genome.fa.s6.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  61  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18679677--18679706	16	1.9	16	93	6	53	50	0	6	43	1.28
18683760--18684309	216	2.6	212	83	6	679	40	11	18	30	1.85
18683760--18684342	208	2.7	213	82	4	698	41	11	17	30	1.84
18690938--18691698	216	3.5	215	81	5	809	39	14	16	29	1.88
18692574--18692626	25	2.2	24	80	16	65	54	9	3	32	1.50
18693517--18693553	19	1.9	19	88	0	56	2	16	0	81	0.81
18693534--18693580	11	3.8	12	79	17	51	12	14	0	72	1.13
18693534--18693578	15	3.5	13	88	11	58	13	13	0	73	1.10
18694516--18694686	7	25.4	7	87	10	204	73	0	14	11	1.13
18694521--18694671	69	2.2	69	88	9	218	72	0	15	11	1.15
18694516--18694654	6	21.7	6	90	5	152	72	0	15	11	1.16
18694516--18694693	12	13.9	12	78	17	116	73	0	13	12	1.13
18694615--18694686	25	3.1	23	75	14	51	75	1	11	12	1.12
18706981--18707888	303	3.0	303	93	0	1537	33	21	12	32	1.90
18708715--18708739	12	2.1	12	100	0	50	20	16	0	64	1.30
18710451--18711199	217	3.5	215	83	5	892	40	15	15	28	1.88
18714220--18714317	6	16.3	6	78	12	71	75	0	8	16	1.03
18714242--18714307	7	9.3	7	82	14	82	74	0	12	13	1.08
18714247--18714313	24	2.7	24	88	9	91	76	0	10	13	1.03
18714225--18714317	31	3.0	31	87	7	120	75	0	8	16	1.04
18717167--18717214	6	7.8	6	81	4	60	77	0	4	18	0.93
18717167--18717213	13	3.8	12	89	10	69	76	0	4	19	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18718283--18718327	23	1.9	24	86	13	67	55	6	4	33	1.46
18718619--18726012	216	34.7	215	76	7	6036	40	13	18	28	1.88
18718619--18726012	430	17.3	430	77	7	5772	40	13	18	28	1.88
18720706--18720744	21	2.0	20	85	10	53	46	15	10	28	1.78
18718618--18726012	861	8.7	859	79	6	6852	40	13	18	28	1.88
18744909--18744948	20	2.0	21	85	5	55	80	0	12	7	0.91
18749000--18749029	15	1.9	16	93	6	53	23	6	26	43	1.78
18753089--18753135	22	2.1	22	88	7	69	21	12	27	38	1.90
18759376--18759418	19	2.3	19	87	0	59	55	0	2	41	1.12
18761176--18762087	300	3.0	300	90	3	1445	32	13	21	33	1.91
18773647--18773867	111	2.0	111	93	1	381	29	16	16	37	1.91
18779766--18780519	216	3.5	215	85	3	971	39	14	17	28	1.89
18781513--18781558	24	1.9	23	86	8	65	56	6	4	32	1.45
18789450--18789503	21	2.6	21	77	16	67	25	9	27	37	1.87
18789476--18789571	42	2.3	42	90	0	156	27	15	23	33	1.95
18793638--18793670	17	1.9	17	93	0	57	6	15	9	69	1.34
18803895--18804068	77	2.3	77	79	1	188	33	20	20	26	1.97
18806002--18806032	16	1.9	16	100	0	62	19	3	6	70	1.22
18808199--18808598	42	9.5	42	86	1	550	22	17	23	36	1.95
18809357--18809405	22	2.2	22	82	7	64	53	0	6	40	1.26
18809367--18809579	114	1.9	111	90	4	338	45	2	8	43	1.48
18810180--18810232	21	2.5	21	82	17	65	18	11	0	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18810791--18810819	3	9.7	3	100	0	58	68	0	0	31	0.89
18822612--18823525	304	3.0	303	94	0	1621	32	12	21	33	1.91
18843073--18843113	21	2.0	21	85	0	55	14	9	0	75	1.04
18844061--18844101	10	3.8	10	90	9	55	78	0	17	4	0.93
18844901--18844933	3	11.0	3	100	0	66	33	0	0	66	0.92
18844999--18845044	25	1.9	23	86	8	65	32	2	8	56	1.42
18846047--18846800	216	3.5	216	84	4	905	28	16	14	39	1.89
18853396--18853983	216	2.8	214	82	7	725	29	17	12	40	1.87
18853978--18854009	16	2.0	16	93	0	55	40	21	18	18	1.91
18855249--18855311	31	2.0	32	81	9	76	23	9	22	44	1.82
18864382--18864466	6	13.3	6	87	7	89	16	7	0	76	0.99
18864392--18864439	7	7.3	7	95	4	75	14	12	0	72	1.11
18864432--18864469	5	7.4	5	88	11	51	18	0	0	81	0.69
18864382--18864471	14	6.9	13	80	14	71	17	6	0	75	1.01
18865427--18865461	18	2.0	17	88	5	52	80	0	17	2	0.84
18866489--18866534	25	1.9	25	86	8	69	32	4	6	56	1.45
