genome.fa.s79.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  112  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19095056--19095093	18	2.1	19	90	5	60	50	0	0	50	1.00
19095524--19095567	22	2.0	21	82	4	52	70	6	15	6	1.31
19096427--19096455	2	14.5	2	100	0	58	48	0	0	51	1.00
19104738--19104788	25	2.0	25	88	0	75	31	31	21	15	1.95
19106944--19106991	2	24.0	2	91	0	78	45	2	2	50	1.25
19108229--19108262	3	11.3	3	100	0	68	64	0	0	35	0.94
19109472--19109504	16	2.2	16	89	10	52	72	0	0	27	0.85
19109595--19109635	20	2.0	20	85	0	55	46	0	2	51	1.14
19111189--19111230	22	1.9	22	85	9	59	57	0	2	40	1.12
19123488--19123571	32	2.7	32	83	1	89	46	1	0	52	1.08
19126744--19126802	24	2.5	24	100	0	118	20	44	20	15	1.87
19126744--19126847	24	4.2	24	79	7	82	22	38	22	17	1.93
19142870--19142906	10	3.8	10	92	7	67	81	0	0	18	0.70
19142870--19142916	19	2.4	19	92	3	76	78	2	2	17	0.94
19142872--19142916	9	4.8	9	89	8	63	80	2	2	15	0.92
19143885--19144189	59	5.2	59	82	3	355	48	5	10	34	1.62
19143968--19144317	126	2.8	125	85	5	448	47	6	11	34	1.65
19143901--19144365	185	2.6	175	79	6	486	47	6	11	35	1.64
19144212--19144365	59	2.6	58	81	8	204	44	5	11	38	1.63
19148366--19148406	10	4.2	10	88	11	59	80	0	9	9	0.91
19148352--19148397	18	2.4	19	89	7	67	71	0	17	10	1.13
19148374--19148406	11	3.1	11	95	4	59	81	0	9	9	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19149649--19149705	21	2.6	22	83	2	71	38	8	12	40	1.74
19149726--19149764	20	2.0	20	94	0	69	38	12	15	33	1.85
19149666--19149849	80	2.3	79	84	1	224	34	11	17	35	1.87
19150098--19150229	42	3.2	41	84	3	185	24	12	22	40	1.88
19150388--19150436	18	2.8	18	84	3	64	75	2	10	12	1.13
19150388--19150437	9	5.7	9	78	2	57	76	2	10	12	1.11
19151380--19151816	59	7.2	60	72	12	297	46	5	11	36	1.63
19154133--19154172	2	20.5	2	89	5	64	47	0	0	52	1.00
19158771--19158800	14	2.1	14	93	0	51	83	13	3	0	0.77
19160604--19160652	26	1.9	25	83	4	62	38	4	8	48	1.52
19161170--19161535	60	6.1	60	83	7	447	33	7	6	51	1.58
19161170--19161542	122	3.1	118	85	8	479	33	7	6	51	1.57
19161170--19161535	59	6.1	59	85	7	468	33	7	6	51	1.58
19161340--19161370	11	2.7	11	95	5	53	29	0	9	61	1.28
19161613--19161655	11	3.8	11	87	3	50	79	0	4	16	0.90
19161606--19161649	12	3.7	12	81	9	54	77	2	6	13	1.07
19161625--19161668	19	2.3	20	76	11	56	77	0	4	18	0.94
19161617--19161665	23	2.1	23	88	7	73	75	0	6	18	1.00
19162938--19162966	13	2.3	13	94	5	51	75	0	0	24	0.80
19174629--19174679	26	2.0	26	88	0	75	43	1	5	49	1.38
19175186--19175555	60	6.1	60	84	9	457	32	8	6	52	1.57
19175193--19175562	126	3.1	119	82	10	466	33	7	6	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19175616--19175678	4	16.5	4	74	12	53	73	1	6	19	1.13
19175619--19175673	15	3.7	15	78	9	58	72	1	7	18	1.16
19175634--19175677	19	2.3	19	96	0	79	72	0	6	20	1.07
19177280--19177304	2	12.5	2	100	0	50	48	0	0	52	1.00
19179482--19179514	3	11.0	3	100	0	66	33	0	0	66	0.92
19186569--19186898	162	2.0	162	100	0	660	34	26	13	25	1.93
19192913--19192967	27	2.0	27	96	0	101	56	20	7	16	1.63
19194266--19194352	18	5.0	17	75	9	77	66	1	1	31	1.06
19194292--19194343	12	4.3	12	78	9	61	67	0	0	32	0.91
19199871--19199912	20	2.1	20	90	0	66	30	11	21	35	1.90
19200131--19200675	254	2.2	253	98	0	1063	37	17	15	29	1.90
19205112--19205188	28	2.7	28	82	7	93	50	16	11	20	1.76
19206077--19206470	145	2.7	145	79	4	348	41	10	12	36	1.76
19206177--19206483	145	2.1	146	81	4	370	41	10	10	38	1.73
19213106--19213139	9	3.8	9	88	11	52	64	0	0	35	0.94
