genome.fa.s6.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  11  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3672168--3672447	30	9.6	28	70	26	110	32	4	31	32	1.77
3672163--3672476	57	5.4	58	89	7	437	31	4	30	33	1.77
3672231--3672475	29	8.5	28	71	21	170	31	3	31	33	1.75
3673564--3673597	3	11.3	3	93	0	59	35	2	0	61	1.11
3673573--3673606	15	2.3	15	89	0	50	35	5	2	55	1.39
3674296--3674322	14	1.9	14	100	0	54	51	0	11	37	1.37
3674281--3674339	31	1.9	31	92	0	100	54	1	5	38	1.33
3674280--3674356	6	12.8	6	72	15	61	54	1	3	40	1.27
3674281--3674356	17	4.6	17	82	11	86	55	1	3	39	1.27
3674318--3674357	11	4.0	11	75	24	52	60	0	0	40	0.97
3680475--3680530	15	3.9	14	75	15	60	42	8	0	48	1.34
3683194--3683405	107	2.0	107	85	2	284	40	9	7	42	1.64
3694073--3694133	24	2.6	23	74	20	63	62	1	1	34	1.15
3694260--3694290	12	2.7	12	95	5	55	61	0	22	16	1.34
3694637--3694705	26	2.7	25	77	6	68	59	2	0	37	1.12
3694661--3694730	36	2.0	36	85	2	97	58	4	0	37	1.18
3695175--3695228	23	2.3	23	84	6	74	29	11	22	37	1.89
3695427--3695468	3	14.3	3	95	5	77	30	0	0	69	0.89
3720226--3720298	30	2.4	29	91	6	119	50	0	0	49	1.00
3720228--3720280	14	3.6	14	70	9	52	47	0	0	52	1.00
3720244--3720335	39	2.4	39	89	5	143	54	0	0	45	0.99
3720261--3720330	20	3.5	20	73	26	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3726420--3726535	31	3.8	31	73	15	107	25	17	9	47	1.77
3726803--3726947	59	2.5	59	83	2	193	47	13	13	25	1.79
3726844--3726947	31	3.5	31	70	12	90	46	12	13	27	1.79
3728009--3728034	13	2.0	13	100	0	52	38	23	7	30	1.83
3733319--3733359	22	1.9	21	85	5	55	68	2	2	26	1.15
3735129--3735282	83	1.9	83	100	0	308	27	18	28	25	1.98
3735255--3735308	26	2.1	26	100	0	108	31	16	22	29	1.96
3735172--3735391	109	2.0	109	99	0	431	27	19	26	26	1.99
3738500--3738618	42	3.0	39	92	7	211	12	36	4	47	1.61
3739981--3740064	27	3.5	22	68	23	53	46	5	1	46	1.35
3755581--3755619	14	2.8	13	81	11	51	61	5	7	25	1.44
3755577--3755649	11	6.6	11	74	0	65	67	4	5	23	1.29
3755600--3755657	22	2.6	21	84	10	71	67	5	6	20	1.34
3755619--3755666	22	2.2	22	81	7	53	70	8	8	12	1.32
3757716--3757745	15	1.9	16	93	6	53	43	13	10	33	1.77
3759392--3759427	16	2.2	16	100	0	72	38	19	27	13	1.90
3761541--3761592	18	2.8	18	77	14	52	32	1	0	65	1.04
3762153--3762347	96	2.0	96	81	7	227	47	11	10	31	1.73
3764063--3764474	92	4.5	91	75	12	280	26	12	13	47	1.79
3776832--3776953	60	2.0	60	96	0	226	47	9	3	39	1.53
3788419--3788559	69	2.0	70	83	4	176	42	4	15	37	1.67
3788686--3788724	11	3.4	11	86	10	51	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3791335--3791409	30	2.4	30	82	4	87	26	6	8	58	1.51
3793975--3794034	31	2.0	31	90	3	95	35	6	10	48	1.63
3800684--3800736	27	2.0	27	85	7	72	35	1	13	49	1.53
3809192--3809244	23	2.3	23	80	3	72	43	1	1	52	1.23
3810112--3810136	3	8.3	3	100	0	50	0	36	0	64	0.94
3820758--3820789	8	4.0	8	95	0	55	37	3	12	46	1.57
3823002--3823039	20	1.9	20	89	10	60	55	15	10	18	1.68
3823519--3823550	2	16.0	2	100	0	64	50	0	0	50	1.00
3823945--3823971	8	3.4	8	100	0	54	51	25	0	22	1.48
3824163--3824222	25	2.7	21	72	18	57	48	5	15	31	1.66
3826202--3826277	35	2.2	35	92	0	125	59	5	17	18	1.56
3826656--3826707	22	2.4	22	81	9	63	65	0	0	34	0.93
3830985--3831013	3	9.7	3	100	0	58	34	0	0	65	0.93
3841788--3841822	17	2.1	17	94	5	63	22	17	20	40	1.92
3842338--3842383	21	2.1	21	84	8	56	41	8	4	45	1.55
3843596--3843620	12	2.1	12	100	0	50	32	36	16	16	1.90
