genome.fa.s79.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  61  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10355229--10355281	26	2.0	26	92	0	88	26	20	24	28	1.99
10356131--10356183	26	2.0	26	92	0	88	26	20	26	26	1.99
10358802--10358854	26	2.0	26	92	0	88	28	15	26	30	1.96
10359544--10359596	26	2.0	26	92	0	88	28	22	24	24	2.00
10360446--10360498	26	2.0	26	92	0	88	30	20	20	28	1.98
10358828--10361222	902	2.7	895	86	4	3234	25	23	24	26	2.00
10362417--10362469	26	2.0	26	96	0	97	28	26	18	26	1.98
10362232--10366143	884	4.4	894	82	6	4569	25	24	24	25	2.00
10365107--10365159	26	2.0	26	92	0	88	26	22	20	30	1.98
10366000--10366052	26	2.0	26	88	0	79	32	26	16	24	1.97
10366749--10366801	26	2.0	26	89	7	81	28	22	20	28	1.99
10367649--10367701	26	2.0	26	96	0	97	24	26	22	26	2.00
10369412--10369464	26	2.0	26	92	0	88	26	22	20	30	1.98
10366157--10374599	900	9.5	889	82	7	9300	26	24	23	25	2.00
10370302--10370354	26	2.0	26	88	0	79	32	22	16	28	1.96
10371209--10371261	26	2.0	26	96	0	97	28	26	18	26	1.98
10368530--10374599	899	6.8	897	84	5	7230	26	24	23	25	2.00
10372972--10373024	26	2.0	26	100	0	106	26	26	20	26	1.99
10373837--10375344	745	2.0	743	87	2	2175	26	23	23	26	2.00
10375479--10375529	26	2.0	26	92	0	84	27	23	19	29	1.98
10377822--10379346	587	2.6	587	93	0	2555	22	26	28	22	1.99
10378996--10386397	878	8.4	877	84	5	9188	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10381087--10381139	26	2.0	26	85	0	70	28	26	16	28	1.97
10384592--10384644	26	2.0	26	85	7	72	28	24	20	26	1.99
10386371--10386423	26	2.0	26	96	0	97	28	26	18	26	1.98
10389111--10393336	887	4.8	890	82	7	4792	25	24	24	25	2.00
10391721--10391773	26	2.0	26	92	0	88	26	22	22	28	1.99
10394967--10395016	26	1.9	26	95	0	91	24	24	22	30	1.99
10395018--10401209	842	7.1	882	82	8	6997	25	24	24	25	2.00
10401023--10401075	26	2.0	26	96	0	97	28	26	18	26	1.98
10403341--10403393	26	2.0	26	92	0	88	30	22	18	28	1.98
10402016--10405142	893	3.5	887	86	4	3999	25	25	23	25	2.00
10404954--10405301	159	2.2	159	87	1	500	20	29	29	20	1.98
10405275--10405327	26	2.0	26	100	0	106	26	26	20	26	1.99
10406175--10406227	26	2.0	26	92	0	88	26	26	18	28	1.98
10406016--10406429	185	2.2	185	85	0	542	21	27	28	22	1.99
10406360--10406412	26	2.0	26	92	0	88	28	24	18	28	1.98
10408119--10408174	26	2.2	26	90	0	85	32	23	16	28	1.96
10409027--10409081	26	2.1	26	96	0	101	29	27	18	25	1.98
10409904--10409956	26	2.0	26	100	0	106	26	26	20	26	1.99
10406201--10419098	892	14.6	886	83	7	14574	25	25	24	25	2.00
10410796--10410848	26	2.0	26	100	0	106	26	26	20	26	1.99
10411700--10411752	26	2.0	26	92	7	90	28	26	18	26	1.98
10415267--10415319	26	2.0	26	96	0	97	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10417898--10417950	26	2.0	26	96	0	97	28	26	18	26	1.98
10419457--10419509	26	2.0	26	88	0	79	30	24	16	28	1.97
10420346--10420398	26	2.0	26	92	0	88	28	24	20	26	1.99
10421230--10421282	26	2.0	26	96	0	97	28	24	20	26	1.99
10419641--10425240	868	6.2	865	78	11	4658	25	24	24	25	2.00
10424084--10424116	11	3.0	11	100	0	66	18	27	36	18	1.94
10424868--10424920	26	2.0	26	96	0	97	28	26	18	26	1.98
10425464--10425514	26	2.0	26	96	0	93	29	23	17	29	1.97
10425270--10428456	900	3.6	888	85	5	3932	24	25	24	25	2.00
10428714--10428766	26	2.0	26	92	0	88	26	22	22	28	1.99
10430483--10430535	26	2.0	26	92	0	88	26	22	22	28	1.99
10433212--10433261	26	1.9	26	87	0	73	24	26	16	34	1.95
10435026--10435078	26	2.0	26	92	7	90	30	26	16	26	1.97
10428454--10437493	895	10.1	899	84	4	10910	26	24	23	25	2.00
10438808--10438859	26	2.0	26	96	0	95	26	25	19	28	1.98