19213107--19213135	10	3.0	10	95	5	51	62	0	0	37	0.96
19217280--19217344	21	2.9	21	80	15	60	43	0	1	55	1.09
19217466--19217538	38	2.0	37	81	10	87	46	13	1	38	1.52
19220097--19220140	22	2.0	22	100	0	88	27	9	36	27	1.87
19222189--19222243	16	3.4	15	74	16	56	47	1	0	50	1.11
19222347--19222384	6	6.5	6	82	17	53	50	0	0	50	1.00
19222322--19222380	11	5.2	11	74	8	55	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19222328--19222427	46	2.2	47	82	10	118	53	5	0	42	1.23
19222771--19222807	7	5.1	7	87	6	56	86	2	0	10	0.67
19228337--19228379	18	2.4	18	88	3	61	9	2	6	81	0.95
19229813--19229942	66	1.9	68	92	3	219	30	12	18	39	1.87
19237795--19237999	102	2.0	102	100	0	410	27	19	15	37	1.92
19239411--19239507	32	3.1	32	80	8	92	45	1	4	49	1.28
19239435--19239507	31	2.3	31	84	11	87	46	0	4	49	1.21
19244781--19244814	17	2.0	17	94	0	59	8	17	26	47	1.77
19254532--19254557	7	3.7	7	100	0	52	15	0	0	84	0.62
19254537--19254578	18	2.3	18	87	4	57	26	0	0	73	0.83
19255264--19255375	54	2.1	54	98	0	215	41	13	16	29	1.86
19263983--19264007	1	25.0	1	100	0	50	100	0	0	0	0.00
19266968--19266999	2	16.5	2	93	6	57	46	0	0	53	1.00
19272959--19273082	57	2.2	58	89	5	191	45	16	8	28	1.77
19277217--19277252	19	2.0	17	89	10	54	55	0	0	44	0.99
19278329--19278389	23	2.6	23	78	5	59	49	8	6	36	1.59
19278546--19278571	11	2.4	11	100	0	52	46	0	7	46	1.31
19279115--19279162	22	2.2	22	82	17	57	50	0	0	50	1.00
19279091--19279158	24	2.7	26	69	19	63	51	0	0	48	1.00
19284143--19284186	10	4.6	9	81	13	52	65	0	0	34	0.93
19284143--19284186	20	2.2	20	92	4	72	65	0	0	34	0.93
19290477--19290526	21	2.4	21	83	12	59	4	18	2	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19291862--19291923	16	3.8	16	85	6	88	29	0	0	70	0.87
19291863--19291928	6	11.7	6	76	16	54	30	0	0	69	0.88
19291846--19291925	33	2.3	35	93	6	137	31	0	0	68	0.90
19291854--19291928	11	6.8	11	75	15	66	30	0	0	69	0.89
19318172--19318206	10	3.4	10	88	4	52	2	8	2	85	0.79
19323562--19323586	3	8.3	3	100	0	50	32	0	0	68	0.90
19325717--19325744	2	14.0	2	100	0	56	50	0	0	50	1.00
19326333--19326363	16	2.0	16	93	6	55	51	3	6	38	1.44
19326367--19326409	11	4.4	10	80	16	54	69	0	0	30	0.88
19326365--19326409	18	2.6	18	82	6	58	71	0	0	28	0.87
19326400--19326441	22	2.0	21	85	4	57	47	0	0	52	1.00
19329831--19329856	13	2.0	13	100	0	52	15	0	0	84	0.62
19331562--19331617	26	2.1	27	96	3	105	25	17	21	35	1.95
19338244--19338281	20	1.9	20	88	0	58	21	23	21	34	1.97
19338969--19339053	30	2.9	29	76	10	73	54	8	5	31	1.54
19345934--19346015	22	3.6	23	73	20	73	45	0	0	54	0.99
19345943--19345993	17	3.1	16	83	10	59	50	0	0	49	1.00
19346540--19346573	17	2.1	16	88	5	50	58	2	0	38	1.13
19349494--19349538	18	2.5	18	81	0	54	55	0	0	44	0.99
19356632--19356696	29	2.3	27	80	15	71	66	0	0	33	0.92
19360871--19360930	27	2.3	26	85	2	75	31	0	0	68	0.90
19363298--19363352	24	2.3	27	73	26	68	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19363305--19363353	24	2.2	21	89	10	71	38	0	0	61	0.96
19364179--19364209	3	10.3	3	100	0	62	64	0	35	0	0.94
19365070--19365101	15	2.1	15	94	5	55	0	6	3	90	0.53
19365077--19365107	13	2.4	13	94	0	53	0	3	3	93	0.41
19367718--19367764	24	2.0	24	87	8	69	44	2	2	51	1.25
19367754--19367933	98	1.8	98	90	0	288	43	6	2	47	1.42
19368017--19368103	17	5.1	17	74	16	65	40	1	3	55	1.24
19368009--19368107	52	1.9	51	97	2	189	40	2	3	54	1.27
19369745--19369785	17	2.4	17	87	0	55	51	0	0	48	1.00
19369712--19369812	40	2.6	41	76	10	104	49	0	1	48	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121