genome.fa.s79.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  42  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7384441--7384477	9	3.9	10	82	10	51	81	0	2	16	0.81
7387792--7387834	18	2.4	18	80	3	52	67	6	16	9	1.40
7389381--7389422	17	2.5	17	80	0	57	76	2	9	11	1.12
7391709--7392014	84	3.7	84	78	2	294	27	15	17	39	1.90
7391923--7391964	21	2.0	21	81	9	50	28	9	19	42	1.82
7391723--7392092	167	2.2	167	79	3	370	28	15	17	38	1.90
7392159--7392212	27	2.0	27	88	0	81	25	5	14	53	1.63
7392236--7392285	8	5.9	8	81	11	55	84	10	2	4	0.84
7392247--7392308	9	6.6	10	79	18	62	83	4	3	8	0.88
7392247--7392322	18	4.0	18	81	11	80	82	3	2	10	0.89
7392253--7392322	10	7.3	9	79	12	70	82	2	2	11	0.88
7393949--7393991	19	2.3	18	80	4	59	72	0	13	13	1.13
7394438--7394464	9	3.0	9	100	0	54	77	0	0	22	0.76
7400935--7401013	40	2.0	39	80	14	90	41	10	5	43	1.60
7400870--7402133	129	9.7	129	76	7	717	45	9	7	38	1.65
7401370--7402106	261	2.8	251	76	9	660	43	10	8	37	1.69
7401122--7402093	131	7.5	125	76	10	545	44	10	7	38	1.66
7403893--7403934	10	4.6	9	80	14	50	57	0	2	40	1.12
7415087--7415115	14	2.1	14	100	0	58	6	13	0	79	0.93
7415214--7415261	3	16.0	3	100	0	96	66	0	0	33	0.92
7421093--7421142	23	2.2	23	96	0	91	34	6	12	48	1.65
7423497--7423768	98	2.7	100	81	5	311	51	9	9	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7425541--7425573	17	1.9	17	88	11	50	51	0	0	48	1.00
7426915--7426945	16	1.9	16	100	0	62	77	0	9	12	0.99
7428952--7429084	51	2.5	51	80	11	128	41	13	1	43	1.53
7429627--7429930	129	2.4	127	83	6	382	44	12	4	39	1.61
7446602--7446643	13	2.9	14	77	19	50	52	2	0	45	1.13
7446933--7446976	18	2.4	19	84	7	63	54	4	4	36	1.41
7447551--7447636	31	2.7	31	81	3	100	37	8	15	39	1.77
7448089--7448114	3	8.7	3	100	0	52	69	0	0	30	0.89
7452194--7452238	17	2.6	17	82	10	56	33	44	4	17	1.69
7452310--7452360	17	3.0	17	91	5	77	41	37	3	17	1.68
7452395--7452481	31	2.9	30	83	6	104	39	32	1	27	1.64
7452411--7452517	49	2.1	50	83	6	137	40	33	0	26	1.56
7452448--7452487	18	2.2	18	86	0	53	42	30	0	27	1.56
7461591--7461637	3	15.7	3	100	0	94	68	0	0	31	0.90
7461843--7461875	9	3.3	10	87	12	50	72	0	0	27	0.85
7461843--7461874	6	4.9	7	92	7	50	71	0	0	28	0.86
7462063--7462112	21	2.3	21	86	3	64	50	0	2	48	1.12
7462076--7462124	21	2.3	21	82	6	64	44	0	4	51	1.20
7463793--7463825	16	2.1	16	88	5	50	21	3	3	72	1.11
7464691--7464746	20	2.8	20	79	17	62	57	1	10	30	1.43
7469572--7469596	2	12.5	2	100	0	50	52	0	0	48	1.00
7477199--7477257	26	2.3	26	91	8	95	47	6	11	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7477436--7477463	1	28.0	1	100	0	56	100	0	0	0	0.00
7481964--7482017	17	3.4	17	77	10	51	61	1	24	12	1.42
7483687--7483711	5	5.0	5	100	0	50	80	0	0	20	0.72
7486397--7486432	17	2.2	16	90	5	54	80	16	0	2	0.83
7493903--7494225	13	26.8	12	66	23	105	54	3	0	41	1.20
7493958--7494191	56	4.3	57	79	16	241	52	2	0	43	1.22
7493916--7494198	18	17.2	16	72	19	169	54	2	0	42	1.20
7493916--7494191	15	17.7	15	72	16	181	53	2	0	42	1.20
7494167--7494229	23	2.7	23	80	7	65	61	1	0	36	1.05
7494006--7494295	147	2.0	147	79	13	312	51	2	1	44	1.22
7494259--7494344	33	2.5	33	81	11	100	47	0	0	52	1.00
7494259--7494362	37	2.9	34	77	18	95	47	0	1	50	1.12
7498456--7498500	11	3.9	11	86	11	63	68	0	2	28	1.01
7499602--7499631	7	4.3	7	100	0	60	30	26	0	43	1.55
7500924--7500957	2	17.0	2	100	0	68	50	0	0	50	1.00
7502215--7502248	16	2.1	16	88	0	50	14	11	38	35	1.83
