genome.fa.s79.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  10  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395351--1395497	21	7.0	21	73	8	75	36	6	8	48	1.61
1395426--1395497	22	3.3	22	72	1	74	38	5	5	50	1.49
1395795--1395948	22	7.0	22	78	4	78	39	9	5	46	1.58
1395795--1396194	44	8.9	43	71	12	137	38	9	5	46	1.60
1395853--1396125	11	25.2	11	64	5	72	39	9	5	45	1.58
1395826--1395985	22	7.3	22	78	2	135	40	9	5	45	1.58
1395856--1396175	66	4.7	66	70	12	204	39	9	5	45	1.59
1396062--1396191	22	5.9	22	75	8	86	36	9	4	49	1.56
1396063--1396192	66	2.0	66	80	8	149	36	10	4	49	1.57
1396157--1396194	19	2.0	19	85	10	51	31	10	5	52	1.58
1396266--1396563	22	13.3	22	70	13	126	37	8	6	47	1.59
1396257--1396518	90	2.9	88	75	10	224	37	8	6	48	1.58
1396898--1396960	22	2.9	22	88	4	83	34	7	11	46	1.69
1396987--1397094	44	2.5	42	80	4	108	44	9	1	44	1.46
1396978--1397248	22	12.5	22	68	14	73	39	10	3	46	1.56
1397087--1397220	64	2.1	66	85	2	182	36	9	5	47	1.61
1397277--1397368	22	4.2	22	81	0	103	38	10	5	45	1.62
1397247--1397382	44	3.1	44	78	6	116	38	10	6	44	1.65
1397290--1397397	44	2.5	44	81	3	119	34	11	7	47	1.67
1397499--1397567	22	3.2	20	77	6	66	39	8	1	50	1.42
1397603--1397662	27	2.3	27	88	5	88	38	11	1	48	1.50
1400514--1400546	17	1.9	17	93	0	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400817--1400849	16	2.0	17	88	5	50	57	3	0	39	1.14
1403936--1403966	2	15.5	2	93	0	53	48	0	3	48	1.17
1404275--1404309	5	7.0	5	87	12	54	77	0	0	22	0.78
1404487--1404854	134	2.8	134	95	1	641	39	8	10	41	1.70
1404488--1404895	134	3.0	133	88	3	437	41	9	9	39	1.70
1405005--1405045	11	3.7	11	86	0	55	65	12	7	14	1.45
1411037--1411069	15	2.2	15	94	0	57	39	0	0	60	0.97
1411707--1411966	84	3.1	84	97	0	484	39	15	7	38	1.75
1412308--1412402	20	4.7	20	73	10	77	52	1	2	44	1.19
1412369--1412467	18	5.4	18	74	20	82	44	0	2	53	1.12
1412384--1412478	15	5.7	15	78	18	82	44	0	2	53	1.12
1412384--1412546	31	5.1	30	72	18	109	47	0	2	49	1.19
1412377--1412462	37	2.4	36	88	5	120	44	0	2	53	1.13
1412408--1412460	14	4.3	13	75	17	51	39	0	1	58	1.09
1413393--1413453	32	2.0	30	87	6	86	47	0	0	52	1.00
1413497--1413563	28	2.4	27	80	11	73	49	4	4	41	1.43
1413506--1413565	28	2.1	29	87	3	86	46	5	5	43	1.47
1419969--1420008	3	13.3	3	100	0	80	67	0	0	32	0.91
1422613--1422670	30	1.9	30	86	6	82	41	6	3	48	1.47
1424073--1424149	30	2.6	30	83	4	102	40	3	5	50	1.43
1429659--1429698	10	4.0	10	81	12	55	47	0	0	52	1.00
1429653--1429695	20	2.2	20	95	0	77	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1429659--1429717	30	2.0	30	83	12	77	42	0	1	55	1.09
1446030--1446075	21	2.2	20	81	11	56	52	0	10	36	1.37
1450283--1450335	20	2.5	22	80	20	67	54	0	0	45	0.99
1450301--1450340	12	3.3	13	80	13	50	62	0	0	37	0.95
1451263--1451295	14	2.3	15	85	15	52	54	0	0	45	0.99
1452607--1452636	4	7.5	4	92	0	51	26	3	23	46	1.68
1452411--1453066	241	2.8	229	86	4	913	29	15	14	40	1.87
1457039--1457072	15	2.1	17	89	10	54	32	17	11	38	1.86
1458958--1458987	14	2.1	14	93	0	51	3	16	0	80	0.85
1466498--1466545	22	2.1	22	84	3	60	39	2	12	45	1.54
1468908--1468956	24	2.0	24	84	7	64	32	6	4	57	1.42
1475972--1476005	16	2.1	16	89	10	52	38	17	0	44	1.49
1485810--1485862	25	2.1	25	100	0	106	47	15	15	22	1.82
1491389--1491418	15	2.0	15	93	0	51	53	0	3	43	1.17
1491637--1491681	22	2.0	22	86	8	63	46	0	6	46	1.29
1491634--1491706	35	2.2	32	83	11	85	50	0	4	45	1.20
