genome.fa.s79.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  68  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11611686--11611725	11	3.5	11	89	6	53	2	15	0	82	0.77
11623149--11623188	15	2.7	15	84	0	53	20	0	25	55	1.44
11623898--11623957	28	2.1	28	84	0	75	23	23	16	36	1.94
11624589--11624641	24	2.2	24	86	6	72	24	5	43	26	1.76
11624801--11624840	18	2.3	17	91	4	62	35	0	0	65	0.93
11624867--11624907	14	2.9	14	88	3	55	75	0	0	24	0.80
11624873--11624907	5	7.2	5	87	6	54	77	0	0	22	0.78
11624970--11625028	28	2.1	28	83	0	73	35	20	20	23	1.96
11625634--11625668	14	2.4	15	90	9	63	80	0	0	20	0.72
11625622--11625674	22	2.4	21	84	6	61	77	1	1	18	0.96
11626556--11626599	19	2.4	19	88	3	72	52	27	0	20	1.47
11627018--11627071	20	2.7	20	91	5	83	18	33	0	48	1.49
11627328--11627593	146	1.8	146	85	1	372	48	28	7	16	1.72
11631859--11631893	4	8.5	4	87	6	52	22	0	2	74	0.95
11631862--11631888	13	2.1	13	100	0	54	22	0	0	77	0.76
11631859--11631893	17	2.1	17	94	0	61	22	0	2	74	0.95
11635534--11635578	17	2.7	17	83	13	58	68	8	8	13	1.38
11646463--11646562	31	3.2	30	78	10	94	55	7	10	28	1.59
11650652--11650709	29	2.0	29	96	0	107	34	25	0	39	1.56
11658949--11658988	16	2.4	18	84	16	59	0	30	0	70	0.88
11658949--11658988	6	7.2	6	78	16	50	0	30	0	70	0.88
11673555--11673589	16	2.2	16	89	0	52	40	11	14	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11682140--11682196	30	1.9	30	85	7	80	28	22	10	38	1.87
11682637--11683608	42	23.5	42	75	6	421	37	12	19	29	1.89
11683018--11683577	41	13.5	41	76	6	265	39	13	18	28	1.89
11683111--11683411	122	2.4	122	76	4	284	41	14	16	27	1.87
11682801--11683603	83	9.7	83	74	6	402	37	13	19	29	1.90
11683885--11683925	17	2.4	16	84	11	55	48	7	9	34	1.64
11683858--11683962	54	1.9	54	90	7	169	43	7	17	31	1.77
11683895--11683962	17	3.8	17	72	24	68	45	5	16	32	1.71
11683902--11683978	37	2.1	37	97	0	145	45	6	20	27	1.76
11683902--11684006	37	2.9	37	87	7	117	45	9	19	25	1.80
11684533--11684580	7	6.9	7	85	0	69	45	31	10	12	1.76
11686302--11686360	31	1.9	30	86	10	84	6	16	3	72	1.20
11688634--11688834	7	30.3	7	72	16	101	16	0	35	46	1.54
11688650--11688754	12	9.0	12	72	21	55	17	0	36	46	1.48
11688676--11688830	12	12.2	12	74	11	89	18	0	33	47	1.53
11697203--11697318	37	3.1	37	78	1	115	33	8	21	36	1.84
11699302--11699337	17	2.1	17	94	0	63	30	5	19	44	1.73
11702943--11702991	21	2.3	20	80	16	55	28	10	8	53	1.63
11705579--11705608	2	15.0	2	100	0	60	50	0	0	50	1.00
11706105--11706143	3	12.3	3	89	10	60	64	0	0	35	0.94
11706353--11706377	12	2.1	12	100	0	50	32	0	8	60	1.26
11706606--11706692	45	1.9	44	81	9	104	22	18	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11709755--11709915	75	2.2	75	82	7	188	32	12	12	42	1.80
11709994--11710034	22	1.9	21	90	5	64	29	4	9	56	1.53
11721807--11723036	411	3.0	414	86	4	1739	42	11	15	30	1.82
11724798--11724847	21	2.4	21	80	6	57	16	40	18	26	1.90
11735575--11735609	16	2.2	16	89	0	52	40	11	14	34	1.82
11742388--11742419	17	1.9	17	93	6	57	31	9	0	59	1.29
11744126--11744182	30	1.9	30	85	7	80	28	22	10	38	1.87
11744610--11745158	42	13.3	42	74	5	350	36	11	20	30	1.89
11749515--11750753	411	3.0	411	87	3	1717	42	10	15	30	1.82
11752509--11752558	21	2.4	21	80	6	57	16	40	18	26	1.90
11762392--11762448	29	2.0	29	96	0	105	28	7	21	43	1.78
11763219--11763271	20	2.6	19	82	5	61	47	3	1	47	1.31
11763269--11763343	22	3.6	21	82	5	82	46	4	1	48	1.29
11763304--11763395	36	2.8	34	77	9	84	44	2	2	51	1.25
11763370--11763413	18	2.4	18	88	0	70	43	2	0	54	1.12
11763388--11763525	29	4.8	30	78	10	144	43	5	0	50	1.26
