genome.fa.s79.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  81  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13857332--13857373	17	2.5	17	85	11	52	78	2	16	2	0.96
13857371--13857397	4	6.8	4	100	0	54	77	0	0	22	0.76
13857864--13857888	13	1.9	13	100	0	50	20	0	0	80	0.72
13864071--13864262	96	2.0	96	94	2	341	38	8	14	38	1.78
13864271--13864306	17	2.1	17	100	0	72	22	11	25	41	1.86
13873168--13873211	16	2.8	16	80	16	56	56	0	0	43	0.99
13873164--13873211	7	6.6	7	80	15	53	56	0	0	43	0.99
13873169--13873215	23	2.0	24	84	12	62	57	0	0	42	0.98
13873164--13873247	30	2.9	30	74	10	75	53	0	1	45	1.08
13875387--13875420	17	1.9	18	88	5	52	8	29	0	61	1.26
13876785--13876828	15	3.0	15	83	6	54	61	11	2	25	1.41
13878322--13878380	5	10.8	5	80	12	55	28	0	0	71	0.87
13878320--13878386	22	3.0	22	79	18	77	31	0	0	68	0.90
13878323--13878377	27	2.0	27	85	7	74	29	0	0	70	0.87
13878324--13878380	12	5.0	12	81	14	52	29	0	0	70	0.88
13881283--13881342	19	3.2	19	76	4	59	43	30	6	20	1.77
13881283--13881361	38	2.1	38	86	9	108	43	31	6	18	1.76
13881290--13881363	19	3.9	19	75	16	64	41	32	6	18	1.77
13881408--13881444	19	1.9	19	88	0	56	51	27	0	21	1.48
13881468--13881561	19	5.0	18	77	12	82	36	35	9	19	1.84
13881468--13881569	37	2.7	39	76	8	113	36	34	8	20	1.84
13881482--13881569	19	4.7	19	82	2	106	36	34	9	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13881556--13881621	18	3.6	18	74	12	62	48	31	3	16	1.62
13881599--13881697	43	2.3	42	81	10	110	50	28	2	19	1.58
13881669--13881718	26	2.0	25	88	4	73	52	28	2	18	1.56
13881707--13881740	12	2.8	12	90	4	50	52	35	0	11	1.38
13882795--13882819	13	1.9	13	100	0	50	24	24	4	48	1.68
13882845--13882875	16	1.9	16	93	0	53	54	16	25	3	1.56
13882915--13882939	13	1.9	13	100	0	50	24	24	4	48	1.68
13882963--13883019	14	4.1	14	88	0	51	52	10	36	0	1.36
13882963--13882993	16	1.9	16	93	0	53	54	19	25	0	1.44
13882985--13883026	2	21.0	2	100	0	84	50	0	50	0	1.00
13882757--13882995	120	2.0	120	97	1	455	44	14	13	27	1.83
13887924--13887978	28	2.0	28	96	0	101	45	1	0	52	1.11
13889776--13889808	2	16.5	2	100	0	66	51	0	0	48	1.00
13890817--13890873	30	1.9	30	96	0	105	63	10	0	26	1.27
13890822--13890873	13	3.7	13	74	18	50	65	9	0	25	1.23
13890839--13890874	18	2.1	17	89	5	54	66	8	0	25	1.19
13892108--13892381	44	6.2	44	75	9	197	45	15	10	29	1.79
13892059--13892343	44	6.5	45	74	9	171	44	14	9	30	1.78
13892869--13892939	21	3.3	21	71	7	61	39	14	14	32	1.85
13893266--13893431	22	7.5	22	71	2	109	33	18	18	30	1.95
13893192--13893377	66	2.8	66	82	1	194	34	15	15	33	1.90
13893197--13893374	88	2.0	88	81	4	207	35	15	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13893276--13893431	66	2.4	66	77	0	159	32	18	18	30	1.95
13898473--13898515	22	2.0	22	82	17	54	65	9	6	18	1.44
13899121--13899146	13	2.0	13	100	0	52	61	23	0	15	1.33
13899117--13899173	30	1.9	30	92	0	96	61	15	0	22	1.34
13899117--13899163	17	3.0	17	79	17	57	61	17	0	21	1.34
13899122--13899173	13	3.7	13	74	18	50	63	15	0	21	1.31
13902701--13903070	141	2.6	141	83	6	437	42	8	4	43	1.56
13904227--13904257	3	10.7	3	93	6	55	0	29	0	70	0.87
13907070--13907449	206	1.8	203	83	7	498	32	14	7	44	1.74
13907658--13907715	14	3.9	15	80	10	75	0	22	44	32	1.53
13907653--13907717	19	3.8	19	68	31	65	0	23	43	33	1.54
13907623--13907712	30	3.0	30	93	0	144	3	24	41	31	1.71
13908513--13908562	12	4.4	11	77	7	55	6	14	58	22	1.58
13908599--13908646	21	2.2	22	92	3	80	6	4	12	77	1.11
13908765--13908795	12	2.6	12	94	0	53	6	0	3	90	0.55
13913442--13913843	59	6.7	57	85	11	497	32	14	7	44	1.75
