genome.fa.s79.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  43  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7549157--7549220	22	2.9	22	77	9	67	7	25	0	67	1.17
7552351--7552401	3	17.0	3	95	0	93	64	1	0	33	1.05
7554233--7554271	12	3.3	11	89	7	51	15	7	17	58	1.59
7559028--7559076	12	4.0	13	74	15	59	59	0	34	6	1.22
7559028--7559076	18	2.7	18	77	0	62	59	0	34	6	1.22
7565971--7566016	18	2.4	19	85	10	58	8	6	2	82	0.91
7565970--7566018	10	4.8	10	80	5	53	8	6	2	83	0.87
7574395--7574455	17	3.6	17	68	12	54	62	0	4	32	1.17
7574481--7574505	11	2.3	11	100	0	50	44	0	0	56	0.99
7575435--7575483	25	2.0	25	83	0	62	36	0	2	61	1.08
7576055--7576096	21	2.0	21	85	0	57	42	11	7	38	1.69
7576095--7576129	17	2.1	17	88	0	52	37	0	0	62	0.95
7577315--7577344	13	2.4	13	94	5	53	36	3	6	53	1.44
7577582--7577624	21	2.0	21	86	0	59	41	11	6	39	1.68
7578185--7578267	14	5.9	14	73	16	64	49	1	3	45	1.27
7579059--7579090	13	2.5	13	89	0	55	28	12	0	59	1.34
7584648--7584732	36	2.4	36	89	0	134	41	7	22	29	1.80
7594216--7594391	86	2.0	86	98	0	343	25	18	26	29	1.98
7594576--7594608	17	1.9	17	88	11	50	69	0	15	15	1.19
7594927--7594951	13	1.9	13	100	0	50	80	0	0	20	0.72
7599846--7599881	13	2.8	13	100	0	72	30	8	22	38	1.83
7605100--7605152	22	2.3	23	90	3	81	30	0	1	67	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7607190--7607218	15	1.9	15	100	0	58	58	6	0	34	1.25
7616481--7616516	19	1.9	18	88	5	54	47	0	36	16	1.47
7618110--7618172	21	3.0	21	65	17	58	52	4	19	23	1.65
7620843--7620874	2	16.0	2	100	0	64	0	50	0	50	1.00
7627043--7627081	16	2.2	19	86	13	57	25	12	7	53	1.65
7631736--7631773	17	2.2	18	90	4	60	44	0	0	55	0.99
7638000--7638059	21	2.9	22	75	12	54	66	5	5	23	1.31
7646449--7646511	32	1.9	32	83	3	81	36	6	19	38	1.77
7648386--7648439	26	2.1	26	96	0	99	33	18	1	46	1.60
7652416--7652457	13	3.4	13	87	6	61	11	0	0	88	0.53
7652416--7652460	21	2.0	23	87	8	67	15	0	0	84	0.62
7656268--7656299	16	1.9	17	93	6	57	71	0	15	12	1.14
7657257--7657308	19	2.8	19	76	2	52	40	36	0	23	1.55
7659580--7659633	27	2.0	28	86	10	78	75	1	20	1	0.98
7659580--7659648	15	4.7	15	72	18	56	76	1	18	2	0.98
7659560--7659648	10	8.8	10	72	17	60	75	2	19	3	1.05
7659594--7659648	11	5.1	11	77	16	53	78	1	18	1	0.94
7659580--7659642	22	3.0	22	74	25	64	74	1	20	3	1.04
7662748--7662780	15	2.3	15	89	5	50	75	0	15	9	1.03
7666258--7666323	21	3.2	20	75	12	62	56	13	3	27	1.52
7667059--7667094	17	2.1	17	89	0	54	36	19	16	27	1.93
7667807--7668604	128	6.2	126	79	7	761	39	8	7	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7667902--7668604	258	2.7	262	81	6	735	39	8	7	44	1.64
7672344--7672418	35	2.1	36	82	7	91	30	8	12	49	1.68
7674126--7674158	15	2.1	16	88	5	50	24	6	12	57	1.57
7679056--7679088	17	1.9	17	88	11	50	3	12	3	81	0.91
7682065--7682097	16	2.0	17	94	5	59	21	18	6	54	1.64
7688211--7688263	18	2.8	18	78	16	63	67	1	0	30	1.01
7693856--7693888	3	11.0	3	100	0	66	33	0	0	66	0.92
7700033--7700089	28	2.0	28	83	6	71	50	3	1	43	1.29
7704984--7705012	12	2.4	12	100	0	58	55	0	0	44	0.99
7705176--7705208	16	2.0	17	88	5	50	39	0	3	57	1.14
7705461--7705486	13	2.0	13	100	0	52	30	0	0	69	0.89
7712416--7712454	20	2.0	20	89	0	60	20	10	30	38	1.86
7713603--7713636	13	2.6	13	85	0	50	41	0	20	38	1.53
7713829--7713880	20	2.6	20	78	0	68	36	21	15	26	1.93
7714553--7714612	31	2.0	30	83	3	75	60	3	8	28	1.42
7714603--7714703	22	4.9	19	72	12	67	53	5	7	32	1.54
