genome.fa.s79.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  109  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18524808--18524855	23	2.0	25	84	8	64	39	0	0	60	0.97
18524815--18524871	20	2.6	22	75	16	64	38	0	0	61	0.96
18525267--18525312	23	2.0	23	84	12	60	26	4	0	69	1.07
18528087--18528153	25	2.6	27	77	20	79	47	2	0	49	1.16
18528198--18528245	19	2.5	19	83	10	62	62	6	0	31	1.20
18528220--18528300	14	5.5	14	69	15	56	62	8	2	25	1.36
18528271--18528318	20	2.2	20	85	10	60	66	6	0	27	1.15
18528342--18528386	11	4.1	11	79	0	54	71	2	2	24	1.09
18535659--18535718	20	3.0	20	76	9	70	31	1	6	60	1.33
18536995--18537053	31	1.9	31	82	6	75	55	3	0	40	1.16
18540046--18540085	20	2.0	20	100	0	80	45	15	20	20	1.86
18543747--18544002	125	2.0	127	88	4	383	32	24	12	30	1.93
18546673--18546795	62	1.9	65	90	6	198	23	16	21	38	1.93
18546927--18546996	27	2.7	27	91	4	108	40	17	15	27	1.90
18548357--18548404	22	2.2	22	96	3	89	54	0	0	45	0.99
18548356--18548407	21	2.5	20	88	11	79	53	0	0	46	1.00
18548398--18548437	8	4.7	9	82	17	50	60	0	0	40	0.97
18548398--18548437	16	2.3	18	87	8	57	60	0	0	40	0.97
18548398--18548448	18	2.9	18	86	11	63	58	0	1	39	1.09
18556410--18556434	13	1.9	13	100	0	50	72	0	8	20	1.10
18557705--18557735	2	15.5	2	93	0	53	51	0	3	45	1.17
18558923--18558965	17	2.8	15	82	10	52	20	4	27	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18558953--18559032	30	2.7	29	88	5	108	21	0	30	48	1.50
18559154--18559234	14	5.7	14	70	13	51	11	2	35	50	1.51
18559216--18559294	30	2.7	28	81	11	88	18	1	30	49	1.56
18559295--18559351	21	2.7	21	86	5	71	19	3	29	47	1.66
18559485--18559514	3	9.7	3	92	7	51	33	0	0	66	0.92
18559512--18559546	18	1.9	18	88	11	54	28	0	2	68	1.04
18561427--18561654	110	2.1	110	86	0	312	42	11	17	28	1.85
18561743--18561785	22	2.0	22	85	0	59	39	16	13	30	1.87
18563963--18564017	8	6.8	8	82	10	58	9	3	3	83	0.88
18570611--18570649	15	2.6	15	87	0	60	10	0	38	51	1.36
18570630--18570688	21	2.8	19	76	16	55	11	1	33	52	1.48
18570664--18570719	17	3.8	15	82	15	64	19	0	30	50	1.48
18570655--18570719	30	2.1	31	85	2	87	20	1	30	47	1.59
18570676--18570757	8	10.6	8	68	12	55	15	0	36	47	1.46
18570694--18570749	22	2.5	22	82	5	69	14	0	35	50	1.43
18570702--18570820	30	4.0	29	76	10	107	17	0	33	47	1.54
18570933--18570990	30	1.9	30	86	6	82	15	1	34	48	1.55
18571343--18571409	3	23.7	3	76	8	52	25	4	1	68	1.17
18574956--18575024	23	2.9	23	78	8	68	36	7	0	56	1.27
18574999--18575038	20	2.0	20	85	9	55	30	5	0	65	1.14
18576343--18576424	35	2.3	36	76	18	91	58	1	0	40	1.06
18576393--18576432	15	2.5	16	88	8	55	65	5	0	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18578952--18579014	34	1.9	33	93	6	110	47	11	15	25	1.79
18579651--18579681	14	2.2	14	94	0	53	41	0	0	58	0.98
18580624--18580682	27	2.2	26	79	8	66	32	8	0	59	1.28
18581596--18581732	68	2.0	69	98	1	267	39	8	4	47	1.55
18582446--18582484	18	2.2	18	100	0	78	43	5	10	41	1.61
18584752--18584814	34	1.9	33	93	6	110	47	11	15	25	1.79
18586396--18586469	24	3.0	24	73	11	62	36	5	1	56	1.31
18586631--18586714	14	6.1	13	69	12	51	36	1	0	61	1.04
18586658--18586715	17	3.3	17	80	4	53	32	0	0	67	0.91
18586669--18586716	18	2.7	18	78	15	55	33	0	0	66	0.92
18586673--18586788	27	4.4	26	73	17	80	33	1	0	64	1.04
18586731--18586794	21	3.0	20	71	8	56	31	1	0	67	1.00
18587025--18587062	16	2.4	16	78	4	51	44	0	13	42	1.43
18587035--18587081	24	2.0	24	91	0	76	51	0	10	38	1.37
18587276--18587393	35	3.4	35	73	14	127	38	7	3	50	1.48
