genome.fa.s79.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  86  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14613982--14614034	16	3.3	16	70	19	56	43	1	11	43	1.51
14615916--14615954	18	2.1	18	85	4	51	28	10	17	43	1.82
14615728--14616474	313	2.4	315	79	5	769	31	11	17	40	1.85
14616123--14616415	159	1.8	160	84	3	403	31	10	17	39	1.85
14616507--14616536	2	15.0	2	100	0	60	50	0	0	50	1.00
14617022--14617066	21	2.1	21	84	8	56	44	11	26	17	1.82
14617280--14617309	12	2.5	12	94	0	51	56	10	13	20	1.65
14618186--14618227	19	2.3	18	80	15	50	78	4	2	14	1.01
14618473--14618531	31	1.9	31	82	0	73	45	20	5	28	1.72
14618985--14619044	3	20.0	3	92	0	102	65	3	0	31	1.09
14619161--14619198	13	2.9	13	84	11	51	71	0	2	26	1.00
14619153--14619195	8	5.1	8	81	10	50	72	2	2	23	1.08
14619135--14619197	26	2.3	27	86	10	85	66	1	1	30	1.10
14619810--14619862	21	2.7	21	82	8	58	71	13	3	11	1.26
14619796--14619855	21	2.8	21	74	5	57	68	11	6	13	1.39
14620044--14620090	19	2.3	21	82	10	62	72	0	19	8	1.10
14620270--14620321	26	2.0	26	85	7	70	59	11	9	19	1.59
14620979--14621025	6	7.8	6	92	0	58	68	14	0	17	1.22
14620982--14621016	9	3.9	9	88	0	52	68	20	0	11	1.20
14621141--14621186	23	2.1	22	92	8	76	65	0	4	30	1.12
14621446--14621521	24	3.1	23	82	14	82	68	0	1	30	0.98
14621471--14621524	17	3.1	17	76	21	58	66	0	1	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14621647--14621677	12	2.5	13	89	10	55	51	25	6	16	1.68
14621656--14621742	19	4.6	19	76	2	86	49	26	4	19	1.67
14621653--14621755	38	2.7	38	79	5	118	49	26	5	18	1.70
14621656--14621755	19	5.3	18	71	15	53	50	27	5	18	1.67
14622807--14622857	26	2.0	26	84	0	66	31	1	3	62	1.24
14627452--14627486	16	2.2	16	90	5	54	88	0	8	2	0.61
14629127--14629363	98	2.4	98	81	6	282	38	17	12	31	1.87
14628924--14629433	66	7.7	66	77	10	314	38	17	14	30	1.89
14628988--14629436	33	13.6	33	72	11	235	38	16	13	31	1.88
14629532--14629608	32	2.3	33	91	4	120	44	16	11	27	1.83
14629845--14629942	31	3.2	31	76	5	108	25	31	11	31	1.91
14630014--14630074	27	2.2	28	82	8	72	78	8	6	6	1.08
14629999--14630071	26	2.9	24	76	11	74	79	6	5	8	1.05
14630051--14630119	18	3.8	17	75	11	57	79	10	5	4	1.03
14630509--14630575	27	2.5	24	76	23	64	64	2	1	31	1.18
14630679--14630722	22	2.0	22	81	0	52	56	20	18	4	1.58
14632407--14632442	3	11.7	3	94	5	63	66	0	0	33	0.92
14632548--14632595	18	2.6	19	83	3	71	72	0	0	27	0.84
14632830--14632884	18	2.9	19	79	17	69	67	0	3	29	1.08
14632837--14632893	30	1.9	29	89	3	87	66	0	1	31	1.02
14633071--14633160	19	4.7	20	84	5	116	46	26	8	17	1.78
14633070--14633170	19	5.3	19	76	10	82	46	27	8	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14635348--14635378	16	1.9	16	93	0	53	87	3	6	3	0.75
14636588--14636632	18	2.6	18	82	10	58	84	8	0	6	0.78
14637281--14637319	15	2.6	15	84	8	53	58	0	2	38	1.12
14638369--14638404	18	1.9	19	88	5	56	30	2	0	66	1.06
14639889--14639969	27	3.0	27	88	0	117	25	18	25	29	1.98
14645157--14645197	3	13.7	3	100	0	82	31	0	0	68	0.90
14646058--14646102	13	3.7	13	71	17	51	8	2	11	77	1.07
14646060--14646102	12	3.7	12	76	17	54	6	2	11	79	1.02
14646180--14646420	60	3.9	61	71	19	180	49	4	10	35	1.59
14646213--14646350	66	2.1	65	78	10	147	50	5	11	32	1.63
14646280--14646421	58	2.4	60	83	11	177	47	6	9	36	1.62
14650288--14650369	31	2.9	29	75	21	84	73	0	12	14	1.11
14650307--14650369	30	2.1	30	88	8	92	76	0	9	14	1.02
14651016--14651128	59	1.9	59	81	0	136	37	13	21	28	1.91
14651067--14651216	79	1.9	79	84	0	201	39	9	20	30	1.84
14651641--14651700	21	2.9	21	82	9	79	38	6	15	40	1.73
