genome.fa.s79.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  97  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16500100--16500175	27	2.7	28	88	10	111	26	19	17	36	1.94
16502237--16502308	29	2.6	27	82	10	90	45	0	2	51	1.15
16502383--16502458	28	2.8	28	82	6	93	48	1	1	48	1.18
16503217--16503276	27	2.3	27	97	2	113	51	0	10	38	1.35
16503229--16503285	27	2.1	27	86	3	78	54	1	10	33	1.45
16504358--16504401	22	2.0	21	83	12	54	63	2	4	29	1.26
16505840--16505873	16	2.1	16	89	10	52	67	0	2	29	1.05
16506043--16506077	17	2.1	17	94	0	61	68	5	2	22	1.24
16507122--16507159	19	2.1	17	90	9	58	34	0	0	65	0.93
16508211--16508258	20	2.2	21	85	14	62	62	4	0	33	1.14
16509050--16509097	24	2.0	24	100	0	96	25	4	8	62	1.41
16509694--16509722	13	2.1	14	93	6	51	41	0	0	58	0.98
16522105--16522145	22	1.9	21	85	5	55	60	2	9	26	1.40
16527321--16527411	44	2.1	44	97	0	173	45	38	2	14	1.57
16528517--16528557	2	20.5	2	94	0	73	48	0	48	2	1.14
16528797--16528837	18	2.2	20	76	24	54	65	0	2	31	1.05
16529989--16530068	8	9.5	8	76	14	72	72	2	2	22	1.09
16529981--16530076	18	5.9	16	73	19	56	73	4	2	19	1.09
16529979--16530053	9	8.7	9	79	16	70	74	2	1	21	1.01
16530573--16530605	12	2.8	12	90	0	57	57	21	0	21	1.41
16535527--16535568	18	2.4	17	84	7	57	66	0	19	14	1.25
16535539--16535576	17	2.2	18	85	4	51	71	0	18	10	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16535634--16535675	13	3.5	12	78	21	52	76	0	21	2	0.90
16535636--16535677	12	3.6	12	78	15	52	76	0	21	2	0.90
16536128--16536204	35	2.2	35	86	4	102	23	25	6	44	1.77
16536416--16536544	40	3.2	40	73	13	111	37	21	11	29	1.89
16536620--16536740	48	2.5	47	80	10	129	32	11	14	42	1.81
16537254--16537296	20	2.2	19	83	4	50	69	9	2	18	1.26
16538870--16538894	13	1.9	13	100	0	50	52	0	0	48	1.00
16539627--16539685	6	10.0	6	80	10	59	77	0	3	18	0.90
16539627--16539685	11	5.0	12	72	12	59	77	0	3	18	0.90
16539633--16539685	21	2.6	20	82	11	72	77	0	3	18	0.92
16539626--16539685	24	2.6	23	79	10	68	78	0	3	18	0.89
16540072--16540124	3	16.7	3	81	11	61	62	1	1	33	1.17
16540092--16540163	7	10.4	7	70	14	51	59	2	0	37	1.12
16540072--16540127	20	2.9	20	89	5	80	62	1	1	33	1.16
16548181--16548341	46	3.5	46	82	9	202	33	14	13	38	1.85
16548160--16548337	92	1.9	91	82	10	218	33	14	14	38	1.85
16554483--16554614	62	2.1	62	84	6	171	31	15	15	37	1.89
16557766--16558055	144	2.0	144	100	0	580	27	16	23	31	1.96
16565691--16565715	1	25.0	1	100	0	50	100	0	0	0	0.00
16567384--16567433	25	2.0	25	92	0	82	50	14	18	18	1.79
16568753--16568789	16	2.2	17	90	4	58	43	0	0	56	0.99
16568758--16568834	24	2.9	27	74	18	63	48	0	1	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16571526--16571550	10	2.5	10	100	0	50	24	32	16	28	1.96
16573432--16573477	15	3.0	15	83	3	56	67	4	2	26	1.21
16573880--16573921	21	2.0	21	95	4	77	50	0	0	50	1.00
16573983--16574022	16	2.6	15	88	4	53	60	5	0	35	1.19
16591115--16591284	39	4.4	38	83	5	216	47	18	10	23	1.79
16591115--16591290	77	2.3	77	84	4	223	46	19	10	23	1.81
16592385--16592439	9	5.6	9	78	18	56	3	14	1	80	0.94
16599754--16599780	14	1.9	14	100	0	54	37	0	33	29	1.58
16603340--16603384	15	3.1	15	87	12	58	68	0	2	28	1.01
16605177--16605203	2	13.5	2	100	0	54	51	0	0	48	1.00
16609966--16609991	2	13.0	2	100	0	52	50	0	0	50	1.00
16627568--16627628	31	2.0	31	87	6	88	27	16	16	39	1.90
16627586--16627737	34	4.6	34	80	2	148	29	10	19	40	1.85
16635460--16637438	187	10.6	186	83	3	2272	33	14	12	39	1.83
16635460--16637438	562	3.5	559	85	3	2530	33	14	12	39	1.83
16635459--16637468	373	5.4	372	84	3	2399	33	14	12	39	1.83