13913921--13913988	27	2.6	26	82	17	72	79	2	2	14	0.97
13915239--13915343	1	105.0	1	84	0	129	0	0	8	91	0.42
13915350--13915878	121	4.3	123	94	4	930	37	21	17	22	1.94
13915350--13915878	41	13.0	39	90	7	799	37	21	17	22	1.94
13917108--13917159	24	2.2	24	92	0	86	3	15	0	80	0.85
13917097--13917165	31	2.4	28	85	11	86	4	14	0	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13917124--13917172	10	5.1	10	80	9	66	2	10	0	87	0.62
13921027--13921436	59	6.9	58	87	7	540	33	13	7	45	1.71
13921027--13921446	120	3.5	119	91	3	648	33	12	7	46	1.70
13921505--13921574	28	2.7	26	80	12	72	78	2	2	15	0.99
13921886--13921923	20	1.9	20	100	0	76	26	18	26	28	1.98
13921887--13921931	20	2.3	20	92	3	74	28	22	24	24	1.99
13921986--13922054	31	2.2	31	84	0	84	27	23	24	24	2.00
13922492--13922617	55	2.3	50	74	21	112	66	4	1	26	1.20
13931791--13931982	64	3.0	64	93	0	339	24	15	27	33	1.95
13933255--13933288	18	1.9	18	88	5	52	38	0	0	61	0.96
13934737--13934783	14	2.8	18	69	24	57	48	6	4	40	1.48
13934723--13934783	32	1.9	32	93	0	104	45	6	3	44	1.46
13935034--13935096	29	2.2	29	85	5	83	30	6	1	61	1.30
13936204--13936269	29	2.3	28	82	10	80	59	3	9	28	1.43
13936497--13936533	3	12.3	3	100	0	74	64	0	0	35	0.94
13937323--13937645	162	2.0	162	98	0	619	39	11	18	30	1.86
13939074--13939118	21	2.1	22	83	4	56	26	2	4	66	1.22
13940240--13940319	36	2.2	38	84	10	114	37	0	2	60	1.11
13942540--13942569	15	2.1	15	93	6	53	83	10	0	6	0.81
13943875--13943941	3	21.7	3	77	17	66	65	1	1	31	1.10
13943865--13943945	25	3.2	24	80	14	85	64	1	1	33	1.10
13943881--13943941	19	3.3	19	80	8	63	65	1	1	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13943873--13943935	22	3.0	22	77	13	69	65	1	1	31	1.12
13943877--13943941	28	2.5	25	87	7	85	64	1	1	32	1.12
13944089--13944143	14	3.7	14	72	13	56	52	23	3	20	1.62
13944259--13944306	14	3.4	14	81	16	55	54	20	0	25	1.45
13947242--13947279	18	2.1	18	85	9	51	13	7	34	44	1.72
13948704--13948996	41	7.2	41	73	6	202	37	13	13	34	1.85
13950843--13950903	19	3.2	19	72	21	56	9	11	1	77	1.07
13952131--13952175	18	2.6	18	83	16	60	0	13	0	86	0.57
13952131--13952175	17	2.7	16	86	6	63	0	13	0	86	0.57
13954939--13954981	20	2.2	19	84	12	52	27	2	0	69	1.00
13955015--13955075	4	15.0	4	73	10	52	70	6	1	21	1.19
13956459--13956733	141	2.0	134	89	4	415	42	14	10	32	1.79
13957168--13957277	42	2.6	41	81	4	130	41	22	11	23	1.87
13957254--13957399	78	1.9	77	82	4	186	39	17	13	30	1.88
13958904--13959500	300	2.0	300	86	3	846	37	13	15	32	1.87
13959622--13959661	21	1.9	21	89	0	62	40	5	30	25	1.77
13961499--13961666	82	2.0	82	85	2	221	25	14	23	36	1.93
13966664--13966730	14	4.9	14	74	15	52	7	16	0	76	1.01
13966661--13966716	17	3.4	17	79	16	57	7	14	0	78	0.95
13966684--13966730	8	5.8	9	74	20	50	6	17	0	76	0.98
13966661--13966721	32	1.9	31	83	9	79	6	14	0	78	0.94
13966683--13966730	23	2.1	22	88	11	71	6	16	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13968871--13968914	20	2.1	21	83	4	54	47	2	4	45	1.35
13974843--13974873	14	2.1	15	94	5	55	58	0	0	41	0.98
13976391--13976420	15	2.1	15	93	6	53	56	0	0	43	0.99
13976566--13976735	84	2.0	84	100	0	340	38	18	8	34	1.81
13980869--13980903	11	3.2	11	91	0	52	25	20	20	34	1.96
13981383--13981441	10	6.0	10	73	15	52	77	3	1	16	0.98
13981633--13982062	44	10.1	43	84	4	482	45	20	11	22	1.84
13982201--13982240	20	2.0	20	90	9	64	30	12	12	45	1.79
13982851--13982985	63	2.1	63	80	0	162	29	30	10	29	1.90
13983664--13983699	16	2.2	17	95	5	65	0	8	0	91	0.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121