genome.fa.s79.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  77  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13211561--13211594	12	2.7	13	86	4	52	26	0	2	70	1.01
13212557--13212590	14	2.3	15	90	10	52	85	0	0	14	0.60
13213052--13213083	3	10.7	3	93	0	55	65	0	3	31	1.08
13213862--13213906	23	2.0	23	95	0	81	53	6	13	26	1.64
13216121--13216214	14	6.8	13	71	21	59	17	1	6	75	1.06
13216126--13216211	28	3.0	27	81	11	91	18	1	6	73	1.12
13216689--13217652	35	26.9	34	67	17	283	42	13	23	20	1.88
13216618--13217693	73	14.9	73	83	4	1222	42	13	22	20	1.88
13216618--13217686	145	7.4	145	84	4	1182	42	14	23	20	1.88
13218697--13218777	10	7.7	10	71	24	51	6	3	6	83	0.88
13229235--13229280	23	2.0	23	100	0	92	52	8	13	26	1.69
13231564--13231625	23	2.7	24	80	7	74	14	0	8	77	0.98
13231582--13231666	16	5.0	16	68	17	55	18	1	8	71	1.17
13232118--13232319	101	2.0	101	90	0	314	44	12	14	28	1.81
13234418--13234485	9	6.7	10	77	12	52	83	1	11	2	0.82
13234419--13234485	16	3.9	17	75	15	57	83	1	11	2	0.82
13234416--13234452	19	1.9	19	88	0	56	89	5	2	2	0.66
13234419--13234483	7	8.9	7	79	16	53	83	1	12	3	0.84
13236618--13236665	6	8.0	6	84	9	62	29	0	6	64	1.18
13238148--13238306	77	2.1	77	83	9	200	38	11	9	40	1.75
13238331--13238402	38	1.9	37	85	2	99	44	15	8	31	1.76
13242074--13242142	29	2.3	30	80	5	77	55	14	8	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13242262--13242286	13	1.9	13	100	0	50	40	0	8	52	1.31
13246971--13247004	11	3.2	11	87	8	52	76	2	0	20	0.92
13247302--13247341	20	2.0	20	85	4	55	65	12	0	22	1.26
13250759--13250837	17	4.6	17	76	16	74	2	15	1	81	0.87
13250760--13250819	21	2.9	20	82	7	75	3	13	1	81	0.89
13250735--13250805	26	2.7	27	79	16	80	8	15	0	76	1.02
13254736--13254769	10	3.4	10	87	0	50	55	0	0	44	0.99
13254898--13254924	9	3.0	9	100	0	54	33	0	0	66	0.92
13261057--13261095	19	2.1	19	85	0	51	25	7	5	61	1.44
13261243--13261285	18	2.2	20	88	8	63	32	0	0	67	0.91
13262741--13262769	2	15.0	2	92	7	51	48	0	0	51	1.00
13264030--13264069	2	20.0	2	94	0	71	0	47	2	50	1.14
13265829--13265877	20	2.4	21	76	13	57	28	0	14	57	1.38
13265988--13266028	5	7.2	6	86	13	52	48	0	2	48	1.14
13265988--13266028	2	21.5	2	81	18	52	48	0	2	48	1.14
13265988--13266028	9	4.3	10	80	20	52	48	0	2	48	1.14
13268402--13268442	3	13.7	3	100	0	82	31	0	0	68	0.90
13269309--13269358	5	9.4	5	80	20	57	18	2	2	78	0.95
13269309--13269416	33	3.3	33	81	10	100	23	3	1	71	1.12
13269368--13269525	3	53.7	3	79	10	130	32	6	0	60	1.28
13271583--13271627	21	2.2	20	92	7	74	53	0	0	46	1.00
13271620--13271657	18	2.1	18	90	9	60	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13278156--13278196	12	3.7	12	75	18	52	60	4	4	29	1.38
13278156--13278205	21	2.4	21	100	0	100	64	4	4	28	1.30
13281521--13281575	28	2.0	28	92	0	92	30	14	18	36	1.91
13281782--13281816	17	2.0	18	94	5	63	54	5	22	17	1.64
13282979--13283025	15	3.1	15	73	11	51	25	4	6	63	1.36
13282977--13283022	18	2.6	18	82	6	58	23	2	6	67	1.25
13283077--13283123	3	15.3	3	95	4	85	31	0	0	68	0.90
13286404--13286464	19	3.2	19	75	9	61	4	29	0	65	1.13
13289011--13289069	21	2.8	20	89	7	82	33	5	1	59	1.29
13290000--13290025	2	13.0	2	100	0	52	50	0	0	50	1.00
13292319--13292401	17	4.9	16	74	15	60	60	3	1	34	1.22
13292397--13292454	31	1.9	30	82	3	71	63	8	1	25	1.32
13292659--13292720	30	2.1	30	85	8	83	25	1	3	69	1.13
13292707--13292769	17	3.4	18	78	8	65	36	4	6	52	1.48
13292773--13292840	35	1.9	35	82	5	84	35	7	4	52	1.49
13292870--13292914	17	2.6	17	85	3	54	28	2	6	62	1.33