11763395--11763525	57	2.2	58	81	8	149	44	6	0	49	1.27
11763608--11763713	41	2.6	39	82	5	97	45	3	0	50	1.26
11763620--11763692	30	2.4	30	82	11	78	43	4	1	50	1.29
11763648--11763764	37	3.2	35	71	18	87	44	3	1	50	1.28
11763787--11763851	29	2.2	30	78	13	73	38	6	1	53	1.35
11763879--11764075	10	18.2	11	65	21	78	44	3	1	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11763869--11764183	21	14.3	21	67	21	87	42	3	2	51	1.32
11764264--11764333	27	2.5	29	79	4	90	41	1	2	54	1.24
11764928--11764978	24	2.1	24	81	0	57	13	7	7	70	1.32
11765913--11765977	28	2.3	29	78	7	71	36	1	1	60	1.16
11775113--11775144	15	2.1	15	100	0	64	28	18	28	25	1.98
11784636--11785524	60	15.3	57	79	9	747	49	6	10	33	1.64
11784652--11785516	177	5.0	175	81	7	838	49	6	10	33	1.63
11796134--11796272	55	2.6	54	82	10	174	55	14	13	16	1.70
11797050--11797372	85	3.8	85	78	9	275	22	15	13	49	1.78
11797226--11797408	86	2.1	85	84	6	228	20	14	15	48	1.81
11797407--11797608	85	2.4	85	79	4	203	21	20	14	43	1.88
11797671--11797816	78	1.9	78	85	5	206	20	18	15	45	1.85
11797736--11797899	85	1.9	85	83	4	215	21	17	14	46	1.84
11798920--11798964	23	2.0	21	84	16	56	40	4	2	53	1.33
11798982--11799518	112	4.7	115	80	8	485	47	6	10	35	1.65
11798982--11799559	55	10.1	58	74	9	339	46	6	11	35	1.66
11799002--11799559	290	1.9	286	80	7	642	46	6	11	34	1.66
11811095--11811142	15	3.1	15	80	14	53	27	8	0	64	1.22
11812397--11812427	13	2.5	13	94	5	55	38	0	0	61	0.96
11813813--11813848	18	2.0	18	88	0	54	75	11	5	8	1.19
11815480--11815518	20	1.9	21	89	5	62	58	7	17	15	1.59
11817383--11817470	44	2.0	44	93	4	151	4	26	4	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11817481--11817525	21	2.2	20	84	4	54	6	13	2	77	1.05
11820628--11820665	3	12.7	3	89	10	60	28	0	0	71	0.87
11821523--11821552	14	2.2	14	94	5	53	13	0	0	86	0.57
11821523--11821611	14	6.2	13	71	16	52	17	3	4	74	1.13
11821524--11821575	19	2.7	19	77	14	52	17	1	3	76	1.02
11821544--11821602	26	2.3	25	85	2	73	18	5	6	69	1.30
11821668--11821786	46	2.6	43	83	14	125	66	6	2	24	1.28
11821771--11821825	23	2.2	25	81	9	69	63	10	0	25	1.27
11826748--11827036	33	8.8	33	76	7	196	34	18	16	30	1.93
11826748--11827039	65	4.5	65	74	9	193	34	18	16	30	1.93
11826748--11827039	98	3.0	98	81	6	290	34	18	16	30	1.93
11827116--11827174	23	2.6	23	86	2	75	28	18	23	28	1.98
11827947--11827995	22	2.2	22	82	7	55	36	18	10	34	1.85
11828187--11828466	46	6.1	45	76	7	251	33	6	11	48	1.65
11828205--11828267	24	2.7	24	76	13	69	33	1	11	53	1.46
11828187--11828452	92	2.9	91	83	3	318	34	6	11	48	1.64
11828174--11828455	138	2.0	138	80	5	311	34	6	12	47	1.65
11828477--11828539	20	3.3	18	76	18	65	80	12	1	4	0.93
11828571--11828626	24	2.3	25	90	9	89	69	7	3	19	1.27
11836855--11836962	37	2.9	37	79	1	137	30	22	12	35	1.90
11840419--11840461	23	1.9	22	85	4	59	83	0	9	6	0.80
11840416--11840461	16	2.9	16	75	15	51	84	0	8	6	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11847291--11847904	233	2.7	231	81	5	681	46	11	8	32	1.72
11847845--11848078	123	1.9	123	87	0	342	55	9	8	26	1.61
11856307--11856336	10	3.0	10	95	0	51	36	10	23	30	1.87
11857812--11857850	16	2.5	15	83	8	51	66	2	0	30	1.05
11857892--11857929	17	2.2	18	90	4	60	81	5	0	13	0.85
11860727--11860900	79	2.3	79	80	8	191	35	16	12	35	1.86
11863344--11863378	15	2.2	16	90	5	54	80	2	0	17	0.84
11863814--11863852	19	2.2	19	86	9	55	35	5	10	48	1.59
11867618--11867692	39	1.9	39	88	0	114	20	26	13	40	1.89
11869888--11869965	38	2.1	38	92	0	129	35	5	23	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121