genome.fa.s79.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  22  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3950587--3950635	21	2.3	22	82	7	64	51	2	10	36	1.48
3950595--3950650	22	2.6	21	85	2	67	50	0	12	37	1.41
3950532--3950635	41	2.5	43	80	3	122	50	2	8	38	1.48
3951521--3951553	13	2.4	14	90	5	50	69	3	0	27	1.03
3951601--3951651	23	2.4	20	76	17	57	54	1	1	41	1.22
3952031--3952608	22	26.5	22	68	11	158	48	4	7	38	1.53
3952103--3952209	45	2.4	45	82	3	126	52	0	8	38	1.38
3952103--3952167	23	2.9	22	76	13	69	49	0	9	41	1.35
3952318--3952371	21	2.5	21	79	11	56	48	3	5	42	1.44
3952326--3952423	51	1.9	52	81	10	121	45	4	6	43	1.47
3952903--3953026	43	2.9	44	76	7	139	52	5	8	33	1.54
3952922--3953087	22	7.7	21	70	16	108	49	4	10	36	1.56
3952903--3953029	22	5.9	23	75	14	85	51	5	7	34	1.54
3953262--3953330	21	3.2	21	76	8	68	55	5	2	36	1.39
3953623--3953666	21	2.1	22	83	8	56	52	13	2	31	1.53
3953769--3953809	21	2.0	21	95	0	73	46	0	7	46	1.30
3958867--3958915	9	5.2	9	78	9	53	22	10	18	48	1.77
3960441--3960482	18	2.2	19	87	8	59	45	9	2	42	1.49
3963311--3963353	2	21.5	2	100	0	86	48	0	0	51	1.00
3968218--3968278	30	2.0	30	96	0	113	40	4	8	45	1.55
3968376--3968426	2	26.0	2	88	4	77	47	1	1	49	1.24
3969996--3970149	16	9.6	16	71	10	109	18	0	34	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3969912--3970059	51	2.9	50	77	11	122	20	0	33	45	1.51
3969993--3970149	33	4.9	32	73	8	140	18	0	35	45	1.50
3971881--3972211	110	3.0	110	85	1	403	36	16	21	25	1.94
3972051--3972101	23	2.2	24	85	7	77	29	21	23	25	1.99
3972057--3972102	23	2.0	23	95	0	83	28	26	23	21	1.99
3971905--3972211	111	2.8	109	84	3	364	37	17	20	24	1.93
3972176--3972248	22	3.4	22	74	11	78	30	19	23	27	1.98
3972191--3972256	21	3.1	21	72	12	71	27	19	25	27	1.99
3972172--3972256	43	2.0	43	92	0	143	30	20	23	25	1.98
3972320--3972367	22	2.1	22	88	3	69	31	18	22	27	1.97
3972067--3972363	152	1.9	154	86	2	429	36	18	20	24	1.95
3972324--3972387	23	2.8	23	88	2	85	31	17	21	29	1.96
3972198--3972520	133	2.5	131	84	4	409	35	17	20	26	1.95
3972459--3972566	23	4.7	23	94	1	182	28	18	24	28	1.98
3972328--3972671	179	1.9	178	85	0	472	35	16	20	26	1.94
3972529--3972786	110	2.3	110	85	5	342	39	17	18	23	1.92
3972750--3972825	23	3.4	23	80	5	86	31	19	21	27	1.97
3972660--3972956	154	1.9	154	90	0	477	36	18	20	24	1.95
3972896--3972984	22	4.0	22	83	2	106	26	21	24	26	1.99
3973762--3974688	33	28.5	33	79	11	821	33	15	21	29	1.94
3975919--3975962	11	3.8	11	85	8	52	2	6	4	86	0.77
3982680--3982722	14	2.9	14	79	6	50	18	0	32	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3982622--3982760	51	2.7	51	78	9	124	18	0	33	47	1.49
3982697--3982866	16	10.6	16	69	13	82	20	1	32	46	1.58
3982757--3982876	17	7.2	17	72	14	90	18	1	31	48	1.58
3982755--3982866	33	3.4	32	72	12	102	18	1	32	47	1.59
3986940--3986972	2	17.0	2	93	6	59	48	0	0	51	1.00
3989846--3989876	15	2.1	15	93	0	53	41	29	6	22	1.78
3990521--3990557	2	18.5	2	100	0	74	51	0	0	48	1.00
3991110--3991144	2	18.0	2	94	5	63	48	0	0	51	1.00
3991615--3991653	14	2.8	14	84	0	51	51	0	0	48	1.00
3991614--3991655	21	2.0	21	90	0	66	52	0	0	47	1.00
3994562--3994620	26	2.3	27	85	8	86	52	0	1	45	1.10
3994776--3994815	21	1.9	21	89	0	62	45	0	2	52	1.14
3994770--3994821	21	2.5	20	81	9	59	44	0	1	53	1.11
3995156--3995239	42	2.0	42	81	4	98	48	3	2	45	1.32
3995259--3995308	23	2.1	24	82	10	59	60	0	0	40	0.97