13293013--13293042	11	2.9	10	90	9	51	40	6	0	53	1.27
13295451--13295476	7	3.7	7	100	0	52	42	0	0	57	0.98
13298812--13298841	10	3.1	10	95	4	53	63	0	0	36	0.95
13298808--13298854	19	2.5	19	77	19	53	61	4	0	34	1.15
13300124--13300153	2	15.0	2	100	0	60	0	50	0	50	1.00
13305722--13305751	14	2.2	13	94	5	51	50	6	0	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13308528--13308579	22	2.4	22	81	12	54	25	7	1	65	1.30
13308646--13308685	21	1.9	21	90	10	64	25	0	2	72	0.97
13308977--13309018	11	3.8	11	87	0	66	23	0	26	50	1.50
13308976--13309018	22	2.0	22	95	0	77	25	0	25	48	1.51
13309044--13309188	52	2.8	52	84	2	175	43	7	22	26	1.80
13309685--13309769	31	2.7	31	88	0	125	29	22	24	23	1.99
13310121--13310162	11	3.8	11	93	0	75	21	0	28	50	1.49
13310120--13310162	22	2.0	22	100	0	86	23	0	27	48	1.51
13310215--13310338	51	2.5	51	83	11	166	40	8	22	29	1.82
13311075--13311105	11	2.8	11	95	0	53	16	9	0	74	1.07
13311757--13311809	20	2.7	19	77	11	54	32	0	5	62	1.19
13312506--13312531	2	13.0	2	100	0	52	50	0	0	50	1.00
13315816--13315861	24	1.9	24	95	0	83	28	21	13	36	1.91
13321879--13321921	21	2.0	21	100	0	86	23	23	23	30	1.99
13322903--13322938	17	2.2	17	90	5	56	50	0	2	47	1.15
13322965--13323042	23	3.4	23	76	3	68	61	3	3	30	1.32
13330669--13330740	36	2.0	36	88	0	108	48	6	16	27	1.72
13338825--13338867	21	2.0	21	82	8	52	25	9	27	37	1.87
13349349--13349377	5	5.8	5	100	0	58	41	0	0	58	0.98
13349715--13349759	2	22.5	2	100	0	90	0	51	0	48	1.00
13363455--13363529	38	2.0	38	81	5	89	34	16	17	32	1.92
13363789--13363825	17	2.1	19	85	10	51	51	13	2	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13364748--13364832	39	2.2	40	78	6	102	30	11	25	31	1.92
13365100--13365156	11	4.9	12	78	8	73	56	14	1	28	1.48
13365100--13365156	23	2.5	23	94	0	105	56	14	1	28	1.48
13365224--13365257	6	5.7	6	92	0	50	41	17	8	32	1.80
13367564--13367623	29	2.1	30	81	6	70	53	16	5	25	1.63
13367724--13367765	22	1.9	22	85	0	57	47	28	7	16	1.73
13371308--13371354	21	2.2	21	77	7	51	36	6	8	48	1.59
13372188--13372244	28	2.1	28	86	3	80	52	17	5	24	1.65
13372332--13372373	22	1.9	22	85	0	57	52	28	4	14	1.62
13375220--13375264	21	2.2	21	84	11	58	57	2	22	17	1.50
13376114--13376148	16	2.2	16	90	10	54	5	11	5	77	1.12
13376137--13376162	8	3.2	8	100	0	52	11	11	0	76	1.01
13376151--13376196	21	2.2	21	88	0	65	10	13	0	76	1.03
13376330--13376390	18	3.4	18	77	8	70	26	6	18	49	1.71
13376338--13376471	20	7.2	20	68	19	76	30	5	11	51	1.62
13377604--13377643	12	3.4	12	82	6	55	22	7	0	70	1.12
13377604--13377637	11	3.0	11	91	4	50	23	8	0	67	1.18
13378180--13378242	3	20.7	3	90	3	99	33	1	0	65	1.03
13380782--13380818	16	2.4	16	82	17	51	62	10	0	27	1.28
13381776--13381819	23	2.0	22	81	4	52	22	22	13	40	1.89
13384136--13384281	44	3.2	44	78	6	141	54	14	14	16	1.71
13384516--13384610	7	13.4	7	72	19	56	83	2	5	9	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13384547--13384613	1	67.0	1	78	0	62	88	1	4	5	0.70
13384521--13384613	20	4.5	19	77	16	87	84	2	4	8	0.82
13384521--13384611	36	2.5	35	83	15	107	84	2	4	8	0.83
13384516--13384611	50	1.9	49	82	2	120	83	2	5	9	0.88
13384521--13384612	35	2.6	33	79	14	103	84	2	4	8	0.83
13384550--13384648	10	10.1	10	78	18	52	80	1	14	4	0.90
13385432--13385675	137	1.8	133	87	3	362	28	22	13	34	1.93
13385554--13385627	17	4.4	17	68	13	53	25	22	16	35	1.95
13385818--13386089	120	2.3	120	84	1	339	16	23	16	43	1.87
13385903--13386465	301	1.9	301	80	4	661	18	23	14	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121