genome.fa.s79.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  60  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10212084--10212116	11	3.0	11	100	0	66	18	27	36	18	1.94
10211239--10213574	908	2.6	903	87	2	3329	26	24	23	25	2.00
10213596--10213648	26	2.0	26	88	0	79	28	26	15	30	1.96
10214324--10214376	26	2.0	26	96	0	97	26	26	18	28	1.98
10212791--10215031	728	3.1	721	86	6	3046	26	24	22	26	2.00
10215221--10215273	26	2.0	26	92	0	88	30	24	18	26	1.98
10216115--10216171	26	2.1	27	87	3	80	31	24	15	28	1.96
10214313--10218659	901	4.9	896	85	3	5481	26	24	23	25	2.00
10217019--10217071	26	2.0	26	100	0	106	30	26	16	26	1.97
10217890--10219956	692	3.0	680	85	5	2667	26	23	23	26	2.00
10221069--10221118	26	1.9	26	91	0	82	26	24	18	32	1.97
10219296--10221847	900	2.8	897	88	1	3792	25	24	24	25	2.00
10221095--10222469	718	1.9	716	89	1	2146	28	22	23	26	1.99
10224073--10224125	26	2.0	26	92	0	88	28	24	18	28	1.98
10224847--10226835	709	2.8	707	88	3	2925	27	23	22	26	2.00
10227606--10227658	26	2.0	26	92	0	88	22	26	20	30	1.98
10229385--10229437	26	2.0	26	96	0	97	32	26	15	26	1.95
10230287--10230339	26	2.0	26	88	0	79	26	28	18	26	1.98
10226842--10232813	893	6.7	899	85	5	7654	25	24	23	25	2.00
10232042--10232094	26	2.0	26	100	0	106	26	26	20	26	1.99
10234597--10234675	26	3.0	26	92	0	131	27	24	20	27	1.99
10232914--10237190	903	4.7	901	85	4	5532	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10236427--10236479	26	2.0	26	92	0	88	28	24	18	28	1.98
10237835--10237864	8	3.8	8	95	0	51	6	66	26	0	1.16
10238906--10238958	26	2.0	26	85	0	70	26	22	20	30	1.98
10238748--10239165	185	2.3	184	85	2	536	22	27	27	22	1.99
10239091--10239143	26	2.0	26	96	0	97	28	26	18	26	1.98
10245601--10245653	26	2.0	26	100	0	106	26	26	20	26	1.99
10244736--10247250	885	2.8	880	84	5	3229	26	24	23	25	2.00
10248833--10248885	26	2.0	26	92	0	88	28	24	18	28	1.98
10249730--10249782	26	2.0	26	92	0	88	28	22	20	28	1.99
10247963--10252859	901	5.4	897	88	2	6784	25	25	24	25	2.00
10250629--10250681	26	2.0	26	92	0	88	28	24	18	28	1.98
10247963--10252859	899	5.4	897	88	2	6759	25	25	24	25	2.00
10251532--10251584	26	2.0	26	92	0	88	28	24	18	28	1.98
10252436--10252485	26	1.9	26	91	0	82	24	24	24	28	2.00
10255888--10255940	26	2.0	26	89	7	81	26	18	26	28	1.98
10255297--10256105	426	1.9	412	80	6	928	22	29	27	20	1.98
10262202--10262254	26	2.0	26	96	0	97	26	18	26	28	1.98
10260326--10263108	898	3.1	890	87	3	3821	25	24	24	25	2.00
10266902--10266954	26	2.0	26	88	0	79	28	16	24	30	1.97
10267788--10267840	26	2.0	26	96	0	97	28	20	24	26	1.99
10266183--10271421	900	5.8	898	86	3	7000	25	23	24	25	2.00
10268691--10268741	26	2.0	26	92	0	84	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10269578--10269628	26	2.0	26	96	0	93	27	19	25	27	1.99
10271566--10271618	26	2.0	26	85	0	70	28	22	18	30	1.98
10273317--10273366	26	1.9	26	91	0	82	28	18	24	30	1.97
10273709--10273756	25	1.9	25	82	0	60	22	8	12	56	1.63
10274177--10274229	26	2.0	26	96	0	97	26	18	26	28	1.98
10275062--10275112	26	2.0	26	96	0	93	29	21	25	23	1.99
10271496--10276907	893	6.2	885	83	7	5965	25	23	24	25	2.00
10275954--10276006	26	2.0	26	96	0	97	26	18	26	28	1.98
10276825--10276877	26	2.0	26	85	0	70	28	18	20	32	1.97
10277548--10277600	26	2.0	26	96	0	97	26	18	26	28	1.98
10278453--10278505	26	2.0	26	88	0	79	28	20	24	26	1.99
10276851--10281227	897	4.9	887	87	4	5868	25	24	24	25	2.00
10279344--10279396	26	2.0	26	96	0	97	28	20	24	26	1.99
10280246--10280296	26	2.0	26	96	0	93	29	13	27	29	1.94
10281144--10281194	26	2.0	26	92	0	84	33	19	23	23	1.97
10281888--10281940	26	2.0	26	96	0	97	28	18	26	26	1.98
