genome.fa.s79.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  56  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9631304--9637982	723	9.4	711	74	10	3724	41	9	8	40	1.68
9631284--9637968	538	12.5	540	74	10	3638	41	9	8	40	1.68
9634740--9634786	17	2.7	18	77	12	53	40	4	8	46	1.54
9636219--9637961	360	4.8	360	76	5	1318	42	8	8	40	1.66
9636219--9637968	179	9.7	181	75	6	1148	42	8	8	40	1.66
9643888--9644026	73	1.9	73	81	8	167	31	20	18	29	1.96
9647940--9647997	30	1.9	30	96	0	107	43	10	5	41	1.61
9647942--9648006	30	2.2	30	88	2	96	44	9	6	40	1.61
9647970--9648307	177	1.9	177	81	4	405	39	8	7	44	1.64
9648652--9654967	181	35.3	180	75	7	4056	41	10	8	40	1.68
9650068--9650118	17	2.9	18	77	8	52	47	3	3	45	1.40
9648649--9654964	361	17.6	359	76	7	4416	41	10	8	40	1.68
9653847--9654967	180	6.3	169	72	14	539	39	10	8	41	1.70
9653999--9654977	180	5.5	178	78	5	889	39	10	8	41	1.71
9655005--9664294	181	51.9	180	75	7	6335	40	8	9	41	1.68
9655981--9656017	18	2.0	19	89	5	58	45	8	16	29	1.76
9658892--9658942	16	2.9	17	82	11	59	43	7	11	37	1.71
9661047--9661097	18	2.8	20	72	27	60	41	3	13	41	1.63
9664384--9665730	173	7.6	177	75	10	1042	40	7	10	41	1.68
9666068--9666106	19	1.9	20	85	15	53	41	12	12	33	1.82
9665740--9667428	181	9.3	180	77	5	1298	40	7	9	42	1.66
9665743--9667408	361	4.6	361	75	6	1141	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9665998--9667428	542	2.6	539	78	5	1389	40	8	9	42	1.67
9666576--9668170	881	1.8	878	80	4	1956	40	8	10	41	1.69
9668179--9668832	181	3.7	176	77	10	462	42	9	9	38	1.69
9667457--9668832	180	7.7	180	73	11	879	40	8	10	40	1.70
9668790--9668916	42	3.0	42	98	0	245	42	9	9	38	1.70
9669053--9670311	181	7.1	175	72	10	641	40	8	9	40	1.70
9669093--9669977	358	2.5	358	78	7	807	40	8	10	40	1.70
9669089--9674007	359	13.9	353	71	12	924	40	8	9	41	1.68
9670926--9670963	19	2.0	19	89	0	58	39	0	15	44	1.47
9670937--9674013	181	17.1	179	77	7	2420	39	7	9	42	1.68
9670459--9674372	542	7.3	538	77	8	2796	39	7	10	42	1.68
9673686--9674349	337	2.0	335	83	5	842	39	7	10	42	1.68
9674369--9680540	181	34.3	181	74	8	3752	40	8	10	40	1.69
9674369--9680539	361	17.2	360	75	7	3984	40	8	10	40	1.69
9676922--9676965	22	2.0	22	83	12	56	54	4	9	31	1.52
9677500--9677543	16	2.5	18	78	17	56	38	6	13	40	1.71
9680564--9680597	18	2.0	17	88	11	52	44	11	2	41	1.56
9681814--9681859	17	2.7	17	83	9	58	76	2	0	21	0.90
9688194--9688247	24	2.1	26	83	13	67	66	0	22	11	1.22
9689689--9689770	43	1.9	42	87	7	121	39	10	14	35	1.82
9690089--9690322	41	5.7	41	86	2	299	24	14	23	36	1.93
9690086--9690322	83	2.9	81	84	2	330	24	14	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9690245--9690461	42	5.2	42	83	1	231	22	13	19	43	1.86
9691397--9691441	17	2.7	17	83	12	58	77	2	0	20	0.87
9692438--9692470	18	1.9	17	88	11	50	30	6	15	48	1.69
9692421--9692652	120	1.9	120	85	1	322	33	11	8	46	1.71
9692657--9693471	181	4.6	169	79	8	658	44	9	6	39	1.63
9692807--9693582	181	4.3	181	82	3	799	43	9	7	40	1.63
9693445--9693718	136	2.0	136	92	0	458	39	9	9	42	1.69
9693581--9700044	181	35.7	179	72	10	3150	42	9	7	40	1.67
9693317--9693899	312	1.9	312	79	1	671	42	9	7	40	1.67
9693581--9718677	720	34.9	708	69	13	4185	42	9	7	40	1.67
9695628--9695749	61	2.0	60	84	7	158	49	6	5	38	1.53
9695695--9699510	180	21.3	180	73	10	886	42	9	7	40	1.66
9695689--9704244	181	47.0	179	70	12	3067	42	9	7	40	1.66
9695690--9700049	361	12.1	358	74	9	2822	42	10	7	39	1.67
9700172--9701761	182	8.8	181	73	7	558	42	10	6	39	1.66