16637995--16638062	12	5.5	12	72	6	55	23	7	23	45	1.78
16637995--16638085	25	3.6	25	86	2	112	23	6	24	46	1.76
16638703--16638816	56	2.1	55	88	1	165	40	13	13	33	1.83
16638808--16638948	62	2.3	63	85	8	191	31	12	12	43	1.80
16639049--16639185	65	2.1	63	82	7	161	36	16	10	36	1.83
16639249--16639459	108	2.0	108	92	1	352	31	16	9	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16639669--16639793	64	1.9	65	83	3	162	39	14	10	36	1.80
16640321--16640377	14	4.1	13	75	20	53	73	1	1	22	1.02
16640321--16640397	24	3.5	22	70	19	54	71	1	2	24	1.06
16642420--16642446	3	9.0	3	100	0	54	33	0	0	66	0.92
16643472--16643682	114	1.8	115	94	1	379	41	13	8	36	1.75
16643616--16643754	66	2.1	67	90	1	226	46	8	13	31	1.74
16644265--16644352	44	2.0	44	97	0	167	31	10	13	44	1.77
16647279--16647318	20	2.0	20	85	0	53	47	10	10	32	1.70
16647419--16647447	3	9.7	3	100	0	58	34	0	0	65	0.93
16649536--16649590	27	2.0	27	86	6	76	56	0	7	36	1.27
16649689--16649740	26	2.0	26	85	7	70	51	0	0	48	1.00
16649785--16649809	12	2.1	12	100	0	50	52	0	0	48	1.00
16649817--16649865	23	2.2	23	89	7	75	57	2	0	40	1.10
16651402--16651444	22	2.0	22	90	0	68	62	2	0	34	1.08
16654605--16654639	18	1.9	19	88	11	56	48	2	8	40	1.49
16655599--16655647	20	2.5	20	76	6	55	46	8	2	42	1.45
16655587--16655813	123	1.9	122	84	5	307	35	7	5	51	1.54
16656370--16656402	16	2.0	17	88	5	50	21	6	6	66	1.35
16656866--16656906	9	4.6	9	85	8	57	19	0	2	78	0.87
16661870--16661933	24	2.8	22	77	15	58	71	0	15	12	1.14
16662823--16662867	20	2.2	20	88	0	63	40	17	6	35	1.76
16663048--16663103	21	2.7	21	80	0	58	37	1	14	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16663231--16663273	23	1.9	23	85	4	61	44	13	11	30	1.80
16663584--16663822	16	14.9	16	72	14	129	34	11	14	39	1.83
16663699--16663822	47	2.6	46	78	13	110	35	13	12	38	1.82
16663837--16664010	49	3.6	49	76	9	149	36	17	12	33	1.87
16663989--16664028	18	2.2	18	95	0	71	40	20	12	27	1.88
16679607--16679890	141	2.0	142	95	1	507	32	16	11	39	1.85
16680572--16680633	17	3.4	17	72	23	63	6	25	45	22	1.76
16680570--16680646	38	2.1	37	90	2	118	7	24	45	22	1.78
16681170--16681204	13	2.7	13	86	0	52	0	0	14	85	0.59
16681596--16681658	17	3.8	18	83	12	73	1	4	12	80	0.93
16681613--16681658	22	2.1	22	88	4	67	0	4	10	84	0.75
16681610--16681661	5	11.0	5	84	12	58	0	3	13	82	0.80
16682472--16682535	16	3.9	16	71	21	53	34	4	0	60	1.17
16682503--16682535	15	2.3	15	89	5	50	30	0	0	69	0.88
16682478--16682535	30	1.9	30	83	13	75	31	5	0	63	1.16
16682791--16682906	61	1.9	61	83	0	151	28	6	12	51	1.66
16694301--16694341	21	2.0	21	85	9	57	53	4	24	17	1.63
16694727--16694772	23	2.0	23	86	0	65	63	13	15	8	1.52
16696944--16696969	9	2.9	9	100	0	52	7	0	0	92	0.39
16696943--16696971	9	3.0	10	90	10	51	10	0	0	89	0.48
16697534--16697625	47	1.9	48	86	2	132	32	4	5	57	1.41
16697844--16697970	62	2.0	65	80	13	149	39	4	8	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16699577--16699611	15	2.3	15	90	0	52	74	5	0	20	1.02
16701324--16701354	10	3.1	10	95	0	53	51	0	45	3	1.17
16702465--16702652	104	1.8	102	80	6	227	47	10	6	35	1.65
16707684--16707799	46	2.5	45	80	6	117	36	7	12	43	1.72
16707723--16707807	24	3.6	24	74	15	79	37	7	8	47	1.61
16707717--16707871	46	3.4	45	74	7	134	38	9	12	39	1.77
16707976--16708089	34	3.4	34	78	8	97	30	19	16	33	1.94
16707997--16708083	17	5.2	17	74	2	77	28	18	19	33	1.95
16708261--16708294	17	2.0	17	88	0	50	32	8	17	41	1.80
16708562--16708719	44	3.6	43	79	6	140	30	12	12	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121