genome.fa.s79.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  27  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4731219--4731275	6	9.7	6	80	3	53	80	1	3	14	0.92
4731308--4731361	20	2.8	19	88	5	81	18	29	31	20	1.96
4731475--4731549	1	75.0	1	85	0	96	4	0	4	92	0.48
4731462--4731550	20	4.6	19	83	12	119	5	0	5	88	0.62
4731462--4731549	44	2.0	43	89	6	133	5	0	4	89	0.58
4731557--4732107	117	4.7	118	95	3	961	37	22	17	23	1.94
4731557--4732107	197	2.8	196	93	5	920	37	22	17	23	1.94
4731557--4732107	80	7.0	80	93	6	914	37	22	17	23	1.94
4733120--4733182	16	3.8	17	91	8	103	9	14	0	76	1.02
4733177--4733215	1	39.0	1	84	0	51	5	0	2	92	0.46
4733120--4733201	8	9.6	9	85	7	93	9	10	0	79	0.94
4733120--4733215	8	11.5	8	83	13	70	8	9	1	81	0.93
4733115--4733215	16	6.1	16	79	7	78	8	10	0	79	0.99
4733151--4733215	9	7.3	9	84	8	62	7	6	1	84	0.83
4733126--4733215	16	5.2	18	83	9	82	8	8	1	81	0.94
4738103--4738132	15	2.1	14	93	6	51	6	36	6	50	1.55
4743402--4743859	152	2.9	158	91	3	748	37	17	15	29	1.90
4744250--4744296	19	2.5	19	82	0	58	21	19	29	29	1.97
4744908--4744936	3	9.7	3	100	0	58	68	0	0	31	0.89
4745029--4745064	17	2.1	17	89	5	54	86	0	13	0	0.58
4745103--4745167	20	3.2	20	91	0	94	20	30	32	16	1.95
4745832--4745863	14	2.3	14	100	0	64	12	0	6	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747138--4747508	206	1.8	208	81	8	463	36	12	7	42	1.72
4748625--4748702	24	3.3	23	75	7	77	14	2	8	74	1.16
4751517--4751574	31	1.9	30	82	6	73	29	13	6	50	1.68
4754073--4754097	6	4.2	6	100	0	50	68	0	16	16	1.22
4754702--4754736	16	2.1	17	89	5	54	28	5	5	60	1.43
4760346--4760411	30	2.2	29	83	2	78	59	7	6	27	1.49
4767883--4767930	22	2.2	21	85	10	62	14	0	8	77	0.99
4767889--4767962	24	3.2	24	81	11	75	20	2	6	70	1.23
4768107--4768214	48	2.2	48	83	9	128	41	21	8	28	1.82
4768193--4768235	21	2.0	21	86	0	59	34	25	13	25	1.93
4768214--4768719	47	10.7	47	82	5	567	36	21	13	28	1.91
4768221--4768719	95	5.3	94	83	6	580	36	21	13	28	1.91
4768214--4768719	143	3.6	141	82	5	596	36	21	13	28	1.91
4772054--4772097	14	3.1	14	81	15	54	56	0	27	15	1.40
4777985--4778027	9	4.7	9	83	11	52	23	0	0	76	0.78
4777979--4778038	22	2.8	20	79	18	68	25	0	1	73	0.93
4777980--4778017	12	3.3	12	82	10	53	21	0	0	78	0.74
4777979--4778038	20	2.8	22	78	19	72	25	0	1	73	0.93
4778053--4778112	28	2.1	28	81	6	68	28	3	3	65	1.25
4778154--4778204	20	2.5	20	79	17	61	25	5	3	64	1.33
4778156--4778252	49	2.0	47	84	7	124	22	5	4	68	1.27
4778196--4778260	21	3.0	22	77	6	80	23	4	3	69	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4778268--4778312	18	2.4	18	88	7	63	13	11	6	68	1.37
4779133--4779171	4	9.8	4	88	0	60	23	0	2	74	0.94
4779141--4779175	16	2.2	16	100	0	70	17	0	5	77	0.96
4779306--4779591	59	4.7	59	82	11	355	47	6	10	34	1.65
4786250--4786285	18	2.0	18	89	10	56	77	2	8	11	1.08
4786250--4786286	19	2.0	18	89	5	56	78	2	8	10	1.06
4787301--4787415	41	2.8	41	89	2	169	23	16	21	38	1.93
4787301--4787458	41	3.8	42	84	8	153	24	16	21	37	1.93
4787649--4787681	15	2.1	16	94	5	59	21	0	0	78	0.75
4787715--4787783	3	21.7	3	84	11	68	31	1	1	65	1.11
4787818--4787940	20	5.5	22	67	25	62	24	4	2	68	1.22
4787818--4787865	19	2.6	17	81	15	60	25	6	4	64	1.35
4787835--4787907	30	2.4	29	80	11	76	26	5	1	67	1.21
4787872--4787925	22	2.5	22	87	3	74	27	5	0	66	1.13
4787931--4787980	19	2.5	19	90	9	73	10	8	8	74	1.24
4788843--4788890	20	2.3	21	92	3	80	18	0	6	75	1.01
