genome.fa.s79.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  120  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20881568--20881823	40	6.2	40	77	10	212	25	10	18	45	1.81
20881557--20881846	127	2.3	125	79	5	309	24	10	19	45	1.82
20881895--20881927	9	3.7	9	100	0	66	90	9	0	0	0.44
20886966--20886997	6	5.3	6	96	0	55	46	0	34	18	1.49
20887336--20887383	15	3.3	15	85	5	62	25	0	12	62	1.30
20888717--20888878	61	2.7	57	77	7	153	33	9	8	48	1.64
20891101--20891148	17	2.8	16	81	12	60	33	16	18	31	1.94
20891077--20891165	34	2.6	34	83	0	106	33	12	22	31	1.91
20891144--20891259	17	6.9	17	73	11	87	43	5	20	31	1.74
20891287--20891341	25	2.2	25	84	12	69	38	9	18	34	1.82
20896659--20896831	56	3.0	56	82	7	186	38	12	4	43	1.63
20901399--20901444	19	2.4	19	85	3	56	17	6	2	73	1.14
20901859--20901903	17	2.6	18	83	16	60	33	4	0	62	1.15
20901860--20901899	18	2.3	17	87	12	55	32	2	0	65	1.06
20903793--20903849	20	2.9	18	79	5	60	1	12	3	82	0.87
20904269--20904300	13	2.3	15	89	10	50	12	12	0	75	1.06
20904370--20904400	15	2.1	14	94	5	53	12	9	0	77	0.99
20918948--20918987	13	3.1	13	81	0	53	57	0	0	42	0.98
20918915--20918990	32	2.4	31	76	20	77	57	2	0	39	1.12
20922971--20922996	2	13.0	2	100	0	52	50	0	0	50	1.00
20927393--20927481	42	2.1	42	93	0	151	42	12	21	23	1.86
20929121--20929382	138	1.9	138	81	4	319	30	15	10	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20934942--20934969	13	2.2	13	100	0	56	46	0	39	14	1.44
20935453--20935483	12	2.6	12	94	0	53	16	19	41	22	1.89
20938445--20938487	16	2.7	16	96	0	77	46	4	2	46	1.36
20938458--20938494	16	2.3	16	90	0	56	51	2	0	45	1.15
20939742--20939768	5	5.4	5	100	0	54	81	0	0	18	0.69
20943914--20944002	30	3.0	30	78	6	99	43	6	13	35	1.70
20945138--20945202	29	2.2	29	94	2	112	35	15	6	43	1.72
20945339--20945425	26	3.1	29	70	12	81	55	1	5	37	1.31
20945569--20945860	151	1.9	153	87	4	430	41	9	6	43	1.62
20946311--20946355	24	2.0	24	84	16	62	53	6	2	37	1.40
20948303--20948350	22	2.2	22	85	7	62	60	4	6	29	1.40
20948384--20948444	22	2.8	22	75	5	61	60	9	4	24	1.48
20948479--20948590	44	2.5	44	78	2	118	49	5	9	35	1.59
20948479--20948593	22	5.2	22	74	0	104	48	5	10	35	1.60
20948918--20949582	22	30.2	22	67	12	125	48	6	9	36	1.60
20949439--20949562	66	1.9	66	81	6	153	46	7	9	36	1.64
20949590--20949689	22	4.5	22	83	5	121	48	8	4	40	1.51
20949616--20949767	44	3.5	44	78	6	123	46	6	7	38	1.59
20949710--20949785	22	3.5	22	79	13	68	43	3	15	36	1.66
20950160--20950212	22	2.4	22	80	0	61	45	13	7	33	1.71
20950238--20950364	22	5.8	22	77	8	98	49	7	3	39	1.49
20950228--20950374	44	3.4	42	75	9	125	48	9	4	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20950228--20950374	66	2.2	67	81	6	183	48	9	4	37	1.57
20950571--20950642	22	3.3	22	73	5	65	41	8	13	36	1.75
20950537--20950642	44	2.4	44	79	6	108	41	9	12	36	1.75
20950631--20950673	22	2.0	22	85	0	59	46	2	4	46	1.36
20952223--20952260	18	2.1	18	90	0	58	73	0	5	21	1.02
20952518--20952575	2	29.0	2	92	0	98	46	0	3	50	1.18
20966121--20966161	22	2.0	20	85	9	55	46	2	7	43	1.44
20967121--20967169	26	1.9	25	87	4	71	73	0	18	8	1.07
20967219--20967257	21	1.9	20	84	5	51	41	0	25	33	1.56
20969983--20970068	33	2.5	35	85	10	108	19	2	8	69	1.25
20970669--20970704	16	2.2	17	90	9	58	61	0	38	0	0.96
20970973--20971010	20	2.0	20	84	5	51	21	0	5	73	1.02
20971398--20971494	44	2.3	43	85	10	137	62	5	8	23	1.43
20971485--20971509	11	2.3	11	100	0	50	84	0	0	16	0.63
20974650--20974690	16	2.6	16	85	11	50	19	19	2	58	1.50
20975466--20975503	19	2.1	18	95	5	67	76	0	13	10	1.02
