genome.fa.s6.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  43  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13260037--13260104	21	3.2	21	91	2	109	44	33	0	22	1.53
13260088--13260117	15	2.0	15	93	0	51	43	33	3	20	1.68
13260154--13260201	10	4.7	10	78	2	51	16	25	31	27	1.97
13260183--13260222	21	1.9	21	84	0	53	15	22	32	30	1.94
13260209--13260250	20	2.1	20	100	0	84	14	19	23	42	1.87
13265877--13265951	11	6.5	11	76	8	69	4	25	0	70	1.04
13265879--13265943	12	5.5	12	76	10	62	4	23	0	72	1.03
13266321--13266388	21	3.2	21	87	2	100	44	32	0	23	1.54
13266372--13266401	15	2.0	15	93	0	51	43	33	3	20	1.68
13266438--13266485	10	4.7	10	78	2	51	16	25	31	27	1.97
13266467--13266506	21	1.9	21	84	0	53	15	22	32	30	1.94
13266493--13266534	20	2.1	20	100	0	84	14	19	23	42	1.87
13286618--13286835	112	1.9	112	91	3	359	33	16	27	22	1.96
13290318--13290362	17	2.8	16	81	18	58	0	22	0	77	0.76
13290318--13290363	10	4.3	11	86	8	60	0	21	0	78	0.76
13293307--13293350	20	2.2	20	88	8	63	70	2	13	13	1.26
13293306--13293342	14	2.7	14	88	12	51	70	2	13	13	1.28
13300822--13300855	17	2.1	17	88	5	52	47	14	2	35	1.60
13303442--13303704	141	1.9	140	88	0	400	26	20	21	31	1.98
13303567--13303829	126	2.1	127	90	1	413	26	20	21	30	1.98
13303816--13304047	38	6.3	37	81	5	274	27	25	14	33	1.94
13303816--13304047	74	3.2	73	84	4	288	27	25	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13303816--13304047	112	2.1	109	84	4	295	27	25	14	33	1.94
13304768--13304852	43	2.0	43	83	4	109	45	31	1	21	1.59
13311697--13311749	21	2.5	20	79	11	54	37	24	11	26	1.89
13317511--13317793	140	2.0	141	97	0	541	38	8	30	23	1.84
13321201--13321253	26	2.1	25	82	6	63	26	7	22	43	1.80
13321417--13321792	38	10.1	36	75	8	258	26	20	15	37	1.92
13321417--13321801	76	5.2	72	78	7	326	26	21	15	37	1.92
13325133--13325174	21	2.0	21	85	0	57	19	26	19	35	1.95
13325161--13325190	12	2.5	12	94	0	51	13	23	20	43	1.86
13334365--13334888	151	3.5	142	80	10	482	44	10	3	42	1.54
13334453--13334888	151	2.9	149	83	5	502	44	10	3	42	1.54
13334453--13334887	149	2.9	146	84	5	512	44	10	3	42	1.54
13334770--13334821	24	2.2	24	82	6	61	44	5	0	50	1.26
13349645--13349720	40	1.9	40	83	0	98	27	17	27	27	1.97
13357998--13358033	16	2.2	16	90	0	54	58	13	2	25	1.49
13361429--13361458	7	4.4	7	95	4	53	63	13	10	13	1.52
13363578--13363625	24	2.0	23	84	12	60	56	10	6	27	1.57
13364419--13364454	17	2.1	17	100	0	72	55	5	16	22	1.62
13365490--13365713	26	8.5	26	85	3	279	34	19	25	19	1.96
13365490--13365713	106	2.1	104	87	3	315	34	19	25	19	1.96
13367470--13367503	17	2.1	17	88	5	52	35	0	14	50	1.44
13367588--13367627	21	1.9	21	84	0	53	22	17	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13369118--13369164	24	2.0	24	83	8	60	34	19	4	42	1.70
13373588--13373641	14	3.9	14	83	9	58	77	3	1	16	1.00
13379706--13379785	39	2.0	39	80	2	88	25	12	36	26	1.91
13380302--13380368	15	4.5	15	73	14	57	52	8	32	5	1.57
13392931--13393009	35	2.3	35	82	8	99	34	17	25	22	1.96
13395037--13395219	36	5.1	36	90	1	278	28	8	23	39	1.84
13395612--13395658	23	2.0	23	100	0	94	34	4	17	44	1.68
13395621--13395675	23	2.4	23	87	0	74	34	5	20	40	1.75
13411081--13411141	29	2.1	29	93	0	104	37	13	24	24	1.91
13416454--13416501	20	2.4	21	82	10	64	29	10	31	29	1.90
13416467--13416508	20	2.1	20	86	0	57	26	7	33	33	1.83
13416709--13416761	20	2.7	20	90	0	79	26	9	33	30	1.88
13426134--13426234	41	2.5	41	91	3	159	24	20	13	40	1.89
13429362--13429413	23	2.2	24	83	10	63	3	5	25	65	1.32
13429361--13429413	24	2.2	25	77	16	58	3	5	24	66	1.31