4788841--4788881	4	10.2	4	89	0	64	21	0	4	73	1.02
4788920--4789000	5	15.8	5	73	19	53	13	6	2	77	1.05
4788920--4789000	6	13.5	6	68	19	53	13	6	2	77	1.05
4788920--4789000	17	4.9	17	70	18	55	13	6	2	77	1.05
4788927--4789005	18	4.2	19	78	12	67	13	6	2	77	1.07
4789017--4789413	59	6.7	57	78	10	377	45	6	11	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4790318--4790349	14	2.3	14	94	0	55	9	0	6	84	0.78
4790318--4790377	14	4.2	13	78	16	50	8	0	13	78	0.96
4792053--4792092	16	2.4	16	87	8	53	27	7	2	62	1.35
4793147--4793191	17	2.7	16	80	10	54	13	0	6	80	0.91
4793158--4793215	22	2.6	22	78	10	64	20	1	8	68	1.25
4793779--4793870	25	3.8	25	71	11	64	46	0	2	51	1.13
4798651--4798692	6	7.0	6	88	0	57	73	0	11	14	1.09
4799253--4799287	16	2.1	17	89	5	54	28	5	5	60	1.43
4801493--4801531	21	1.9	21	85	15	55	48	12	10	28	1.74
4808533--4808589	17	3.4	17	66	9	53	40	7	7	45	1.58
4808529--4808597	34	2.0	34	100	0	138	43	5	10	40	1.62
4809302--4809334	5	6.6	5	86	13	50	21	0	0	78	0.75
4810964--4811012	18	2.7	18	87	3	62	46	0	2	51	1.12
4810963--4811018	18	3.1	18	82	5	51	46	0	1	51	1.11
4815893--4815989	11	8.3	12	65	11	58	42	0	1	56	1.06
4815926--4815993	22	3.0	22	80	4	73	38	0	0	61	0.96
4815939--4816002	21	3.0	21	79	11	67	35	0	0	64	0.94
4815939--4816000	10	5.8	11	71	19	51	35	0	0	64	0.94
4816868--4816909	22	1.9	22	85	0	57	40	0	0	59	0.97
4818518--4818609	25	3.8	25	71	11	64	46	0	2	51	1.13
4819724--4819781	30	1.9	30	89	6	91	41	15	12	31	1.84
4820097--4820131	17	2.1	17	88	0	52	31	20	2	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4820796--4820853	31	1.9	30	82	6	73	29	13	6	50	1.68
4821944--4822044	40	2.5	40	87	6	134	40	16	11	30	1.85
4824034--4824069	17	2.1	17	89	0	54	27	5	5	61	1.41
4824873--4824919	24	2.0	24	91	0	76	8	21	12	57	1.62
4827279--4827317	21	1.9	21	85	15	55	48	12	10	28	1.74
4834425--4834458	16	2.1	17	94	5	61	14	0	5	79	0.91
4839541--4839595	18	3.0	18	74	12	58	34	3	5	56	1.40
4843996--4844063	29	2.3	29	87	2	100	51	4	13	30	1.60
4844303--4844332	14	2.1	14	93	0	51	56	10	0	33	1.32
4847432--4847485	3	18.7	3	92	7	94	33	0	0	66	0.92
4847706--4847771	26	2.6	25	81	9	89	75	7	13	3	1.13
4847721--4847790	29	2.4	29	83	4	88	78	10	10	1	1.03
4848327--4848469	6	24.3	6	81	8	71	19	2	4	72	1.15
4848344--4848404	25	2.5	25	81	7	63	14	3	6	75	1.13
4848412--4848486	3	26.0	3	86	8	111	32	0	1	66	1.00
4848675--4848717	23	1.9	22	90	4	68	76	0	0	23	0.78
4852676--4852700	12	2.1	12	100	0	50	60	16	16	8	1.58
4860876--4861006	39	3.3	39	81	5	156	25	11	19	43	1.84
4861086--4861410	39	8.4	38	80	5	310	27	8	20	43	1.82
4861086--4861416	77	4.2	77	78	5	308	26	9	20	43	1.81
4861595--4861646	4	12.8	4	76	11	52	30	0	0	69	0.89
4862422--4862546	6	20.0	6	75	14	65	17	2	6	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4862427--4862491	25	2.6	25	85	2	78	12	3	7	76	1.10
4862433--4862483	19	2.7	19	81	6	50	13	1	7	76	1.09
4862448--4862497	25	2.0	25	88	7	75	16	0	10	74	1.08
4862501--4862539	3	12.7	3	89	5	60	28	0	2	69	1.02
4863103--4863140	18	2.1	18	85	9	51	60	10	0	28	1.30
4863808--4863833	2	13.0	2	100	0	52	50	0	0	50	1.00
4864245--4864299	27	2.0	29	85	7	78	50	10	0	38	1.37
4864840--4864865	2	13.0	2	100	0	52	50	0	0	50	1.00
4874392--4874422	3	10.3	3	100	0	62	35	0	32	32	1.58
4877634--4877671	19	2.0	20	89	5	60	23	2	13	60	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121