genome.fa.s79.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  94  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15922137--15922163	13	2.1	13	100	0	54	44	7	0	48	1.31
15926784--15926819	2	17.5	2	88	5	54	47	0	5	47	1.25
15933432--15933462	16	1.9	16	93	0	53	16	0	3	80	0.83
15933646--15933683	15	2.5	15	91	0	58	42	2	0	55	1.14
15933568--15933673	22	5.0	21	75	22	96	42	0	0	56	1.05
15933628--15933721	35	2.7	33	83	8	116	46	1	0	52	1.07
15933575--15933721	35	4.5	32	72	18	99	45	0	0	53	1.05
15934561--15934586	13	2.0	13	100	0	52	15	0	0	84	0.62
15934863--15934900	16	2.5	15	84	12	51	21	2	0	76	0.91
15934866--15934898	8	4.1	8	92	0	57	24	3	0	72	0.98
15935343--15935377	4	8.5	4	87	6	52	74	0	2	22	0.95
15935615--15935652	12	3.1	12	82	17	51	0	28	2	68	1.03
15936306--15936394	41	2.2	41	81	2	99	51	13	10	24	1.71
15936336--15936691	43	7.9	43	70	16	195	43	14	13	29	1.83
15936422--15936524	52	2.0	52	86	3	145	43	12	12	31	1.80
15936517--15936691	92	1.9	92	85	0	242	42	14	13	29	1.84
15936526--15936691	44	3.7	44	74	6	170	42	15	13	28	1.85
15937752--15937817	27	2.6	25	81	13	80	9	9	0	81	0.87
15937752--15937816	9	7.4	9	80	16	66	7	9	0	83	0.82
15939321--15939347	14	1.9	14	100	0	54	29	22	3	44	1.70
15943661--15943699	18	2.2	18	85	0	51	28	5	12	53	1.60
15944316--15944355	20	1.9	20	85	10	53	75	5	10	10	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15946495--15946537	19	2.5	17	82	14	52	41	0	2	55	1.12
15947940--15948221	132	2.1	133	88	1	413	45	6	7	40	1.58
15951988--15952020	17	1.9	17	88	11	50	48	3	3	45	1.33
15952424--15952457	18	1.9	18	88	5	52	41	0	8	50	1.34
15953989--15954022	16	2.1	17	88	5	52	50	0	0	50	1.00
15954074--15954130	27	2.1	27	96	0	105	52	0	3	43	1.18
15954084--15954143	27	2.2	26	85	11	77	58	1	3	36	1.25
15958938--15958978	20	2.2	18	86	8	55	51	4	4	39	1.45
15959901--15959931	15	2.0	16	93	6	55	41	6	12	38	1.69
15962072--15962137	31	2.1	31	91	0	105	43	3	21	31	1.67
15964901--15964939	20	1.9	21	89	5	62	71	2	7	17	1.21
15965182--15965217	11	3.4	11	88	7	56	0	2	16	80	0.83
15965183--15965220	5	7.4	5	88	5	58	0	2	18	78	0.86
15965543--15965734	40	4.8	40	78	10	155	35	9	15	39	1.79
15965543--15965702	42	4.0	39	79	11	132	35	8	15	40	1.79
15965543--15965693	82	1.9	81	83	6	198	34	8	16	40	1.79
15965795--15965838	23	1.9	23	86	9	63	20	15	6	56	1.62
15967632--15967705	34	2.1	34	83	11	89	9	22	1	66	1.29
15967632--15967731	36	2.9	34	78	14	82	8	23	1	68	1.22
15967667--15967819	43	3.5	43	76	13	120	5	20	1	71	1.16
15968340--15968412	22	3.2	23	73	15	62	4	17	0	78	0.91
15968339--15968379	21	2.0	21	95	0	73	9	19	0	70	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15968375--15968413	18	2.2	17	95	4	69	0	15	0	84	0.62
15968344--15968425	30	2.7	31	76	10	73	4	18	1	75	1.04
15970493--15970611	3	39.3	3	84	8	152	32	4	0	62	1.20
15971538--15971575	18	2.2	18	95	4	69	60	7	0	31	1.25
15971648--15971690	17	2.6	17	77	3	52	60	9	0	30	1.28
15982113--15982232	45	2.7	44	84	7	145	53	14	14	18	1.73
15984127--15984151	9	2.8	9	100	0	50	80	0	0	20	0.72
15984754--15984855	39	2.5	40	81	9	109	69	0	3	25	1.12
15984733--15984843	18	5.9	19	74	22	76	68	1	6	23	1.22
15984742--15984862	50	2.5	50	79	12	135	69	0	4	24	1.14
15984754--15984871	5	22.4	5	69	20	57	70	0	3	25	1.08
15984754--15984871	11	11.2	10	72	22	57	70	0	3	25	1.08
15985644--15985690	23	2.1	22	84	11	60	27	4	2	65	1.22
15986188--15986246	28	2.1	28	90	0	91	22	11	5	61	1.50
15986924--15986965	21	2.0	21	95	0	75	35	14	11	38	1.83
15987284--15987323	2	20.0	2	100	0	80	50	0	0	50	1.00