13432227--13432324	49	2.0	49	89	0	151	50	11	7	31	1.65
13434317--13434548	91	2.6	90	84	3	261	38	18	9	32	1.84
13434648--13434724	10	7.9	10	71	8	52	35	0	0	64	0.93
13435041--13435099	29	2.0	30	90	3	93	30	6	20	42	1.78
13435044--13435107	30	2.2	29	85	2	83	32	9	15	42	1.79
13435242--13435325	31	2.8	31	81	3	91	41	14	9	34	1.78
13435443--13435477	18	2.0	18	88	5	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13439034--13439076	18	2.4	18	80	7	52	51	0	2	46	1.13
13441219--13441253	12	2.9	12	91	0	52	2	11	0	85	0.69
13441945--13442037	48	1.9	48	93	0	159	25	18	19	36	1.94
13447820--13447861	21	2.0	21	100	0	84	71	4	9	14	1.28
13450252--13450295	20	2.3	19	88	11	63	77	0	6	15	0.97
13455908--13455950	21	2.0	21	90	4	68	72	2	9	16	1.21
13456758--13456800	19	2.3	19	84	8	52	58	4	0	37	1.19
13457083--13457125	19	2.3	19	84	8	52	58	4	0	37	1.19
13456665--13457304	325	2.0	325	96	0	1183	44	16	4	34	1.67
13458390--13458657	43	6.3	43	85	3	364	27	27	20	24	1.99
13458390--13458657	128	2.1	128	87	4	389	27	27	20	24	1.99
13462688--13463010	41	7.9	41	87	3	454	16	31	21	31	1.95
13462790--13462904	24	5.4	24	64	26	87	15	32	24	27	1.95
13467414--13467691	137	2.0	137	97	0	520	37	18	19	25	1.94
13470790--13470834	23	1.9	24	86	4	65	33	8	2	55	1.43
13476027--13476051	13	1.9	13	100	0	50	48	12	16	24	1.79
13485510--13485747	51	4.6	51	88	3	318	29	22	15	32	1.95
13492775--13493003	51	4.5	51	88	2	307	28	22	15	33	1.94
13496142--13496190	25	2.0	25	91	0	80	20	8	40	30	1.81
13502425--13502464	15	2.4	18	88	12	59	27	22	12	37	1.90
13513501--13513553	23	2.3	23	96	0	97	30	9	24	35	1.87
13515771--13515795	7	3.6	7	100	0	50	12	0	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13516609--13516779	36	4.8	36	87	2	263	29	12	23	35	1.91
13517024--13517161	66	2.1	68	84	2	181	18	12	26	42	1.86
13517238--13517302	23	2.8	23	95	2	112	33	4	15	46	1.66
13517290--13517324	10	3.5	10	88	0	52	45	2	14	37	1.59
13517298--13517427	59	2.2	59	87	0	179	37	4	17	40	1.71
13535276--13535307	14	2.3	14	94	0	55	28	9	6	56	1.55
13536861--13536900	19	2.1	19	86	9	55	80	0	2	17	0.83
13536864--13536888	13	1.9	13	100	0	50	80	0	4	16	0.87
13537941--13537994	18	3.1	18	81	2	65	18	22	35	24	1.96
13547924--13547997	36	2.1	36	97	0	139	41	20	18	18	1.90
13553245--13553791	182	3.0	178	87	6	758	28	6	20	44	1.76
13554667--13555126	157	2.9	158	85	2	638	31	14	16	36	1.89
13556339--13556584	57	4.3	57	82	5	300	29	49	2	18	1.60
13556371--13556417	24	2.0	23	83	4	58	31	48	2	17	1.58
13556408--13556474	24	2.8	24	83	0	71	28	53	1	16	1.52
13556429--13556506	33	2.4	33	80	4	86	29	53	0	16	1.43
13556566--13556633	24	2.8	24	68	0	64	25	52	2	19	1.59
13556567--13556680	48	2.4	48	86	2	149	27	49	2	21	1.63
13557427--13557520	15	6.3	15	70	14	61	59	22	2	15	1.47
13557428--13557520	30	3.1	30	82	0	105	60	21	2	16	1.46
13568853--13568877	11	2.3	11	100	0	50	44	0	0	56	0.99
13568884--13568931	21	2.2	23	88	7	73	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13568874--13568931	21	2.5	23	81	16	66	48	1	0	50	1.11
13568886--13568937	23	2.5	19	80	17	59	46	0	0	53	1.00
13569608--13569668	32	1.9	32	82	0	77	32	3	29	34	1.74
13583913--13583967	24	2.3	24	84	6	67	0	41	0	58	0.98
13583913--13583967	12	4.6	12	76	14	51	0	41	0	58	0.98
13590108--13590150	18	2.4	18	88	0	59	25	18	25	30	1.98
13593279--13593305	14	1.9	14	100	0	54	74	0	3	22	0.98
13594832--13594874	22	2.0	22	86	9	61	25	4	4	65	1.32
13595701--13595848	30	5.0	29	73	11	122	37	4	21	36	1.73
13595701--13595850	60	2.5	58	75	11	142	38	4	21	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125