genome.fa.s79.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  28  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4878147--4878197	23	2.3	22	80	12	59	52	3	0	43	1.19
4878642--4878676	14	2.4	15	90	4	54	25	8	2	62	1.38
4878920--4878992	27	2.6	28	76	8	78	39	2	8	49	1.47
4880346--4880868	59	8.8	56	86	9	645	34	12	7	45	1.71
4880591--4880679	27	3.2	27	63	20	65	38	13	5	42	1.68
4880355--4880873	116	4.4	117	87	7	714	34	12	7	44	1.71
4880948--4881018	11	6.2	11	75	14	63	80	4	1	14	0.93
4880979--4881017	21	1.9	21	89	5	62	79	5	2	12	1.00
4881396--4881439	20	2.2	20	87	0	61	13	27	27	31	1.94
4882102--4882133	3	11.0	3	93	6	57	68	0	0	31	0.90
4882327--4882419	7	13.4	7	76	13	77	5	0	9	84	0.75
4882326--4882415	13	6.9	14	78	15	79	6	0	10	83	0.81
4882354--4882419	1	66.0	1	75	0	60	0	0	12	87	0.53
4882354--4882420	6	11.0	6	87	10	84	0	0	13	86	0.57
4882428--4882917	42	11.9	41	86	7	640	37	22	16	23	1.93
4882428--4882917	83	6.0	83	87	5	653	37	22	16	23	1.93
4884154--4884199	10	4.6	10	81	10	58	2	15	0	82	0.76
4884146--4884189	21	2.2	20	95	4	79	4	15	0	79	0.89
4884137--4884201	30	2.2	28	86	7	94	4	15	0	80	0.88
4884542--4884575	8	4.4	8	92	7	61	11	0	0	88	0.52
4884542--4884575	15	2.3	15	100	0	68	11	0	0	88	0.52
4888041--4888620	59	9.7	57	84	10	695	33	12	8	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888041--4888618	116	4.9	116	88	8	789	33	12	8	45	1.72
4888697--4888756	12	5.2	11	73	16	50	80	5	1	13	0.96
4889849--4889886	3	13.0	3	84	15	53	68	2	0	28	1.03
4890109--4890143	17	2.1	17	94	0	61	31	17	8	42	1.79
4892122--4892180	21	3.0	20	73	16	61	57	1	0	40	1.09
4892130--4892172	16	2.5	17	85	11	61	62	0	0	37	0.95
4893393--4893433	19	2.1	20	86	4	57	48	7	0	43	1.30
4894113--4894215	31	3.3	31	73	6	84	33	5	6	53	1.52
4894187--4894235	21	2.3	21	78	3	53	42	2	8	46	1.45
4897181--4897214	15	2.2	16	89	5	52	76	2	0	20	0.92
4898257--4898359	32	3.3	31	79	6	109	47	7	5	38	1.57
4898601--4898720	32	3.8	32	75	5	129	39	3	6	50	1.45
4900091--4900148	29	2.0	28	87	9	82	46	0	3	50	1.18
4900178--4900214	15	2.4	15	90	4	56	43	2	0	54	1.14
4906718--4906798	30	2.8	30	78	14	80	41	9	0	48	1.36
4908213--4908406	94	2.1	95	86	1	264	35	4	11	47	1.61
4910175--4910228	26	2.0	26	89	7	81	11	9	11	68	1.40
4910186--4910243	26	2.2	26	79	17	66	10	8	10	70	1.34
4911783--4911867	42	2.0	43	86	4	118	23	22	10	43	1.84
4912057--4912096	2	20.0	2	100	0	80	50	0	0	50	1.00
4913746--4913779	16	2.1	16	88	0	50	50	0	8	41	1.34
4914072--4914141	23	3.1	23	67	17	56	44	1	1	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4916505--4916540	18	1.9	19	88	5	56	58	5	0	36	1.22
4916548--4916588	22	1.9	22	90	5	66	36	0	0	63	0.95
4916599--4916636	11	3.4	11	85	7	58	28	0	0	71	0.87
4916589--4916636	23	2.1	23	88	0	69	31	2	0	66	1.03
4916602--4916645	15	2.9	15	86	6	54	27	2	0	70	0.99
4916567--4916636	12	5.9	12	73	6	54	32	1	0	65	1.01
4929758--4929805	16	2.9	16	84	12	62	72	0	4	22	1.01
4930013--4930046	13	2.6	13	86	13	52	52	0	0	47	1.00
4931061--4932668	527	3.0	540	88	4	2348	37	13	12	36	1.83
4933747--4933817	29	2.4	29	86	11	92	45	2	1	50	1.25
4944575--4945095	59	8.8	58	81	10	560	34	13	8	43	1.74
4944580--4945107	119	4.5	117	86	5	645	34	13	8	44	1.73
4946535--4946573	18	2.2	17	90	4	60	17	33	7	41	1.79
4947592--4947664	1	73.0	1	81	0	83	2	0	6	90	0.54
4947592--4947664	12	5.8	12	87	12	103	2	0	6	90	0.54
4947670--4948151	41	12.0	41	94	4	844	36	23	17	22	1.94
