genome.fa.s79.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  65  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11168141--11168207	19	3.5	19	90	6	100	0	8	0	91	0.43
11168234--11168287	27	2.0	27	81	0	63	11	16	0	72	1.12
11168717--11168804	26	3.6	25	75	11	83	3	13	0	82	0.78
11176153--11176177	12	2.1	12	100	0	50	0	0	8	92	0.40
11180062--11180093	15	2.1	15	94	0	55	50	0	0	50	1.00
11180130--11180178	17	2.8	18	78	15	57	40	2	0	57	1.10
11181764--11181789	6	4.3	6	100	0	52	0	50	0	50	1.00
11189029--11189093	32	2.0	32	100	0	130	33	6	6	53	1.50
11189709--11189753	6	7.2	6	80	9	54	48	2	0	48	1.13
11189712--11189751	19	2.0	20	85	4	55	47	2	0	50	1.14
11191027--11191088	12	5.2	12	77	11	74	80	9	0	9	0.90
11190986--11191088	38	2.7	40	71	17	92	75	8	0	14	1.08
11192463--11192506	15	2.8	15	82	6	52	47	29	0	22	1.51
11192463--11192518	17	3.4	16	80	9	60	46	32	0	21	1.52
11197036--11197062	6	4.5	6	100	0	54	18	18	29	33	1.95
11204079--11204138	9	6.8	9	85	9	79	80	0	11	8	0.92
11204079--11204138	19	3.4	17	82	8	68	80	0	11	8	0.92
11204078--11204146	18	3.8	18	76	16	70	78	0	13	8	0.97
11204741--11204774	17	2.0	17	88	0	50	73	0	17	8	1.08
11205186--11205678	69	6.9	73	79	7	451	20	21	13	43	1.87
11205376--11205540	35	4.8	34	65	5	91	20	21	13	44	1.86
11206083--11206178	28	3.4	27	77	16	79	75	9	2	13	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206083--11206135	27	1.9	28	88	11	83	71	7	3	16	1.24
11206106--11206198	20	5.0	20	69	20	67	75	10	3	10	1.16
11206105--11206173	30	2.3	32	85	9	92	73	11	1	13	1.15
11206100--11206173	7	10.0	7	70	21	53	72	12	1	13	1.18
11206130--11206198	20	3.2	21	82	13	79	78	10	2	8	1.07
11206121--11206174	8	6.6	8	76	23	51	75	11	0	12	1.04
11206111--11206186	22	3.4	23	81	13	81	77	10	1	10	1.05
11206119--11206196	10	7.7	10	73	12	61	78	10	2	8	1.06
11207559--11207618	16	3.9	15	76	6	57	46	35	1	16	1.57
11207590--11207630	15	2.7	15	88	0	64	53	31	4	9	1.55
11207549--11207623	32	2.4	32	80	6	82	49	34	1	14	1.52
11207680--11207756	27	2.7	28	75	9	75	48	27	1	23	1.59
11211131--11211195	22	2.8	23	79	6	69	52	1	1	44	1.19
11214477--11214830	161	2.2	162	83	6	434	42	15	8	32	1.78
11220320--11220351	12	2.6	13	85	14	50	65	6	6	21	1.38
11221912--11221969	28	2.1	28	93	0	98	24	32	10	32	1.89
11222174--11222240	28	2.4	28	89	0	107	25	4	22	47	1.70
11222250--11222302	13	4.2	13	82	4	72	20	1	28	49	1.60
11223891--11223994	52	2.0	52	92	0	172	33	20	8	37	1.83
11225666--11225846	62	2.9	64	70	11	156	35	14	13	37	1.85
11225665--11225894	126	1.8	126	83	3	302	34	16	11	36	1.86
11228397--11228460	23	2.8	22	78	4	65	53	1	3	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11228885--11228926	17	2.6	16	81	7	50	61	2	0	35	1.09
11232098--11232140	20	2.1	20	86	4	59	13	0	16	69	1.19
11232103--11232147	20	2.2	20	84	7	56	17	0	15	66	1.25
11239705--11240200	247	2.0	248	95	0	897	20	23	14	40	1.90
11243469--11243548	18	4.6	18	73	11	69	41	13	11	33	1.80
11243741--11243829	35	2.6	34	80	10	92	41	10	13	34	1.78
11244060--11244271	46	4.7	46	70	7	164	44	17	6	31	1.73
11244064--11244187	45	2.7	45	76	6	142	47	18	4	29	1.67
11244064--11244271	91	2.3	89	83	6	249	45	17	6	31	1.73
11246657--11246685	15	2.0	15	93	6	51	41	10	13	34	1.79
11248876--11248909	18	1.9	18	94	5	61	55	5	2	35	1.39
11249052--11249095	22	2.0	22	82	8	54	65	0	6	27	1.17
11249091--11249148	24	2.4	23	78	13	64	72	3	5	18	1.18
11249134--11249181	18	2.6	19	76	6	53	75	6	8	10	1.20
11249099--11249156	30	1.9	30	82	6	73	75	3	5	15	1.11
11249762--11249800	19	2.1	19	90	0	60	66	0	2	30	1.05