10282776--10282828	26	2.0	26	96	0	97	28	20	24	26	1.99
10284583--10284633	26	2.0	26	92	0	84	31	19	25	23	1.98
10281170--10285503	901	4.8	897	86	3	5911	25	23	24	25	2.00
10286176--10286227	26	2.0	25	85	3	68	23	19	30	26	1.98
10288643--10288695	26	2.0	26	96	0	97	26	15	26	32	1.95
10289547--10289597	26	2.0	26	96	0	93	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10287904--10291358	895	3.8	901	89	2	5055	25	23	25	25	2.00
10290437--10290489	26	2.0	26	88	0	79	28	15	26	30	1.96
10290601--10292677	718	2.9	716	89	1	3137	25	23	24	26	2.00
10293078--10293130	26	2.0	26	96	0	97	26	18	26	28	1.98
10292680--10297749	903	5.7	894	84	5	6044	25	24	25	25	2.00
10294838--10294890	26	2.0	26	92	0	88	28	18	24	28	1.98
10297545--10297597	26	2.0	26	100	0	106	26	16	26	30	1.97
10297730--10297782	26	2.0	26	96	0	97	28	20	24	26	1.99
10297518--10297941	185	2.3	185	84	2	555	22	27	27	22	1.99
10297886--10305903	896	9.1	869	80	9	7895	25	23	24	25	2.00
10299716--10299765	26	1.9	26	95	0	91	30	20	24	26	1.98
10301471--10301523	26	2.0	26	92	0	88	28	22	24	24	2.00
10302357--10302409	26	2.0	26	96	0	97	26	18	26	28	1.98
10303255--10303307	26	2.0	26	88	0	79	24	16	28	30	1.97
10304151--10304204	26	2.1	26	86	3	74	24	18	27	29	1.98
10307103--10307154	26	2.0	26	100	0	104	26	19	26	26	1.99
10307970--10309568	818	1.9	823	86	4	2263	25	22	24	28	2.00
10310415--10310467	26	2.0	26	92	0	88	28	18	24	28	1.98
10308749--10329137	898	22.8	890	82	7	22023	25	24	24	25	2.00
10312219--10312271	26	2.0	26	96	0	97	28	20	24	26	1.99
10313112--10313164	26	2.0	26	88	0	79	26	15	28	30	1.96
10315773--10315830	26	2.2	27	96	3	109	25	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10315784--10315842	26	2.2	26	81	3	64	30	22	22	25	1.99
10316675--10316753	26	3.0	26	96	0	140	26	20	25	27	1.99
10317603--10317655	26	2.0	26	96	0	97	28	20	26	24	1.99
10319389--10319441	26	2.0	26	96	0	97	26	22	24	26	2.00
10321152--10321204	26	2.0	26	88	0	79	28	20	24	26	1.99
10322954--10323006	26	2.0	26	92	0	88	28	18	26	26	1.98
10324024--10324075	25	2.1	25	100	0	104	42	25	17	15	1.88
10325636--10325686	26	2.0	26	92	0	84	27	17	25	29	1.98
10326522--10326573	25	2.0	26	96	3	97	26	17	26	28	1.97
10324080--10329188	908	5.7	903	87	4	6694	24	23	24	26	2.00
10328412--10329963	776	2.0	776	84	3	2034	24	23	25	27	2.00
10330667--10330720	26	2.0	27	85	3	74	29	20	25	24	1.99
10331567--10331619	26	2.0	26	92	0	88	28	22	22	26	1.99
10331993--10332045	26	2.0	26	85	0	70	22	11	15	50	1.75
10333376--10333425	26	1.9	26	100	0	100	28	20	26	26	1.99
10330283--10336113	900	6.5	896	85	5	7018	25	24	24	25	2.00
10334268--10334320	26	2.0	26	96	0	97	28	16	24	30	1.97
10335183--10335235	26	2.0	26	100	0	106	26	20	26	26	1.99
10337651--10337702	26	2.0	26	88	0	77	30	17	23	28	1.97
10340533--10340584	25	2.0	26	96	3	97	26	21	26	25	1.99
10338992--10341312	882	2.6	877	86	3	3199	26	23	23	26	2.00
10340785--10341839	528	2.0	530	91	0	1693	27	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10341950--10342002	26	2.0	26	88	0	79	30	18	22	28	1.98
10343566--10343618	26	2.0	26	89	7	81	28	20	26	24	1.99
10342819--10346278	896	3.9	893	87	3	4767	25	24	24	26	2.00
10348011--10349493	711	2.1	705	87	3	2150	26	23	23	26	2.00
10350898--10350923	11	2.4	11	100	0	52	15	42	23	19	1.89
10349565--10351745	709	3.1	697	85	4	2903	26	22	24	26	2.00
10352504--10352556	26	2.0	26	88	0	79	30	18	22	28	1.98
10353407--10353459	26	2.0	26	96	0	97	26	18	28	26	1.98
10352092--10358865	899	7.5	897	84	5	8246	25	24	24	25	2.00
10354307--10354385	26	3.0	26	96	0	149	27	20	25	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121