3995267--3995308	16	2.7	16	85	3	50	59	0	0	40	0.97
4008707--4009555	423	2.0	423	97	0	1601	34	6	7	51	1.56
4008794--4009652	214	4.0	211	78	10	683	34	6	8	50	1.57
4010933--4010964	16	1.9	17	93	6	57	9	0	6	84	0.78
4010970--4011006	10	3.7	10	85	0	56	78	8	2	10	1.06
4011414--4011442	11	2.7	11	94	5	51	48	6	0	44	1.29
4014006--4014089	18	4.5	19	71	15	68	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4014160--4014215	23	2.4	23	76	5	60	58	10	0	30	1.32
4015036--4015073	2	19.5	2	89	5	60	55	0	0	44	0.99
4015999--4016029	2	15.5	2	100	0	62	51	0	0	48	1.00
4017117--4017178	27	2.2	26	83	11	70	53	0	3	43	1.17
4017117--4017205	29	3.1	29	84	9	96	51	0	3	44	1.18
4022433--4022466	3	11.3	3	100	0	68	32	0	0	67	0.91
4023283--4023324	3	14.7	3	80	9	52	28	0	4	66	1.12
4023352--4023406	17	3.4	16	83	14	60	74	3	1	20	1.06
4023348--4023411	31	2.1	30	83	13	78	75	3	1	20	1.03
4023352--4023413	15	4.1	14	79	20	56	75	3	1	19	1.02
4023871--4023902	7	4.4	7	96	4	55	71	0	0	28	0.86
4035906--4035970	33	2.0	33	90	0	103	29	10	20	40	1.86
4035939--4036379	39	11.3	38	81	6	384	26	9	21	43	1.83
4035978--4036379	118	3.4	116	81	8	422	26	9	20	42	1.83
4035938--4036379	157	2.8	154	83	6	523	26	9	21	42	1.83
4038047--4038108	25	2.5	26	74	10	67	62	3	1	32	1.20
4040305--4040335	2	15.5	2	93	0	53	51	0	0	48	1.00
4040644--4040686	23	1.9	22	90	4	68	58	0	0	41	0.98
4040644--4040689	24	2.0	22	87	8	65	58	0	0	41	0.98
4041758--4041811	22	2.7	21	81	18	62	61	1	0	37	1.07
4045195--4045223	14	2.0	15	93	6	51	13	6	3	75	1.13
4045203--4045243	18	2.3	18	86	0	55	21	2	0	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4045830--4045883	19	2.8	20	83	8	67	74	11	1	12	1.16
4045830--4045877	20	2.4	21	86	10	66	77	12	2	8	1.08
4047006--4047077	10	6.9	10	71	20	58	66	2	0	30	1.06
4046974--4047070	30	3.2	31	85	8	130	65	3	1	29	1.14
4047236--4047270	7	5.0	7	96	0	52	80	0	0	20	0.72
4047235--4047269	17	2.1	16	89	5	52	82	0	0	17	0.66
4047504--4047547	18	2.4	18	84	3	52	77	4	4	13	1.08
4047742--4047790	19	2.7	18	78	12	55	44	0	8	46	1.33
4055682--4055722	21	2.0	21	100	0	82	43	14	7	34	1.73
4057335--4057408	35	2.1	35	92	0	121	32	13	12	41	1.81
4058304--4058333	8	3.9	8	91	8	53	86	0	0	13	0.57
4058304--4058333	15	2.0	15	100	0	60	86	0	0	13	0.57
4059164--4059284	51	2.4	51	85	0	152	37	9	15	38	1.80
4059192--4059308	51	2.3	51	83	0	144	29	12	21	35	1.91
4059391--4059477	43	2.0	43	84	0	111	29	8	19	42	1.80
4061116--4061151	17	2.1	17	89	0	54	13	2	2	80	0.93
4061291--4061367	14	5.4	13	72	20	57	74	2	5	18	1.13
4061607--4061676	28	2.4	30	83	9	83	61	2	1	34	1.20
4065009--4065068	9	6.9	8	75	17	57	13	0	11	75	1.06
4065026--4065071	19	2.3	20	82	17	60	15	0	10	73	1.08
4064993--4065066	18	4.1	18	81	10	73	12	1	9	77	1.07
4065009--4065068	26	2.3	26	88	8	86	13	0	11	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4065139--4065228	28	3.2	27	89	6	135	35	17	21	25	1.95
4065479--4065797	98	3.3	95	77	7	327	37	21	13	28	1.90
4065478--4065804	146	2.2	145	82	6	376	37	21	12	28	1.90
4065479--4065804	48	6.7	48	78	6	311	37	21	12	28	1.90
4066591--4066630	19	2.1	19	90	0	62	10	12	0	77	0.99
4066591--4066628	9	4.1	9	90	6	58	10	10	0	78	0.95
4075397--4075622	60	3.9	59	85	9	311	34	13	8	43	1.74
4075397--4075622	116	1.9	118	90	2	366	34	13	8	43	1.74
4075639--4075729	6	14.7	6	77	16	80	76	1	4	17	1.00
4075646--4075744	22	4.5	22	73	15	73	75	1	4	19	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121