2	17	0	79	0.86
11435667--11435721	13	3.9	14	72	23	53	1	18	1	78	0.94
11439806--11439914	30	3.7	29	78	6	103	35	7	22	33	1.82
11439835--11439959	30	4.2	30	81	6	121	36	8	20	34	1.82
11441529--11441666	68	2.0	68	94	0	240	47	18	7	26	1.74
11442321--11442522	108	1.9	109	83	5	266	36	21	19	21	1.95
11442360--11442552	34	5.5	34	69	13	124	35	23	20	20	1.96
11444251--11444302	21	2.3	23	80	6	63	36	23	9	30	1.87
11447182--11447231	17	3.0	16	78	18	57	50	8	20	22	1.74
11449646--11450762	555	2.0	555	90	1	1740	26	21	17	34	1.96
11458006--11458041	10	3.7	10	96	3	65	63	0	30	5	1.17
11463860--11463923	23	2.8	22	81	6	74	18	26	42	12	1.86
11464000--11464042	12	3.4	12	81	12	50	67	0	32	0	0.91
11467894--11467938	23	2.0	23	86	0	63	46	20	6	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11475019--11475061	22	1.9	23	85	4	61	16	20	13	48	1.80
11475757--11475812	24	2.3	25	82	14	73	25	23	7	44	1.78
11479802--11479917	48	2.4	48	85	0	151	40	14	18	25	1.89
11479802--11479914	24	4.7	24	77	0	118	40	15	19	24	1.90
11482532--11482574	21	2.0	21	100	0	86	34	18	13	32	1.90
11485456--11485496	17	2.4	17	80	19	50	51	17	17	14	1.77
11500178--11500205	14	2.0	14	100	0	56	14	21	28	35	1.92
11505318--11505360	6	7.3	6	78	5	52	60	0	20	18	1.36
11505315--11505360	17	2.6	17	83	10	58	58	0	21	19	1.39
11505624--11505745	55	2.2	55	89	0	181	30	8	13	47	1.72
11508387--11508412	6	4.3	6	100	0	52	50	0	0	50	1.00
11508875--11508912	20	1.9	20	94	0	67	36	28	0	34	1.58
11512823--11512855	6	5.5	6	100	0	66	0	63	0	36	0.95
11521398--11521621	109	2.1	109	99	0	439	39	16	9	34	1.81
11522607--11522650	22	2.0	22	95	0	79	52	2	9	36	1.46
11524277--11524337	22	2.8	22	77	7	70	31	22	14	31	1.94
11532221--11532441	24	9.2	24	85	0	244	32	19	22	26	1.97
11532221--11532441	72	3.1	72	87	0	298	32	19	22	26	1.97
11534010--11534152	54	2.6	54	95	0	259	26	16	23	34	1.95
11538376--11538430	27	2.0	27	85	0	74	23	20	29	27	1.99
11538725--11538780	22	2.5	22	97	2	103	33	0	0	66	0.92
11542069--11542108	12	3.3	12	89	0	53	2	30	25	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11542563--11542659	43	2.3	43	85	0	122	43	11	12	32	1.78
11545068--11545115	21	2.2	22	85	3	62	47	2	25	25	1.62
11545486--11545542	23	2.6	22	73	15	55	70	8	0	21	1.14
11545696--11545728	16	2.0	17	88	5	50	27	21	0	51	1.48
11547097--11547199	11	9.0	11	71	12	73	42	0	0	55	1.13
11547096--11547199	6	18.0	6	73	18	87	42	0	0	55	1.12
11547096--11547215	17	7.3	17	81	11	124	44	0	1	53	1.16
11547920--11547958	13	3.1	13	92	3	62	48	2	7	41	1.45
11548236--11548279	20	2.3	19	88	4	61	79	2	15	2	0.93
11548298--11548327	11	2.7	11	89	0	51	10	23	56	10	1.62
11548980--11549070	29	3.1	29	82	7	96	39	25	5	29	1.78
11549038--11549404	58	6.3	58	91	1	576	33	29	1	35	1.68
11551320--11551347	13	2.2	13	100	0	56	50	0	35	14	1.43
11552690--11552719	15	2.0	15	93	0	51	40	6	10	43	1.64
11557733--11557781	2	24.5	2	100	0	98	51	0	48	0	1.00
11567283--11567313	16	1.9	16	93	0	53	35	35	0	29	1.58
11570887--11570934	22	2.2	22	100	0	96	37	8	4	50	1.52
11570903--11570950	24	2.0	24	83	0	60	39	8	6	45	1.59
11570935--11571071	66	2.1	66	82	7	167	48	5	11	34	1.62
11572080--11572749	39	17.0	39	80	3	653	24	15	29	31	1.95
11572080--11572746	79	8.5	79	84	2	705	24	15	29	31	1.95