7503245--7503335	30	3.1	30	76	13	91	72	6	1	19	1.13
7503297--7503333	17	2.2	17	90	9	58	75	5	0	18	0.99
7504126--7504188	3	21.0	3	78	18	69	65	3	1	30	1.18
7504169--7504221	13	3.9	13	78	9	52	58	9	0	32	1.30
7504174--7504235	28	2.2	28	79	0	70	51	9	1	37	1.45
7504183--7504253	10	7.3	10	71	10	58	47	11	1	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7504131--7504217	33	2.6	34	85	9	115	60	6	1	31	1.30
7504456--7504542	30	2.7	31	75	19	81	43	11	21	22	1.85
7504674--7504952	55	4.9	55	71	12	193	41	12	22	22	1.87
7504606--7505178	176	3.3	176	79	6	479	45	12	20	21	1.83
7505510--7505543	16	2.1	16	88	0	50	17	20	5	55	1.62
7505947--7505983	14	2.7	13	88	12	56	8	5	2	83	0.88
7506275--7506321	16	3.0	15	79	11	58	8	8	0	82	0.83
7509935--7509960	6	4.3	6	100	0	52	15	0	0	84	0.62
7510034--7510099	28	2.4	27	78	12	71	68	4	4	22	1.27
7510929--7510999	10	7.3	10	71	10	58	49	9	1	39	1.45
7510878--7510963	33	2.6	34	77	7	86	61	6	0	31	1.22
7512690--7512737	11	4.1	12	82	12	64	18	0	2	79	0.84
7512692--7512740	23	2.1	24	88	11	75	20	0	2	77	0.87
7512845--7512902	26	2.2	25	85	8	80	31	5	1	62	1.27
7512857--7512906	14	3.5	14	81	10	57	28	4	2	66	1.21
7513534--7513570	14	2.4	16	82	13	51	59	0	40	0	0.97
7513865--7513961	6	16.5	6	71	16	69	14	5	2	78	1.01
7513865--7513961	17	5.6	16	75	15	77	14	5	2	78	1.01
7513865--7513961	5	18.8	5	73	20	60	14	5	2	78	1.01
7513977--7514194	117	1.9	117	87	5	325	45	5	14	33	1.69
7513978--7514192	59	3.7	58	78	7	220	46	5	14	33	1.69
7515387--7515480	47	2.0	47	93	0	161	32	17	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7524640--7524691	8	6.4	8	85	10	61	84	3	1	9	0.82
7524641--7524697	26	2.2	26	87	0	78	84	3	3	8	0.86
7525705--7526048	42	8.0	41	81	7	321	25	15	19	39	1.91
7525705--7526048	86	4.0	85	81	3	359	25	15	19	39	1.91
7525705--7526048	44	7.9	44	81	8	325	25	15	19	39	1.91
7526237--7526318	7	11.4	7	79	14	55	24	3	2	69	1.17
7526282--7526318	13	2.6	15	91	8	60	29	5	0	64	1.15
7526369--7526415	14	3.2	14	87	6	58	34	4	0	61	1.15
7527347--7527404	21	2.7	21	86	5	71	12	5	0	82	0.82
7527341--7527442	30	3.5	30	83	12	115	13	6	0	78	1.00
7527366--7527441	35	2.1	36	83	9	93	13	5	1	80	0.95
7527365--7527441	12	6.3	13	73	18	51	12	5	1	80	0.94
7527478--7527679	58	3.4	57	73	11	201	45	6	12	34	1.69
7527438--7527679	120	2.0	119	85	7	332	45	7	12	34	1.69
7532180--7532281	24	4.2	24	78	17	120	57	8	6	26	1.54
7532832--7532874	18	2.5	17	81	7	59	65	4	0	30	1.13
7533152--7533263	55	2.0	55	91	0	179	50	12	16	20	1.78
7534981--7535027	20	2.5	19	86	10	69	10	2	10	76	1.10
7535871--7535937	31	2.2	30	80	12	75	73	0	2	23	0.97
7535967--7536005	18	2.2	18	86	4	53	56	5	0	38	1.22
7537906--7538164	91	2.8	89	75	8	243	44	16	13	25	1.85
7538104--7538351	134	1.8	133	80	6	295	45	15	13	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7538542--7538606	3	21.7	3	87	0	94	33	0	32	33	1.58
7538599--7538671	3	24.7	3	94	2	130	64	0	1	34	1.02
7541278--7541370	45	2.1	45	95	0	168	26	25	5	41	1.77
7544769--7544815	14	3.4	13	83	13	58	25	4	0	70	1.05
7547256--7547404	81	1.8	81	82	0	190	34	11	16	38	1.84
7547256--7547436	40	4.4	40	76	5	141	33	11	17	38	1.85
7547255--7547524	41	6.6	40	70	14	133	33	10	15	40	1.81
7547336--7547522	40	4.6	38	72	16	110	35	9	13	41	1.77
7547337--7547639	41	7.4	40	69	9	116	34	10	14	40	1.80
7547463--7547623	82	2.0	82	80	7	184	34	10	14	40	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121