7714647--7714706	19	3.0	20	78	9	61	48	3	8	40	1.50
7716093--7716394	99	3.1	99	90	0	489	42	11	7	39	1.69
7716677--7717025	181	1.9	182	97	1	657	50	9	8	31	1.66
7717936--7717977	20	2.2	20	87	12	61	38	0	7	54	1.28
7718106--7718186	5	14.8	5	73	14	54	71	3	6	18	1.22
7718147--7718172	11	2.4	11	100	0	52	76	7	0	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7718579--7718616	10	3.8	10	83	13	51	73	10	0	15	1.09
7718579--7718616	20	1.9	20	94	0	67	73	10	0	15	1.09
7719006--7719050	21	2.1	22	91	4	74	73	0	2	24	0.95
7719006--7719050	11	4.2	11	88	5	65	73	0	2	24	0.95
7719677--7719712	18	2.0	18	88	0	54	27	27	11	33	1.91
7722766--7722819	20	2.7	20	75	16	58	37	1	3	57	1.27
7722963--7723003	19	2.2	19	86	4	57	78	4	2	14	1.03
7723391--7723432	19	2.2	19	91	4	66	73	16	0	9	1.08
7723396--7723433	10	4.0	9	90	10	58	73	13	0	13	1.09
7723855--7723904	6	7.8	6	82	12	64	82	0	0	18	0.68
7723854--7723904	13	3.9	13	84	5	68	82	0	0	17	0.67
7723855--7723904	20	2.6	19	87	6	82	82	0	0	18	0.68
7723953--7724010	25	2.3	26	78	3	64	27	24	25	22	2.00
7725658--7725738	43	1.9	43	89	2	128	41	4	8	44	1.57
7726318--7726438	41	2.9	41	85	3	145	33	4	10	51	1.56
7726581--7726615	17	1.9	17	88	11	52	82	0	2	14	0.77
7728818--7728871	26	2.1	26	100	0	108	44	14	18	22	1.86
7729531--7729570	17	2.4	17	86	0	53	25	0	20	55	1.44
7737731--7737991	123	2.1	127	79	6	289	39	7	10	42	1.68
7750243--7750318	34	2.2	34	85	0	107	32	2	15	48	1.59
7750254--7750328	34	2.2	34	80	0	87	40	4	13	42	1.63
7757983--7758928	367	2.6	365	86	1	1293	34	12	12	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7760399--7760438	13	3.2	13	82	7	55	20	2	30	47	1.63
7760388--7760438	25	2.0	25	88	0	75	19	3	29	47	1.68
7763771--7764002	126	1.8	126	82	5	299	32	12	14	40	1.84
7763763--7764036	126	2.2	125	77	5	275	31	14	14	39	1.87
7767180--7767247	24	2.7	25	82	13	70	22	4	2	70	1.18
7767198--7767250	24	2.4	21	87	12	79	24	3	0	71	1.02
7768598--7768639	21	2.0	21	95	0	75	28	2	4	64	1.26
7772605--7772631	14	1.9	14	100	0	54	44	0	11	44	1.39
7773862--7773899	3	12.7	3	94	0	67	31	2	0	65	1.06
7774662--7774699	17	2.0	20	85	14	55	21	2	0	76	0.91
7783349--7783424	35	2.2	34	84	11	100	34	9	2	53	1.46
7786748--7786786	20	1.9	21	89	5	62	17	17	5	58	1.56
7790163--7790195	3	11.0	3	100	0	66	66	0	0	33	0.92
7791934--7791998	18	3.3	18	75	22	60	53	1	1	43	1.19
7791940--7792052	23	5.1	22	73	12	97	53	1	1	43	1.21
7791934--7792035	41	2.5	40	80	13	102	53	1	1	42	1.23
7792133--7792175	16	2.6	17	82	14	54	46	0	2	51	1.13
7792110--7792205	32	3.1	31	76	11	81	44	1	2	52	1.19
7792302--7792343	14	2.9	15	79	13	52	38	4	4	52	1.44
7796325--7796392	3	22.7	3	80	16	79	30	2	0	66	1.07
7798205--7798473	94	2.8	96	79	8	280	40	14	12	31	1.83
7798205--7798506	94	3.2	92	77	10	279	39	15	12	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7798367--7798527	48	3.4	48	78	10	136	44	15	10	29	1.80
7798435--7798527	47	1.9	48	85	8	127	44	19	10	25	1.83
7798915--7798956	17	2.6	17	81	7	52	11	19	4	64	1.44
7803728--7803784	19	2.9	21	77	20	68	56	0	1	42	1.10
7804228--7804277	18	2.6	19	78	15	59	24	8	6	62	1.46
7809788--7810718	186	5.0	184	84	3	1104	37	11	14	36	1.83
7809755--7810718	372	2.6	369	84	3	1269	37	11	14	35	1.83
7809787--7810882	558	2.0	555	78	8	1145	38	12	14	35	1.83
7813412--7813468	21	2.7	21	77	0	60	28	7	22	42	1.80
7820733--7820847	35	3.3	34	66	12	90	40	7	4	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121