11572848--11573022	49	3.5	49	74	8	158	20	33	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11572835--11573204	99	3.7	97	81	5	397	19	31	16	32	1.94
11572835--11573264	199	2.2	198	79	6	467	18	31	16	32	1.94
11572841--11573271	50	8.7	50	75	7	315	18	32	16	32	1.94
11582403--11582439	14	2.6	14	100	0	74	21	29	13	35	1.92
11590088--11590133	24	1.9	23	86	8	65	56	6	4	32	1.45
11590084--11590142	25	2.3	26	75	18	63	52	11	3	32	1.54
11596314--11596356	21	2.0	21	86	8	61	37	4	4	53	1.43
11596334--11596469	47	2.8	48	78	10	150	41	4	2	50	1.37
11599850--11599911	29	2.1	29	81	0	70	38	6	19	35	1.77
11599857--11599919	29	2.2	29	82	5	74	38	4	23	33	1.76
11603535--11603594	30	1.9	32	90	6	97	31	1	13	53	1.50
11603653--11603731	38	2.1	38	92	0	131	40	3	2	53	1.33
11604245--11604310	13	5.0	13	78	9	62	31	6	22	39	1.79
11616911--11616955	7	6.3	7	82	12	56	66	15	15	2	1.35
11623346--11623546	101	2.0	101	98	0	386	58	7	14	18	1.60
11628230--11628259	6	5.0	6	100	0	60	33	33	0	33	1.58
11636996--11637025	15	2.0	15	93	0	51	70	0	30	0	0.88
11638085--11638135	12	4.5	11	81	13	59	76	0	21	1	0.88
11643759--11643803	18	2.5	18	89	7	65	15	20	24	40	1.91
11647812--11647989	37	4.8	37	80	3	171	29	28	17	24	1.97
11647812--11647969	74	2.1	74	84	2	199	29	27	17	25	1.97
11648443--11648517	37	2.0	37	100	0	150	21	13	10	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11653823--11653853	15	2.1	15	94	5	55	25	0	3	70	1.02
11655206--11655243	17	2.2	17	86	9	51	23	10	10	55	1.65
11656998--11657023	3	8.7	3	100	0	52	34	65	0	0	0.93
11661668--11661938	35	7.7	35	89	0	373	21	16	27	33	1.95
11661660--11661932	105	2.6	105	89	0	411	22	15	27	34	1.95
11664172--11664468	35	8.5	35	85	3	357	24	14	26	34	1.94
11664171--11664468	105	2.8	104	86	4	409	24	14	26	34	1.94
11664171--11664449	70	4.0	70	87	1	398	22	15	27	35	1.94
11666684--11666980	35	8.5	35	85	3	357	24	14	26	34	1.94
11666683--11666980	105	2.8	104	86	4	409	24	14	26	34	1.94
11666683--11666961	70	4.0	70	87	1	398	22	15	27	35	1.94
11669193--11669491	35	8.5	35	87	0	382	24	14	27	33	1.94
11671705--11672003	35	8.5	35	87	0	382	24	14	27	33	1.94
11674122--11674420	35	8.5	35	89	0	420	22	16	27	33	1.95
11676621--11676670	21	2.4	21	96	0	91	18	38	26	18	1.93
11680523--11680806	149	1.9	152	82	7	357	21	11	17	50	1.77
11683452--11683488	19	1.9	19	94	0	65	48	0	5	45	1.25
11687142--11687183	21	2.0	21	100	0	84	38	23	14	23	1.92
11687517--11687689	37	4.7	37	86	2	224	28	30	17	23	1.97
11687676--11687761	34	2.4	36	77	11	88	30	20	16	32	1.95
11687751--11687804	26	2.1	26	89	0	81	29	22	22	25	1.99
11691615--11691663	18	2.8	17	77	22	57	53	16	18	12	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11701390--11701435	21	2.2	20	85	11	58	39	23	4	32	1.75
11701938--11702011	36	2.1	36	92	0	121	44	12	16	27	1.82
11703094--11703216	45	2.7	45	82	0	147	20	25	13	41	1.88
11722026--11722060	4	8.8	4	87	0	52	22	25	0	51	1.48
11722027--11722067	12	3.4	12	82	0	55	21	26	2	48	1.63
11726157--11726184	3	9.3	3	100	0	56	64	0	35	0	0.94
11726614--11726666	17	3.1	17	77	0	52	16	11	13	58	1.63
11741918--11742247	43	7.7	43	84	3	412	35	10	22	32	1.87
11741911--11742247	86	3.9	86	88	1	469	35	9	22	32	1.87
11742984--11743031	16	2.8	17	84	6	62	2	20	2	75	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125