10440608--10440660	26	2.0	26	96	0	97	24	26	22	26	2.00
10438642--10441551	907	3.2	884	84	5	3885	25	25	23	25	2.00
10441681--10441733	26	2.0	26	88	0	79	26	26	18	28	1.98
10441336--10441762	186	2.3	185	85	0	548	23	27	26	22	1.99
10448463--10448515	26	2.0	26	88	0	79	30	20	18	30	1.97
10449511--10449560	26	1.9	26	91	0	82	28	24	22	26	1.99
10448633--10455607	899	7.9	896	83	5	8232	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10451292--10451342	26	2.0	26	100	0	102	31	23	15	29	1.95
10456415--10456467	26	2.0	26	92	0	88	28	24	18	28	1.98
10457318--10457370	26	2.0	26	92	7	90	30	26	16	26	1.97
10455552--10459929	903	4.8	896	83	5	4664	26	23	23	26	2.00
10458222--10458298	26	3.0	26	96	0	136	28	25	16	28	1.97
10458983--10459060	26	3.0	26	96	0	147	26	25	19	28	1.99
10460776--10460828	26	2.0	26	92	0	88	24	24	22	28	2.00
10460802--10465805	891	5.7	856	84	6	5732	26	24	23	25	2.00
10466277--10466866	119	5.0	118	92	2	950	34	13	7	44	1.72
10466277--10466856	60	9.8	59	87	3	828	35	13	7	43	1.72
10466680--10466774	32	3.1	32	61	27	78	32	14	9	43	1.78
10466872--10466949	15	4.8	16	75	17	63	79	1	5	14	0.96
10466887--10466949	9	6.6	10	81	13	62	82	1	3	12	0.86
10466891--10466942	18	2.9	18	82	2	70	82	1	3	11	0.88
10466877--10466949	14	5.1	14	73	14	60	80	1	4	13	0.92
10467896--10467963	28	2.5	26	82	15	84	66	1	7	25	1.26
10467896--10468008	28	4.3	27	75	21	82	68	1	4	25	1.18
10467968--10468025	7	7.4	8	75	16	50	70	0	0	29	0.87
10467970--10468024	28	2.0	28	92	0	92	69	0	0	30	0.89
10467928--10468051	22	5.8	22	76	15	84	66	3	0	29	1.12
10468186--10468243	20	2.8	20	89	2	89	20	29	29	20	1.98
10468328--10468356	11	2.6	11	100	0	58	0	0	6	93	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10468366--10468704	41	8.1	41	90	3	502	36	23	17	23	1.94
10468366--10468704	83	4.1	83	90	2	504	36	23	17	23	1.94
10469948--10469991	16	2.9	14	81	18	52	4	11	0	84	0.77
10469950--10469992	11	3.7	11	84	9	59	4	11	0	83	0.78
10473181--10473557	119	3.2	118	91	3	600	35	13	8	42	1.75
10473181--10473557	60	6.4	59	85	4	494	35	13	8	42	1.75
10473539--10473576	19	2.0	19	100	0	76	36	15	5	42	1.70
10473479--10473636	79	2.0	79	93	2	273	35	14	7	42	1.74
10473420--10473694	138	2.0	137	86	3	383	34	15	7	42	1.75
10473360--10473728	198	1.9	198	91	1	605	34	13	7	44	1.72
10473558--10473729	58	2.9	59	84	4	220	32	13	6	47	1.69
10473748--10473785	9	4.2	9	83	10	51	84	0	2	13	0.73
10474603--10474667	28	2.4	28	85	12	91	63	1	9	26	1.34
10474659--10474750	18	5.2	17	75	18	73	66	2	0	31	1.04
10474679--10474812	3	44.7	3	68	25	54	65	2	1	29	1.16
10474675--10474735	30	2.0	30	93	0	104	67	0	0	32	0.91
10474698--10474814	30	3.9	29	66	24	66	64	3	1	29	1.19
10474690--10474823	38	3.5	38	70	18	91	65	4	1	28	1.21
10474827--10474870	17	2.5	17	85	7	52	84	0	13	2	0.73
10475040--10484795	890	10.9	892	84	4	12013	25	24	23	25	2.00
10477853--10477911	26	2.3	26	88	5	86	28	22	20	28	1.98
10479633--10479684	26	2.1	24	89	7	77	28	21	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10481413--10481471	26	2.3	26	85	5	86	30	22	18	28	1.97
10482318--10482370	26	2.0	26	88	0	79	30	24	20	24	1.99
10483221--10483273	26	2.0	26	92	0	88	24	20	22	32	1.98
10484122--10484174	26	2.0	26	92	7	90	30	26	16	26	1.97
10486178--10495846	870	11.1	868	87	4	11183	25	24	24	25	2.00
10489680--10489729	26	1.9	26	91	0	82	24	28	22	26	1.99
10490558--10490607	26	1.9	26	91	0	82	24	28	22	26	1.99
10492311--10492363	26	2.0	26	88	0	79	28	20	22	28	1.99
10493192--10493244	26	2.0	26	92	0	88	28	24	20	26	1.99
10487929--10495998	879	9.2	877	84	7	7711	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121