genome.fa.s79.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  102  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17328680--17329021	45	8.0	43	72	13	201	43	19	13	23	1.86
17328807--17328985	85	2.1	84	81	10	213	41	19	14	24	1.88
17328737--17329040	41	7.1	42	70	15	137	43	19	12	25	1.85
17329407--17329460	21	2.6	21	81	0	72	35	7	7	50	1.59
17330132--17330306	63	2.8	63	88	0	260	32	22	8	36	1.85
17330965--17331025	7	8.1	8	72	17	51	8	16	0	75	1.03
17330981--17331051	25	2.8	24	78	17	65	8	18	0	73	1.08
17330972--17331037	29	2.2	30	83	2	80	9	16	0	74	1.06
17331332--17331362	12	2.6	12	100	0	62	9	6	0	83	0.79
17333856--17333943	12	7.2	12	71	20	58	29	0	7	62	1.23
17333855--17333958	16	6.6	15	71	19	70	28	0	7	63	1.22
17333855--17333985	61	2.2	58	80	14	133	28	0	6	64	1.22
17333876--17333970	16	5.7	17	70	13	56	31	0	6	62	1.20
17333879--17334042	61	2.7	60	77	16	144	27	3	4	64	1.28
17334373--17334425	25	2.1	25	82	6	63	35	5	18	39	1.75
17334565--17334602	20	1.9	20	88	0	58	36	23	13	26	1.91
17335014--17335440	120	3.6	121	83	8	534	45	7	11	34	1.69
17338893--17338934	9	4.8	9	91	5	68	88	0	2	9	0.61
17338893--17338934	17	2.4	18	84	15	61	88	0	2	9	0.61
17339266--17339310	9	4.9	9	83	5	63	84	0	13	2	0.72
17339254--17339329	22	3.8	21	75	24	83	78	0	15	5	0.91
17339267--17339321	19	2.8	19	86	5	74	83	0	14	1	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339256--17339329	9	7.4	10	79	13	55	78	0	16	5	0.93
17339252--17339340	19	4.6	18	72	18	63	78	0	15	5	0.93
17339254--17339339	8	8.8	10	68	25	51	79	0	15	5	0.92
17340558--17340924	40	9.0	40	88	6	501	22	17	21	38	1.93
17340581--17340924	81	4.2	81	90	7	511	22	18	21	37	1.94
17340558--17340924	121	3.0	121	91	4	585	22	17	21	38	1.93
17340931--17341004	7	9.9	8	85	7	86	89	10	0	0	0.49
17340934--17341004	9	7.7	9	83	12	90	88	11	0	0	0.51
17340931--17341004	38	1.9	39	94	5	134	89	10	0	0	0.49
17340931--17340996	1	66.0	1	81	0	78	90	9	0	0	0.44
17341194--17341281	12	7.2	12	71	20	58	29	0	7	62	1.23
17341185--17341388	61	3.3	58	75	19	164	26	2	5	65	1.27
17341193--17341296	16	6.6	15	71	19	70	28	0	7	63	1.22
17341214--17341308	16	5.7	17	70	13	56	31	0	6	62	1.20
17341709--17341761	25	2.1	25	82	6	63	35	5	18	39	1.75
17341770--17341840	31	2.3	32	83	11	94	28	23	22	25	2.00
17342159--17342191	5	6.6	5	92	0	57	18	39	39	3	1.66
17342375--17342771	60	6.7	58	84	11	486	45	7	12	33	1.71
17342376--17342770	119	3.3	114	86	8	535	45	7	12	33	1.71
17344542--17344788	57	4.1	58	75	9	194	34	10	4	50	1.57
17345195--17345234	12	3.3	12	86	10	55	27	0	0	72	0.85
17345202--17345268	12	5.3	12	77	7	53	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17345231--17345255	13	1.9	13	100	0	50	32	0	0	68	0.90
17347476--17347637	59	2.7	60	73	14	145	44	9	16	29	1.79
17347476--17347639	60	2.7	61	73	15	151	44	10	15	29	1.80
17347575--17347831	101	2.5	102	77	8	256	43	11	13	30	1.80
17352156--17352300	58	2.5	58	76	9	136	50	1	0	47	1.14
17353296--17353360	20	3.3	20	77	12	73	33	0	0	66	0.92
17353318--17353353	12	3.0	13	88	11	51	36	0	0	63	0.94
17353327--17353370	16	2.6	17	82	7	54	34	0	0	65	0.93
17355347--17355397	23	2.2	23	89	0	75	56	1	3	37	1.29
17355346--17355407	23	2.8	22	80	7	63	53	1	3	41	1.27
17355436--17355482	21	2.6	18	78	21	53	48	0	2	48	1.13
17363887--17363918	2	16.0	2	93	0	55	46	0	3	50	1.17
17366906--17366943	20	2.0	20	89	5	60	57	2	5	34	1.35
17367046--17367102	20	2.7	21	80	20	66	50	1	0	47	1.11
17367046--17367104	21	2.8	22	76	21	63	50	1	0	47	1.11