15988524--15988549	13	2.0	13	100	0	52	46	7	0	46	1.31
15995459--15995487	2	14.5	2	100	0	58	48	0	0	51	1.00
15997531--15997581	2	25.5	2	95	0	93	50	0	49	0	1.00
16004160--16004190	11	2.8	11	90	0	53	29	19	6	45	1.75
16006564--16006618	15	3.7	15	81	15	53	9	3	10	76	1.13
16006576--16006619	15	2.8	16	86	10	56	13	4	9	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16007780--16008162	166	2.3	164	82	4	430	36	18	12	33	1.87
16008546--16008574	6	4.8	6	100	0	58	65	17	0	17	1.27
16010132--16010173	22	1.9	22	85	0	57	4	11	2	80	0.95
16010130--16010173	23	2.0	23	86	4	63	4	13	2	79	0.98
16015981--16016017	13	2.8	13	83	0	56	0	0	16	83	0.64
16016060--16016138	7	11.0	7	74	12	63	1	2	16	79	0.90
16016099--16016137	1	39.0	1	84	0	51	0	0	7	92	0.39
16021169--16021357	31	6.1	31	71	6	105	31	16	18	33	1.94
16021119--16021357	62	3.9	62	74	8	218	31	15	18	34	1.93
16021418--16021567	49	3.0	48	74	8	149	29	10	18	41	1.84
16021629--16021657	3	9.7	3	100	0	58	65	0	0	34	0.93
16021629--16021707	22	4.0	20	75	13	74	63	0	0	36	0.95
16021683--16021749	9	7.1	9	77	5	62	80	2	2	13	0.94
16023218--16023287	16	4.2	16	87	8	79	52	25	0	21	1.47
16034652--16034716	9	7.7	9	88	10	93	80	0	0	20	0.72
16034643--16034717	9	8.9	8	81	8	78	81	0	1	17	0.76
16035941--16036181	35	6.7	36	67	14	122	19	20	15	44	1.86
16035843--16036121	142	2.0	141	84	2	371	19	22	16	42	1.89
16035799--16036187	73	5.4	73	81	4	396	19	20	15	44	1.87
16036016--16036154	39	3.7	38	75	6	131	20	17	15	46	1.84
16035940--16036533	34	17.2	34	67	10	177	21	19	13	45	1.84
16036162--16036587	101	4.2	102	83	2	536	21	19	13	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16036172--16036595	203	2.1	203	91	0	688	21	19	13	45	1.84
16036922--16037006	20	4.0	21	76	16	61	54	0	0	45	1.00
16036929--16036966	18	2.1	19	90	5	60	47	0	0	52	1.00
16036937--16037002	22	3.3	18	79	16	60	54	0	0	45	0.99
16037078--16037124	22	2.0	24	84	8	62	27	53	10	8	1.64
16038516--16038571	17	3.4	16	80	11	60	50	28	1	19	1.58
16038548--16038582	16	2.1	17	94	5	63	45	28	0	25	1.54
16044907--16048893	797	5.0	797	97	0	7546	36	13	12	37	1.83
16049128--16049308	95	1.9	95	82	8	226	39	8	11	40	1.72
16050516--16050664	22	6.6	23	66	9	74	36	16	16	31	1.90
16056406--16056435	14	2.1	14	93	0	51	40	0	0	60	0.97
16057814--16057863	26	2.0	25	84	4	64	52	4	8	36	1.50
16059345--16059396	13	4.2	13	75	7	54	46	0	0	53	1.00
16068472--16068496	4	6.2	4	100	0	50	76	0	0	24	0.80
16068466--16068508	22	2.0	22	85	0	59	74	4	0	20	1.00
16079454--16079492	19	2.0	21	85	10	55	23	5	5	66	1.32
16080162--16080229	26	2.6	25	80	15	84	75	11	0	13	1.06
16080426--16080455	15	2.0	15	100	0	60	33	26	6	33	1.83
16081352--16081476	40	3.1	40	87	5	146	44	13	12	30	1.80
16081801--16081900	41	2.5	39	76	9	103	47	11	11	31	1.74
16086199--16086241	19	2.3	19	84	8	52	53	0	20	25	1.46
16093825--16093850	12	2.2	12	100	0	52	15	0	7	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16094317--16094371	22	2.6	21	78	18	69	76	12	0	10	1.02
16094312--16094391	26	3.2	25	74	22	71	76	11	1	11	1.09
16095335--16095379	22	2.0	24	86	8	67	28	2	0	68	1.01
16096999--16097059	26	2.4	25	84	13	72	50	0	9	39	1.35
16099353--16099666	101	3.2	97	79	10	339	37	11	8	42	1.71
16107766--16107912	73	2.0	73	84	3	190	60	6	15	17	1.56
16107784--16107935	73	2.1	71	81	7	171	63	6	13	16	1.50
16108153--16108329	65	2.8	64	81	5	211	29	12	19	38	1.88
16108103--16108253	29	5.0	29	73	17	92	33	13	17	35	1.89
16108157--16108329	64	2.7	63	81	7	194	30	12	19	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121