18867500--18868247	215	3.5	215	83	5	858	29	15	14	40	1.87
18870833--18871741	302	3.0	303	94	0	1590	32	12	21	34	1.90
18875242--18875326	30	2.9	29	79	10	84	38	3	23	34	1.72
18875288--18875633	29	11.9	29	77	10	201	34	2	25	36	1.71
18875422--18875642	30	7.6	29	79	7	207	36	3	24	35	1.72
18875303--18875641	145	2.3	143	77	11	307	34	2	25	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18877825--18878193	50	7.4	49	78	5	368	13	34	18	33	1.90
18877825--18878195	99	3.7	99	84	4	464	13	33	18	33	1.90
18878902--18878982	40	2.0	42	90	4	130	16	22	14	46	1.83
18886770--18887164	29	13.5	29	76	9	243	35	3	25	35	1.72
18886770--18887164	59	6.8	58	76	9	252	35	3	25	35	1.72
18888837--18888895	17	3.8	16	75	22	63	57	3	0	38	1.15
18888855--18888887	12	2.8	12	95	4	59	63	0	0	36	0.95
18896367--18896409	22	2.0	21	86	9	59	51	2	16	30	1.57
18898085--18898114	15	1.9	16	93	6	53	43	6	0	50	1.28
18899132--18899199	9	7.3	9	72	11	57	32	4	1	61	1.24
18899121--18899165	19	2.4	19	88	7	65	28	2	4	64	1.25
18899132--18899199	29	2.4	27	78	9	75	32	4	1	61	1.24
18899207--18899259	19	2.8	19	82	2	63	41	1	0	56	1.10
18902558--18902637	33	2.4	33	89	0	124	31	18	18	31	1.95
18917016--18917080	15	4.3	15	76	7	60	26	21	26	26	2.00
18926843--18926881	4	9.8	4	88	0	60	25	28	0	46	1.53
18928832--18928880	18	2.7	18	81	12	64	79	2	16	2	0.92
18929856--18930354	42	11.9	42	86	3	623	22	18	24	34	1.96
18929856--18930354	126	4.0	126	86	1	696	22	18	24	34	1.96
18930800--18930833	3	11.3	3	87	0	50	38	2	0	58	1.13
18931235--18931402	50	3.4	50	71	12	164	42	4	7	45	1.52
18931192--18931402	100	2.1	101	90	1	343	43	4	7	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18931287--18931584	157	1.9	155	86	4	431	44	3	9	42	1.53
18932131--18932189	10	5.6	10	73	11	55	20	6	1	71	1.18
18934628--18934672	19	2.4	19	88	7	65	28	2	4	64	1.25
18934664--18934728	18	3.5	18	76	14	60	41	6	0	52	1.26
18934696--18934739	20	2.2	20	92	4	72	47	0	0	52	1.00
18939459--18939562	36	2.9	36	95	0	181	34	16	27	21	1.94
18940192--18940240	21	2.3	22	79	6	57	22	18	20	38	1.93
18942905--18942930	3	8.7	3	100	0	52	0	65	0	34	0.93
18943095--18943134	20	2.0	20	95	0	71	22	10	15	52	1.71
18961588--18961624	18	2.1	18	89	0	56	13	18	5	62	1.50
18961728--18961768	16	2.4	18	80	15	52	9	19	4	65	1.40
18962420--18966970	431	10.6	432	82	5	5151	40	14	17	27	1.88
18962769--18964798	215	9.4	215	84	2	2421	41	14	16	27	1.88
18964811--18966970	216	10.0	216	84	2	2530	40	13	17	28	1.87
18969084--18971907	216	13.3	215	83	5	3349	40	14	17	27	1.88
18969090--18971890	842	3.3	842	88	3	3890	40	14	17	27	1.88
18970543--18971890	433	3.1	430	87	2	1862	40	14	17	28	1.88
18979518--18979556	13	2.9	13	84	3	51	17	5	5	71	1.23
18989232--18989273	20	2.3	18	88	12	59	9	9	4	76	1.15
19003017--19005990	216	13.9	215	80	6	3036	28	17	14	39	1.89
19002874--19006803	632	6.2	635	79	8	3781	28	17	14	40	1.88
19005795--19006803	201	4.9	203	79	7	983	28	17	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19004090--19006905	216	13.3	215	76	9	2374	28	17	14	40	1.88
19008277--19008769	215	2.3	212	81	6	555	28	16	14	40	1.88
19008796--19008933	50	2.7	50	81	9	154	36	12	15	35	1.86
19009125--19009157	17	1.9	17	88	11	50	66	6	0	27	1.15
19009565--19009912	175	2.0	175	85	1	473	29	19	12	38	1.89
19009740--19012219	215	11.8	215	78	8	2411	28	17	14	39	1.88
19009740--19015592	416	14.1	416	79	9	5362	28	17	14	39	1.89
19009900--19015500	216	27.0	201	74	12	3948	28	17	14	39	1.89
19011811--19014443	193	13.0	196	72	14	1393	27	17	14	39	1.89
19012214--19015586	618	5.4	617	77	11	3043	28	17	14	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125