14651721--14651776	20	2.7	21	86	2	78	41	10	10	37	1.75
14651664--14651957	79	3.7	79	81	4	362	38	8	16	35	1.80
14651803--14651859	20	2.8	20	83	2	69	40	7	14	38	1.73
14652233--14652298	16	4.2	16	72	1	53	28	16	18	36	1.93
14652244--14652308	32	2.0	32	87	0	94	30	15	18	35	1.92
14652469--14652650	44	3.9	47	80	13	173	20	12	20	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14652846--14652895	6	8.8	6	78	12	52	20	2	0	78	0.86
14653860--14654171	115	2.6	119	80	11	323	50	5	9	34	1.58
14653877--14654181	58	5.1	58	79	11	303	49	4	9	35	1.58
14654141--14654176	18	1.9	19	88	5	56	41	2	8	47	1.48
14656191--14656370	46	3.9	46	86	5	231	32	11	16	39	1.84
14656390--14656441	27	2.0	27	92	3	88	67	7	1	23	1.27
14656421--14656455	18	1.9	19	88	11	56	68	2	2	25	1.17
14656817--14656861	4	11.5	4	84	13	58	53	2	0	44	1.13
14658497--14658703	60	3.5	59	82	8	251	39	8	4	48	1.53
14658615--14658655	17	2.6	16	85	11	57	48	0	0	51	1.00
14658723--14658775	18	2.8	18	83	11	61	81	3	3	11	0.96
14659509--14659552	8	5.7	7	82	17	52	13	2	0	84	0.73
14659509--14659552	16	2.8	16	93	6	72	13	2	0	84	0.73
14659693--14659821	43	3.0	44	81	2	161	44	18	13	23	1.84
14659694--14659829	44	3.1	44	81	2	175	44	18	13	23	1.86
14659812--14659845	16	2.1	16	94	0	59	23	17	26	32	1.97
14659841--14660225	44	8.8	44	86	2	479	42	16	15	25	1.88
14659725--14659918	103	1.9	103	86	2	282	40	17	17	24	1.90
14659828--14660225	175	2.3	174	85	3	548	41	17	15	25	1.88
14659841--14660289	44	10.3	44	83	5	457	43	16	14	25	1.86
14659828--14660225	87	4.6	87	84	3	478	41	17	15	25	1.88
14668542--14668572	15	2.1	15	93	0	53	51	6	22	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14672637--14672665	8	3.8	8	90	9	51	13	0	0	86	0.58
14672639--14672671	7	4.7	7	85	14	50	12	0	0	87	0.53
14672637--14672671	14	2.4	14	95	4	61	14	0	0	85	0.59
14678136--14678160	8	3.1	8	100	0	50	28	24	12	36	1.91
14679739--14679770	5	6.8	5	86	13	50	0	0	15	84	0.63
14679739--14679770	13	2.3	15	89	10	50	0	0	15	84	0.63
14680839--14680869	2	16.0	2	93	6	55	48	0	0	51	1.00
14684306--14684380	30	2.5	30	85	10	107	48	4	13	34	1.61
14689790--14689827	12	3.0	12	85	14	58	78	0	7	13	0.94
14696135--14696179	24	1.9	24	81	4	56	11	6	6	75	1.18
14698148--14698177	11	2.7	11	89	0	51	6	0	10	83	0.81
14698494--14698559	16	4.3	15	83	9	73	13	0	9	77	0.99
14698500--14698582	39	2.1	40	84	8	107	18	0	8	73	1.07
14698500--14698558	23	2.5	23	81	8	66	15	0	10	74	1.06
14698524--14698596	18	4.2	17	76	20	55	19	1	2	76	0.98
14698514--14698594	32	2.5	32	81	13	87	19	1	4	74	1.08
14698507--14698597	39	2.4	37	81	17	91	18	1	6	73	1.11
14698627--14698916	42	6.8	43	79	4	293	41	18	12	27	1.86
14698679--14698916	127	1.9	127	85	6	331	41	17	12	28	1.86
14705664--14705739	40	1.9	40	94	0	134	47	15	9	27	1.76
14706284--14706337	20	2.7	20	79	0	63	51	9	5	33	1.57
14706604--14706680	32	2.4	32	91	0	127	55	10	5	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14706644--14706709	20	3.1	20	75	18	62	56	7	6	30	1.52
14706653--14706729	24	3.4	24	71	20	67	57	9	3	29	1.48
14708152--14708184	17	1.9	17	88	11	50	27	0	9	63	1.24
14709862--14710090	90	2.6	89	83	5	268	36	20	9	34	1.84
14713624--14713816	16	12.7	15	68	18	73	20	2	31	45	1.64
14713566--14713668	51	2.0	51	81	7	120	18	0	32	49	1.48
14713658--14713704	24	2.0	24	87	8	69	12	4	44	38	1.62
14713701--14713824	16	7.7	16	72	8	90	21	2	29	46	1.64
14713705--14713820	49	2.4	48	84	8	155	21	2	26	49	1.63
14715598--14715660	23	2.8	23	90	2	101	28	20	23	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121