20975480--20975575	8	11.9	8	73	16	56	77	0	15	7	0.98
20975466--20975576	26	4.5	24	74	18	93	76	0	15	8	1.00
20975481--20975559	16	4.9	15	83	12	86	79	0	15	5	0.89
20975480--20975574	15	5.9	15	72	22	59	76	0	15	7	0.99
20975463--20975594	33	3.9	32	74	14	106	74	0	15	9	1.07
20975477--20975576	25	4.1	24	74	14	89	78	0	15	7	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20976134--20976317	79	2.3	79	78	0	206	35	8	26	29	1.85
20976806--20977092	94	3.0	96	78	6	258	35	11	15	37	1.83
20977343--20977405	33	1.9	33	86	0	90	38	12	14	34	1.84
20979101--20979158	24	2.4	25	77	13	68	44	3	12	39	1.58
20979302--20979364	27	2.3	27	94	0	108	38	11	12	38	1.79
20979449--20979533	44	1.9	44	88	4	127	52	9	10	27	1.66
20984882--20984912	16	1.9	16	93	0	53	38	0	16	45	1.47
20985977--20986046	26	2.6	27	79	6	79	35	4	18	41	1.70
20986546--20986587	20	2.0	21	82	13	52	30	0	19	50	1.48
20986852--20986923	28	2.6	28	95	2	128	36	11	18	34	1.86
20990081--20990111	16	1.9	16	93	0	53	35	3	19	41	1.67
20992256--20992366	16	6.9	16	71	11	75	25	9	5	59	1.51
20992256--20992299	15	2.9	15	86	10	54	22	9	6	61	1.50
20994824--20994858	18	1.9	18	88	0	52	82	5	11	0	0.82
21000133--21000244	41	2.7	41	72	15	106	46	11	8	33	1.71
21000769--21000827	13	4.5	13	91	2	82	37	11	23	27	1.90
21000926--21000970	18	2.6	18	82	10	58	37	11	24	26	1.89
21000940--21000973	13	2.5	13	95	4	59	38	11	23	26	1.89
21001630--21003215	181	8.7	181	78	6	1436	43	8	7	40	1.63
21001629--21003215	362	4.4	361	79	4	1590	43	8	7	40	1.63
21005517--21005564	17	2.8	18	75	9	55	43	8	4	43	1.53
21005235--21005621	181	2.1	181	84	1	490	47	8	6	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21005513--21005566	18	3.1	18	78	10	67	46	7	3	42	1.49
21006181--21006216	13	2.7	13	95	4	63	55	13	5	25	1.60
21006180--21006309	54	2.4	55	82	6	158	53	11	6	28	1.60
21006247--21006302	20	2.8	20	88	0	76	55	12	5	26	1.58
21006294--21006347	18	3.1	17	80	19	58	51	9	9	29	1.65
21006236--21006355	20	6.6	18	67	28	51	53	10	7	29	1.61
21006344--21006404	30	2.1	30	84	6	81	47	8	6	37	1.59
21007238--21007264	3	9.0	3	100	0	54	66	33	0	0	0.92
21007525--21007670	43	3.4	43	81	9	181	43	16	8	31	1.79
21007654--21007975	38	8.5	38	83	6	357	40	19	9	30	1.84
21007654--21007975	76	4.2	76	86	3	409	40	19	9	30	1.84
21008419--21008460	22	1.9	22	90	0	66	45	14	19	21	1.85
21009437--21009483	18	2.5	19	83	12	62	2	8	2	87	0.71
21009437--21009485	21	2.3	20	86	6	62	2	8	2	87	0.69
21010949--21010990	19	2.2	19	91	0	66	42	11	14	30	1.81
21019367--21019419	22	2.5	22	93	3	90	49	0	0	50	1.00
21021467--21021507	21	1.9	22	85	5	57	56	4	2	36	1.34
21028182--21028206	11	2.3	11	100	0	50	0	16	68	16	1.22
21028347--21028399	22	2.5	22	93	3	90	49	0	0	50	1.00
21030446--21030486	21	1.9	22	85	5	57	56	4	2	36	1.34
21034265--21034301	16	2.3	17	86	9	51	72	5	5	16	1.21
21036507--21036585	20	3.8	20	78	6	86	48	27	2	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21036938--21036981	3	14.3	3	95	4	79	65	2	0	31	1.05
21039975--21040005	14	2.2	14	94	0	53	77	0	3	19	0.90
21042815--21042866	19	2.6	20	80	16	63	53	0	0	46	1.00
21045411--21045443	13	2.5	13	100	0	66	78	0	6	15	0.93
21049648--21049690	21	2.0	21	81	0	50	13	27	2	55	1.51
21059154--21059189	2	18.0	2	88	0	54	50	5	0	44	1.25
21063811--21063840	8	3.8	8	95	0	51	0	3	6	90	0.56
21085849--21085912	20	3.3	20	64	24	55	23	7	23	45	1.79
21085808--21086088	39	7.3	38	82	2	274	25	9	22	43	1.83
21085808--21085975	77	2.2	77	84	2	212	24	7	22	45	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121