3844620--3844669	26	2.0	26	84	4	66	44	6	2	48	1.39
3847037--3847134	22	4.5	22	67	10	65	45	18	21	14	1.84
3848527--3848568	7	5.9	7	91	5	66	66	0	0	33	0.92
3872934--3872968	18	1.9	18	94	0	61	62	11	5	20	1.48
3874971--3875011	21	2.0	21	85	0	55	34	12	17	36	1.87
3876933--3876961	15	1.9	15	100	0	58	48	0	13	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3881010--3881042	14	2.5	13	86	13	50	39	0	0	60	0.97
3881764--3881846	39	2.1	39	82	4	96	25	22	26	25	2.00
3881918--3882831	76	12.0	76	90	3	1390	33	17	15	33	1.91
3881919--3882999	152	7.0	152	89	4	1608	34	17	14	33	1.91
3882751--3882919	91	1.9	89	91	2	275	33	18	13	34	1.90
3882877--3882995	38	3.1	39	76	13	140	36	15	14	32	1.88
3882675--3883080	167	2.4	167	95	0	726	33	18	13	34	1.90
3882843--3882995	76	2.0	77	93	2	263	35	16	13	33	1.89
3883259--3883379	51	2.4	50	84	2	145	13	23	21	42	1.88
3883391--3883594	50	4.1	50	66	20	122	14	21	22	42	1.88
3883358--3883652	150	2.0	150	95	0	527	14	20	22	42	1.89
3891955--3891987	14	2.5	13	86	13	50	39	0	0	60	0.97
3897204--3897244	18	2.3	18	87	8	57	24	2	31	41	1.68
3897308--3897428	60	2.0	60	100	0	242	41	14	19	24	1.89
3908123--3908147	12	2.1	12	100	0	50	68	0	24	8	1.16
3913097--3913137	2	21.0	2	95	5	75	48	0	0	51	1.00
3913657--3913759	37	2.7	38	78	4	109	32	25	19	23	1.98
3914597--3914633	2	18.5	2	100	0	74	48	0	0	51	1.00
3920102--3920148	2	24.0	2	95	4	87	48	0	0	51	1.00
3921272--3921321	23	2.2	23	82	7	57	42	0	2	56	1.11
3923086--3923128	21	2.0	21	86	8	61	34	4	0	60	1.17
3929055--3929116	28	2.2	29	77	16	67	22	9	32	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3929094--3929401	58	5.3	58	80	7	331	35	2	28	33	1.70
3929242--3929401	29	5.6	29	70	21	88	35	0	28	35	1.62
3929242--3929401	28	5.5	28	72	16	114	35	0	28	35	1.62
3929094--3929398	115	2.6	114	82	6	339	35	2	28	33	1.70
3929709--3929778	32	2.2	33	84	7	90	60	10	11	18	1.58
3931364--3931425	17	3.6	17	80	8	72	51	3	1	43	1.27
3931349--3931427	34	2.3	35	75	14	83	50	2	1	45	1.23
3931371--3931435	17	3.8	17	79	4	60	55	4	0	40	1.21
3931364--3931436	34	2.1	34	82	5	85	53	4	1	41	1.28
3934556--3934582	14	1.9	14	100	0	54	62	0	0	37	0.95
3948442--3948477	2	18.0	2	94	0	63	50	2	47	0	1.15
3953487--3953525	18	2.2	18	85	0	51	28	20	10	41	1.85
3962218--3962273	21	2.4	24	80	19	66	64	1	3	30	1.21
3962241--3962298	17	3.4	16	81	15	64	63	1	1	32	1.14
3962505--3962582	19	4.2	18	76	15	63	33	0	2	64	1.08
3962505--3962582	20	4.2	19	76	18	76	33	0	2	64	1.08
3962505--3962582	8	8.4	9	70	20	54	33	0	2	64	1.08
3962527--3962593	20	3.4	20	73	19	61	34	0	1	64	1.03
3969456--3969494	20	1.9	21	89	5	62	41	0	2	56	1.13
3969626--3969658	16	2.1	16	88	5	50	42	0	6	51	1.26
3978167--3978233	23	2.9	23	86	0	98	44	8	7	38	1.64
3981540--3981924	29	13.2	28	77	11	253	35	24	1	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3981559--3981900	58	5.8	58	80	8	302	35	24	1	38	1.63
3981966--3982377	30	14.2	30	73	13	213	36	2	25	35	1.68
3981990--3982400	59	7.1	56	74	14	241	35	2	26	35	1.71
3981965--3982335	59	6.4	58	80	10	250	36	2	25	36	1.68
3982323--3982385	30	2.1	29	94	2	108	38	1	20	39	1.62
3984093--3984160	6	11.8	6	77	17	65	51	0	1	47	1.09
3984095--3984149	28	2.0	26	89	6	83	52	0	1	45	1.11
3984093--3984156	17	3.9	16	82	14	69	51	0	1	46	1.10
3984203--3984227	2	12.5	2	100	0	50	52	0	0	48	1.00
3984351--3984426	32	2.4	31	79	14	84	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125