11250423--11250956	265	2.0	265	95	0	971	37	17	9	35	1.82
11253588--11253739	76	2.0	74	92	2	250	19	16	23	40	1.90
11262557--11262626	29	2.4	29	87	0	95	50	14	12	22	1.77
11264817--11264857	21	1.9	22	90	5	66	17	0	34	48	1.47
11265395--11265663	134	2.0	134	96	0	493	43	15	18	21	1.87
11269146--11269187	12	3.5	11	90	6	57	11	21	7	59	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11270270--11270309	19	2.1	19	90	0	62	35	20	5	40	1.74
11272053--11272082	10	2.9	10	95	5	51	40	0	3	56	1.16
11281340--11281398	4	14.8	4	92	0	64	40	23	10	25	1.86
11281340--11281398	12	4.9	12	89	0	73	40	23	10	25	1.86
11285863--11285894	12	2.6	13	85	14	50	71	3	0	25	1.00
11287062--11287099	16	2.4	16	90	0	58	60	2	0	36	1.11
11287527--11287581	18	3.0	18	78	5	65	47	0	0	52	1.00
11287525--11287576	27	2.0	26	84	3	68	46	0	0	53	1.00
11288147--11288188	21	2.0	21	81	13	50	45	2	2	50	1.27
11288383--11288435	21	2.6	20	82	11	63	33	3	5	56	1.41
11288491--11288535	19	2.5	17	78	7	54	33	0	6	60	1.23
11288612--11288649	7	5.4	7	100	0	76	52	0	0	47	1.00
11288636--11288698	20	3.3	18	80	10	72	49	3	4	42	1.39
11288679--11288771	11	8.6	11	65	13	50	44	1	4	50	1.28
11288636--11288721	40	2.2	38	81	10	93	45	3	5	45	1.44
11288709--11288771	11	5.7	12	73	16	55	44	0	3	52	1.17
11288706--11288771	22	3.0	22	82	8	82	45	0	3	51	1.16
11289125--11289189	19	3.5	19	73	21	57	64	6	1	27	1.26
11299314--11299365	18	2.9	17	78	18	52	23	0	13	63	1.29
11305839--11305885	21	2.2	20	82	14	51	51	8	6	34	1.58
11306750--11306789	19	2.0	21	85	9	57	52	20	5	22	1.65
11308164--11308231	18	3.5	19	66	16	50	48	7	8	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11308731--11308897	83	2.0	83	88	4	248	44	17	13	25	1.84
11313614--11313653	18	2.2	19	86	8	57	12	0	40	47	1.41
11313636--11313741	7	15.7	7	75	14	98	27	0	29	43	1.55
11313639--11313709	20	3.5	20	86	1	88	28	0	29	42	1.56
11313685--11313736	26	2.0	26	84	0	68	30	0	25	44	1.54
11314751--11314786	16	2.1	18	90	10	58	2	13	0	83	0.76
11314776--11314835	31	1.9	32	93	3	104	8	30	0	61	1.25
11315840--11315895	20	2.8	20	81	2	60	25	14	17	42	1.87
11316344--11316561	31	7.0	31	72	4	91	22	14	17	45	1.85
11316342--11316638	125	2.4	124	79	5	321	23	16	17	43	1.88
11316920--11316953	11	3.2	11	91	4	52	0	11	0	88	0.52
11320362--11320560	37	5.4	37	79	4	161	37	10	17	34	1.84
11320399--11320574	73	2.4	74	80	7	196	37	10	18	33	1.85
11320626--11320734	44	2.5	42	83	4	128	44	14	12	28	1.82
11329355--11329462	25	4.5	25	74	9	116	37	20	20	22	1.95
11333161--11333222	29	2.2	29	83	11	76	46	6	4	41	1.51
11334246--11334317	28	2.4	29	73	15	76	43	8	4	44	1.53
11334706--11334774	27	2.6	27	80	11	97	47	2	0	49	1.16
11336078--11336513	200	2.2	200	78	6	445	26	16	15	40	1.89
11338917--11339040	62	2.0	62	83	7	155	36	15	15	33	1.89
11338950--11339196	136	1.8	136	80	8	297	34	11	12	40	1.80
11339083--11339345	62	4.2	60	76	8	215	35	14	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11339083--11339349	124	2.2	124	80	5	308	35	13	13	37	1.85
11338867--11339242	198	1.9	198	82	5	474	35	13	12	38	1.82
11347808--11347849	22	1.9	22	95	0	75	47	0	0	52	1.00
11349214--11349257	20	2.2	20	83	0	52	54	13	4	27	1.58
11351613--11351658	13	3.6	12	83	13	56	50	28	2	19	1.60
11351668--11351719	20	2.6	19	85	11	61	42	34	0	23	1.54
11351686--11351747	26	2.4	26	83	5	72	48	29	0	22	1.51
11351681--11351723	20	2.1	21	95	4	79	46	27	0	25	1.53
11352173--11352280	58	1.9	58	88	7	168	51	1	11	35	1.48
11352255--11352288	18	1.9	17	88	5	50	88	0	8	2	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121