4947670--4948151	120	4.0	121	96	3	852	36	23	17	22	1.94
4949307--4949367	21	2.9	21	76	9	52	13	14	0	72	1.13
4953191--4953540	61	5.9	57	81	8	380	34	13	8	44	1.73
4953191--4953537	121	2.9	117	86	5	468	34	13	8	44	1.74
4954959--4954997	18	2.2	17	90	4	60	17	33	7	41	1.79
4955099--4955143	20	2.2	20	88	0	63	31	20	26	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4956438--4956476	20	2.0	20	89	0	60	43	5	0	51	1.24
4956901--4956951	19	2.6	19	82	11	59	27	0	5	66	1.14
4969095--4970383	355	3.7	356	88	5	1848	35	13	14	37	1.85
4974730--4974783	8	7.4	8	82	18	57	0	20	0	79	0.73
4974734--4974778	19	2.3	19	96	3	81	0	20	0	80	0.72
4974730--4974784	28	1.9	29	92	3	94	0	20	0	80	0.72
4975994--4976038	22	2.0	22	82	0	54	62	0	4	33	1.15
4976967--4977006	21	2.0	20	85	5	53	80	5	5	10	1.02
4987988--4988142	48	3.3	47	87	1	220	29	10	18	41	1.84
4988030--4988255	118	1.9	118	88	0	344	30	10	20	38	1.86
4988148--4988460	48	6.6	48	81	5	323	29	11	20	38	1.87
4988629--4988670	19	2.3	19	88	8	61	0	11	2	85	0.68
4988629--4988670	9	4.7	9	88	5	59	0	11	2	85	0.68
4988629--4988670	10	3.7	11	81	15	50	0	11	2	85	0.68
4988643--4988671	10	3.0	10	95	5	51	0	10	6	82	0.83
4996046--4996095	22	2.3	22	85	0	64	36	4	0	60	1.16
4997430--4997471	14	2.9	14	85	3	57	45	0	11	42	1.41
4997600--4997662	26	2.5	26	84	2	83	44	3	3	49	1.34
4997750--4997841	31	3.1	30	79	10	102	44	1	1	53	1.15
4997759--4997812	20	2.8	19	79	15	58	46	0	1	51	1.11
4997846--4997892	22	2.1	22	84	0	58	31	2	4	61	1.27
4999310--4999351	21	2.0	22	85	4	59	42	0	21	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4999801--4999838	18	2.1	19	95	5	69	44	13	5	36	1.66
4999864--5000091	64	3.6	64	80	7	232	37	9	16	36	1.81
5000288--5000326	20	2.0	20	94	0	69	20	48	2	28	1.62
5005153--5005223	34	2.1	34	84	5	90	32	11	11	45	1.75
5005903--5005937	15	2.2	16	90	10	54	71	0	5	22	1.07
5005903--5005944	15	2.7	16	78	14	52	69	0	7	23	1.13
5007707--5007910	105	1.9	105	94	0	363	24	16	29	29	1.97
5008847--5008880	15	2.2	16	89	5	52	61	0	0	38	0.96
5009337--5009371	16	2.3	15	90	5	52	74	0	2	22	0.95
5010765--5010821	15	3.8	14	72	17	51	42	0	0	57	0.98
5010768--5010822	24	2.3	24	74	0	56	43	0	0	56	0.99
5011066--5011090	2	12.5	2	100	0	50	52	0	0	48	1.00
5011685--5011747	19	3.3	19	90	0	99	30	28	7	33	1.86
5018801--5018835	17	2.1	17	88	0	52	37	11	0	51	1.38
5024543--5024649	47	2.3	47	81	3	117	29	3	31	34	1.75
5027333--5027416	10	9.0	10	67	15	54	44	0	2	53	1.13
5030934--5031042	49	2.2	48	82	4	121	22	14	6	55	1.62
5032829--5032863	15	2.3	15	90	0	52	42	14	11	31	1.81
5032857--5032892	18	2.0	18	88	0	54	36	8	13	41	1.75
5032864--5032908	19	2.4	18	89	10	65	35	11	13	40	1.80
5032976--5033065	8	11.2	8	80	13	105	12	13	1	73	1.16
5032987--5033065	15	5.1	15	85	10	97	11	13	1	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5032978--5033061	23	3.6	23	88	6	107	10	13	1	75	1.12
5032949--5033065	40	2.8	40	80	15	121	11	16	0	71	1.18
5037076--5037165	46	2.0	46	88	0	135	25	15	8	50	1.73
5037902--5037944	15	2.9	15	86	10	61	2	32	0	65	1.06
5038568--5038602	14	2.4	15	90	4	54	77	11	0	11	1.00
5038802--5038960	49	3.2	48	85	5	185	32	11	14	41	1.82
5038961--5039178	49	4.4	49	83	4	262	32	12	16	39	1.85
5038973--5039167	97	2.0	97	88	4	286	31	12	16	39	1.85
5038795--5039140	181	1.9	182	86	6	497	33	11	14	39	1.83
5039141--5039228	45	2.0	45	86	4	124	29	15	17	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121