18587272--18587398	68	1.9	68	98	0	245	39	8	3	48	1.50
18593076--18593390	172	1.8	175	85	4	451	37	11	16	34	1.85
18611939--18611983	20	2.1	22	84	8	58	26	2	4	66	1.22
18623609--18623671	27	2.3	27	86	0	81	31	28	12	26	1.93
18624837--18624869	17	2.1	16	88	11	50	48	6	0	45	1.27
18625204--18625255	25	2.1	25	96	0	95	28	17	7	46	1.75
18629463--18629490	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18629732--18629767	3	12.0	3	93	0	63	33	2	0	63	1.08
18629766--18629790	12	2.1	12	100	0	50	76	0	0	24	0.80
18629769--18629806	17	2.3	17	86	4	51	71	0	2	26	1.00
18630262--18630312	17	3.1	16	70	29	52	41	0	5	52	1.25
18633877--18633974	41	2.4	41	84	0	124	40	12	20	26	1.87
18637175--18637311	61	2.2	61	81	7	154	38	5	16	39	1.72
18645775--18645804	15	2.0	15	93	0	51	46	0	23	30	1.52
18646887--18646923	19	2.1	18	90	10	58	29	0	10	59	1.31
18646931--18646971	19	2.2	19	95	0	73	31	12	21	34	1.91
18649858--18649882	11	2.3	11	100	0	50	44	24	0	32	1.54
18650867--18650944	40	2.0	40	94	0	138	32	5	3	58	1.38
18651027--18651095	34	2.0	34	83	5	86	39	11	8	40	1.72
18659998--18660284	105	2.8	104	80	4	330	22	18	24	34	1.96
18659998--18660299	102	2.9	102	77	6	313	21	19	23	34	1.96
18661562--18661737	72	2.5	70	85	2	228	24	23	18	33	1.97
18661562--18661769	72	3.0	69	82	3	193	23	24	19	32	1.97
18665751--18665815	6	10.8	6	89	0	67	26	0	56	16	1.40
18665759--18665815	12	4.8	12	88	0	78	28	0	56	15	1.40
18665753--18665815	18	3.5	18	80	8	74	26	0	55	17	1.42
18666843--18666911	16	4.3	16	77	3	68	30	1	2	65	1.16
18667631--18667674	22	2.0	22	86	0	61	34	13	11	40	1.81
18679892--18679926	14	2.4	14	95	4	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18680105--18680260	18	8.4	18	69	16	95	54	1	0	42	1.16
18680148--18680231	27	3.1	27	84	3	107	53	2	0	44	1.13
18680110--18680244	59	2.2	62	82	6	168	54	2	0	43	1.12
18680210--18680338	23	5.7	23	76	4	102	54	3	2	40	1.29
18680108--18680315	18	12.6	17	63	21	61	53	2	1	42	1.22
18680387--18680455	18	4.1	17	72	20	54	46	1	0	52	1.09
18680422--18680462	16	2.7	15	85	7	55	48	2	0	48	1.14
18681278--18681320	20	2.3	19	81	18	54	37	2	0	60	1.10
18686651--18686725	25	3.0	25	70	1	62	45	5	16	33	1.69
18694012--18694097	30	2.8	30	78	5	93	54	4	3	37	1.38
18699550--18699603	28	2.0	28	85	7	76	33	5	0	61	1.19
18699588--18699612	7	3.6	7	100	0	50	16	0	0	84	0.63
18699894--18699932	15	2.6	15	83	0	51	58	7	0	33	1.26
18705526--18705602	29	2.6	30	73	24	81	42	1	1	54	1.16
18706276--18706340	20	3.3	18	77	14	67	63	4	0	32	1.15
18706271--18706371	40	2.6	39	80	9	116	60	4	0	33	1.25
18706274--18706362	20	4.4	20	72	18	51	64	4	1	30	1.21
18706562--18706604	18	2.4	19	80	11	54	55	6	0	37	1.27
18707114--18707155	19	2.3	18	84	11	59	28	11	4	54	1.57
18708806--18708836	12	2.6	12	94	0	53	25	0	0	74	0.82
18716223--18716261	17	2.4	16	83	8	51	25	25	12	35	1.92
18716833--18716881	20	2.6	18	87	9	62	46	6	0	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18717782--18717836	26	2.1	26	89	0	83	32	0	0	67	0.91
18717768--18717817	20	2.4	22	80	16	70	32	0	0	68	0.90
18719063--18719096	17	1.9	18	88	5	52	35	0	2	61	1.11
18719948--18719978	16	1.9	16	93	0	53	29	9	16	45	1.79
18726201--18726234	6	5.7	6	92	0	59	64	0	32	2	1.08
18726753--18726795	22	2.0	22	85	0	59	65	0	0	34	0.93
18726791--18726846	25	2.2	25	83	0	67	46	0	1	51	1.11
18726786--18726848	32	2.0	30	85	11	83	47	0	1	50	1.10
18726839--18726914	32	2.3	33	82	10	86	50	1	0	48	1.09
18727228--18727277	22	2.4	21	90	9	84	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121