1492418--1492485	25	2.6	27	82	11	81	47	2	0	50	1.16
1492523--1492567	13	3.8	12	82	8	56	37	0	0	62	0.96
1492520--1492567	24	2.0	25	91	4	80	39	0	0	60	0.97
1493289--1493336	18	2.8	16	80	20	53	52	0	0	47	1.00
1494341--1494411	29	2.4	31	78	9	83	54	0	1	43	1.08
1501430--1501455	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1518537--1518573	9	4.2	9	83	16	51	35	0	0	64	0.94
1520035--1520111	32	2.5	31	82	6	93	54	1	2	41	1.22
1521071--1521095	2	12.5	2	100	0	50	0	52	0	48	1.00
1521270--1521300	2	16.0	2	93	6	55	48	0	0	51	1.00
1522712--1522754	17	2.5	17	80	0	59	86	4	4	4	0.80
1523215--1523257	15	2.8	15	85	3	59	74	0	20	4	1.00
1523527--1523570	15	2.9	15	100	0	88	45	13	0	40	1.44
1523613--1523646	15	2.2	16	89	5	52	82	2	2	11	0.89
1524218--1524334	22	5.2	22	69	11	67	36	20	17	24	1.94
1524576--1524754	65	2.7	65	83	3	153	34	18	11	35	1.87
1524635--1524814	33	5.5	31	76	10	146	35	20	11	33	1.88
1524576--1524754	33	5.5	33	73	10	127	34	18	11	35	1.87
1524608--1524754	65	2.2	66	87	3	208	34	17	11	36	1.86
1524571--1524814	33	7.4	32	72	14	119	35	20	11	33	1.88
1524849--1525054	103	2.0	103	98	0	394	33	13	16	35	1.88
1525006--1525117	31	3.4	32	77	10	111	31	16	16	36	1.90
1524969--1525123	65	2.4	63	82	5	177	32	13	17	36	1.89
1525034--1525130	33	3.0	33	78	6	108	32	14	18	34	1.91
1525263--1525377	36	3.2	34	75	16	99	13	17	18	51	1.76
1526927--1526980	17	3.2	17	79	7	58	68	3	3	24	1.22
1527092--1527132	12	3.2	13	86	10	57	60	0	0	39	0.96
1527092--1527133	15	2.9	15	89	3	59	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1527092--1527145	26	2.1	25	83	10	65	57	0	1	40	1.09
1527289--1527457	21	7.7	21	71	13	101	49	28	1	20	1.59
1527257--1527394	30	4.7	30	72	17	92	47	28	0	23	1.52
1527420--1527484	16	4.2	15	68	14	51	55	24	3	16	1.56
1531266--1531303	15	2.6	14	87	4	58	44	0	0	55	0.99
1534281--1534334	3	18.3	3	82	17	69	68	0	0	31	0.90
1534281--1534380	17	6.2	16	71	12	71	65	2	4	29	1.22
1535194--1535245	10	5.2	10	81	9	70	11	7	19	61	1.53
1536125--1536179	25	2.2	25	93	0	92	52	3	10	32	1.54
1536662--1536707	22	2.2	22	84	7	60	56	0	8	34	1.30
1542554--1542620	27	2.6	25	79	11	80	43	0	0	56	0.99
1562814--1562847	11	3.1	11	91	0	50	32	2	0	64	1.08
1562806--1562836	16	2.0	15	93	6	53	32	0	0	67	0.91
1563307--1563363	29	2.0	29	85	0	78	57	5	7	29	1.47
1564373--1564403	12	2.6	12	94	0	53	77	0	3	19	0.90
1570201--1570234	17	1.9	17	88	5	50	26	11	5	55	1.58
1576332--1576391	16	3.6	16	77	4	57	60	5	0	35	1.19
1577290--1577348	23	2.7	22	75	15	59	32	3	10	54	1.51
1577319--1577398	38	2.1	38	81	9	92	41	3	7	47	1.50
1577406--1577478	20	3.8	19	79	13	78	68	0	0	31	0.90
1577417--1577456	11	3.8	11	81	18	50	67	0	0	32	0.91
1578901--1578948	18	2.7	17	76	17	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1578911--1578955	20	2.2	21	80	11	58	51	0	0	48	1.00
1586149--1586178	13	2.4	13	94	5	53	46	6	0	46	1.29
1592169--1592272	8	13.8	8	88	9	141	73	0	13	13	1.11
1592158--1592271	7	15.7	7	86	13	144	73	0	13	13	1.09
1592158--1592272	15	7.9	15	91	8	161	73	0	13	13	1.09
1593287--1593821	41	13.0	40	87	8	670	23	18	21	36	1.95
1593287--1593821	81	6.5	81	88	6	692	23	18	21	36	1.95
1594047--1594095	16	2.7	19	78	15	59	32	0	6	61	1.21
1594033--1594138	16	6.4	16	66	23	51	27	0	8	64	1.22
1594160--1594198	9	4.6	8	84	12	51	12	2	2	82	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121