17367046--17367103	22	2.8	21	73	5	55	50	1	0	48	1.11
17368210--17368260	3	17.3	3	95	4	95	31	0	0	68	0.90
17368982--17369018	6	6.0	6	87	6	56	48	18	29	2	1.62
17368982--17369018	19	2.0	18	89	5	56	48	18	29	2	1.62
17378448--17378518	37	2.0	35	84	10	92	35	15	9	39	1.81
17386397--17386430	18	1.9	17	94	5	59	82	0	11	5	0.83
17391328--17391352	6	4.2	6	100	0	50	0	16	16	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17393206--17393248	8	5.1	8	81	10	50	41	0	0	58	0.98
17395243--17395271	2	14.5	2	100	0	58	48	0	0	51	1.00
17399396--17399597	106	1.9	106	84	2	271	37	6	4	50	1.51
17400236--17400279	20	2.0	22	87	12	65	25	4	4	65	1.30
17402662--17402695	14	2.5	13	86	13	50	41	0	8	50	1.34
17402707--17402805	32	3.0	32	80	10	94	39	4	11	45	1.59
17402662--17402818	34	4.7	33	72	12	108	38	4	10	46	1.59
17411205--17411293	43	2.1	43	100	0	178	29	14	22	33	1.94
17418531--17418592	18	3.3	18	75	4	61	58	3	0	38	1.15
17418529--17418611	37	2.3	34	75	22	80	54	2	0	43	1.13
17443039--17443097	1	59.0	1	75	0	55	88	6	3	1	0.69
17443041--17443097	21	2.7	20	81	8	69	87	7	3	1	0.71
17443630--17443686	23	2.5	23	80	11	64	73	5	15	5	1.19
17443630--17443699	16	4.7	15	72	10	54	72	4	18	4	1.17
17447391--17447442	20	2.8	18	83	16	63	55	1	0	42	1.10
17456766--17456800	13	2.8	12	87	8	52	77	5	0	17	0.96
17456778--17456811	17	2.0	17	88	0	50	79	2	2	14	0.97
17457373--17457420	21	2.3	22	89	7	73	39	8	4	47	1.53
17458085--17458128	19	2.4	19	85	11	56	47	2	0	50	1.13
17462934--17462958	11	2.3	11	100	0	50	72	0	0	28	0.86
17462957--17463014	29	2.0	29	89	0	89	39	0	1	58	1.08
17463324--17463383	19	3.2	18	79	6	57	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17463411--17463451	22	2.0	22	90	9	68	53	2	7	36	1.42
17463539--17463582	16	2.8	16	80	16	56	52	4	0	43	1.22
17464315--17464374	24	2.6	23	81	2	66	41	3	0	55	1.16
17467649--17467734	29	3.0	27	76	17	77	45	3	0	51	1.18
17467673--17467788	29	4.0	28	70	20	78	39	6	0	53	1.32
17468635--17468678	21	2.0	22	91	4	72	36	15	4	43	1.68
17471106--17471191	37	2.3	38	78	11	88	66	5	2	25	1.26
17471205--17471275	17	4.1	17	70	10	54	67	4	1	26	1.17
17471127--17471261	18	7.4	18	65	15	57	64	4	2	28	1.27
17471220--17471283	29	2.2	28	83	8	76	64	4	3	28	1.29
17471269--17471309	16	2.5	17	84	4	57	56	2	2	39	1.26
17474081--17474165	42	2.0	43	82	11	104	38	7	2	51	1.42
17476360--17476401	16	2.4	17	80	15	50	45	9	2	42	1.49
17478429--17478471	15	3.1	14	78	21	54	67	2	0	30	1.03
17478407--17478471	28	2.3	27	84	10	78	63	3	1	32	1.19
17480084--17480131	23	2.1	22	82	17	55	56	4	0	39	1.19
17481248--17481280	17	1.9	17	93	0	57	42	0	3	54	1.15
17481202--17481293	47	1.9	48	91	2	150	36	7	4	51	1.51
17481353--17481381	15	1.9	15	100	0	58	48	0	3	48	1.18
17482792--17482894	41	2.7	39	78	14	99	50	0	2	45	1.23
17483043--17483107	21	3.1	21	70	16	55	55	0	1	43	1.09
17483062--17483118	27	2.2	27	81	9	66	52	0	5	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17484390--17484419	14	2.1	14	93	0	51	80	3	3	13	0.97
17484373--17484425	20	2.8	20	80	11	58	79	3	5	11	1.03
17485706--17485810	34	3.1	34	81	8	124	37	12	17	33	1.87
17491577--17491632	25	2.2	26	78	12	62	39	3	1	55	1.28
17491578--17491632	26	2.2	26	83	9	69	38	3	1	56	1.28
17492789--17492838	25	2.0	26	88	11	77	48	2	0	50	1.12
17492809--17492851	21	2.0	22	82	13	54	48	2	0	48	1.14
17505863--17505911	26	1.9	25	83	4	62	57	4	4	34	1.37
17512221--17512325	29	3.6	30	78	11	94	20	0	31	47	1.51
17512281--17512461	16	11.7	15	73	13	93	18	1	32	47	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121