9700110--9704148	897	4.5	892	74	9	2145	42	9	7	40	1.65
9700110--9718677	361	52.1	353	70	12	4248	42	9	7	40	1.67
9702914--9704171	542	2.3	540	80	4	1404	42	8	7	42	1.61
9705415--9705734	165	2.0	163	80	1	370	45	9	7	38	1.64
9705578--9707609	180	11.4	177	75	10	1166	41	9	8	40	1.67
9707501--9707796	141	2.1	142	79	3	319	40	8	8	41	1.66
9708331--9718677	181	57.7	181	75	6	7006	42	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9707660--9718677	361	30.7	360	75	7	7312	42	10	8	39	1.68
9708979--9709345	174	2.1	180	80	6	410	41	8	7	41	1.63
9709489--9709538	25	2.0	25	81	14	59	58	4	0	38	1.17
9715499--9715531	18	1.9	17	88	11	50	39	6	6	48	1.53
9717097--9717146	18	2.9	17	85	11	66	44	6	2	48	1.39
9716202--9718677	180	13.8	182	75	9	1192	42	9	7	40	1.67
9718907--9722381	180	19.4	178	74	9	2118	40	8	9	41	1.68
9718920--9722381	361	9.7	354	72	10	1370	40	8	9	41	1.68
9721063--9721104	20	2.1	20	86	8	59	50	2	7	40	1.43
9721354--9722317	181	5.4	172	75	12	495	40	7	8	43	1.64
9722693--9722725	18	1.9	17	88	11	50	48	6	6	39	1.53
9722510--9729296	181	38.0	179	74	7	4477	40	8	9	41	1.69
9722510--9729296	361	19.0	360	74	7	4574	40	8	9	41	1.69
9724112--9725240	357	3.2	357	76	7	810	41	8	9	40	1.69
9729228--9729358	67	2.0	67	90	0	208	41	7	16	35	1.76
9729361--9730301	182	5.3	176	74	9	635	37	9	10	42	1.72
9728740--9729885	606	1.9	603	81	4	1378	38	8	11	40	1.72
9730543--9731984	181	8.0	179	75	7	928	41	8	9	40	1.68
9731995--9735811	181	21.3	180	75	6	2485	42	9	8	39	1.68
9732046--9732697	358	1.8	353	80	7	773	42	10	7	39	1.69
9732046--9732743	354	2.0	352	79	8	765	42	10	8	38	1.68
9733020--9735783	358	7.7	357	73	8	928	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9732015--9735778	539	7.0	535	74	8	2204	42	9	8	39	1.68
9736257--9736290	10	3.4	10	83	0	50	82	0	8	8	0.85
9736247--9736291	20	2.2	20	88	7	65	80	2	8	8	1.00
9736252--9736293	20	2.0	21	95	4	77	78	0	11	9	0.96
9736349--9736843	58	8.5	59	88	4	709	36	11	7	43	1.70
9736349--9736843	119	4.2	118	89	4	716	36	11	7	43	1.70
9736879--9736930	5	9.8	5	80	12	59	76	0	5	17	0.97
9736955--9737014	3	19.0	3	83	13	68	70	1	0	28	0.97
9737844--9738003	14	10.8	14	71	19	76	68	3	3	25	1.18
9737898--9737953	13	4.6	12	78	12	53	69	0	1	28	0.98
9737943--9737987	7	6.4	7	83	16	58	77	8	0	13	0.98
9737943--9738009	15	4.5	15	82	16	86	79	5	0	14	0.92
9737936--9738009	8	10.0	7	71	20	53	78	5	0	16	0.93
9738149--9738179	10	2.9	11	95	4	55	0	9	3	87	0.66
9738196--9738417	101	2.2	100	94	0	390	40	18	17	23	1.91
9738333--9738660	45	7.5	44	74	7	249	43	16	14	25	1.86
9738326--9738655	86	3.8	86	76	9	305	43	16	13	25	1.85
9738354--9738605	131	1.9	132	80	7	298	44	17	12	25	1.84
9739691--9739761	6	10.3	7	78	15	69	8	14	0	77	0.98
9739691--9739755	21	3.0	22	82	13	82	7	13	0	78	0.95
9739683--9739762	34	2.4	32	89	6	115	7	16	1	75	1.10
9739691--9739764	21	3.6	20	79	17	80	8	14	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9739717--9739770	28	2.0	27	88	3	81	11	16	0	72	1.12
9749162--9749191	4	7.5	4	100	0	60	76	0	0	23	0.78
9750204--9750535	58	5.8	58	84	8	446	37	12	6	43	1.69
9750258--9750340	27	3.2	27	68	16	84	36	14	8	40	1.76
9750298--9750537	60	4.1	60	88	3	371	35	11	7	45	1.69
9750423--9750514	30	3.1	29	64	32	70	38	13	6	42	1.70
9750298--9750537	118	2.0	119	92	2	403	35	11	7	45	1.69
9750301--9750537	59	4.0	61	86	7	335	36	11	7	44	1.69
9750553--9750601	5	9.4	5	82	8	62	75	0	6	18	1.00
9750633--9750682	3	16.7	3	80	12	50	72	4	0	24	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121