genome.fa.s79.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  84  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14260301--14260329	5	5.8	5	100	0	58	82	0	0	17	0.66
14261437--14261515	28	2.9	26	73	15	79	51	0	1	46	1.08
14261456--14261515	29	2.2	26	72	18	50	50	0	0	50	1.00
14261754--14261845	33	2.8	33	81	0	94	30	18	17	33	1.94
14262281--14262337	10	5.8	10	77	4	53	3	14	1	80	0.92
14263220--14263268	21	2.3	21	83	10	64	0	8	10	81	0.87
14263220--14263267	10	4.7	10	80	10	53	0	8	10	81	0.88
14264817--14264859	9	4.6	10	88	5	56	0	18	0	81	0.69
14264817--14264867	23	2.3	22	87	12	77	1	17	0	80	0.81
14265609--14265648	15	2.7	15	80	0	53	2	10	12	75	1.15
14265779--14265824	11	4.5	10	84	15	51	0	15	4	80	0.86
14265758--14265824	9	7.0	9	74	15	55	1	16	2	79	0.94
14267963--14267991	5	6.0	5	92	8	51	82	0	0	17	0.66
14267962--14267990	14	2.1	14	100	0	58	86	0	0	13	0.58
14274187--14274218	14	2.3	15	89	10	50	34	3	12	50	1.56
14275716--14275744	13	2.2	13	100	0	58	62	6	13	17	1.52
14276349--14276387	20	2.0	20	89	0	60	71	7	7	12	1.29
14276399--14276433	18	1.9	18	88	11	54	71	0	8	20	1.11
14276409--14276442	15	2.3	15	95	5	61	70	0	5	23	1.09
14280237--14280343	54	2.0	54	87	3	153	21	14	15	48	1.80
14280843--14280877	15	2.3	15	90	9	54	62	0	0	37	0.95
14281172--14281241	23	2.8	23	73	22	61	50	2	1	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14281683--14281722	21	1.9	21	94	0	71	72	0	12	15	1.12
14282075--14282199	62	2.0	61	87	7	182	48	4	2	44	1.37
14286531--14286606	12	5.9	13	67	18	52	51	2	1	44	1.23
14287276--14287329	23	2.3	23	84	6	65	38	3	1	55	1.28
14287298--14287390	10	9.0	10	72	17	50	47	3	2	47	1.30
14287336--14287376	13	3.5	12	87	9	50	48	4	2	43	1.37
14287471--14287566	47	2.0	47	82	4	113	54	5	0	40	1.23
14287740--14287923	29	6.4	29	71	12	128	53	2	3	41	1.29
14288250--14288329	29	2.7	29	86	1	97	51	3	2	42	1.33
14288375--14288447	10	7.2	10	71	3	56	41	1	4	53	1.28
14288342--14288491	21	7.2	21	71	3	99	42	3	3	51	1.35
14288390--14288491	42	2.4	41	81	3	114	41	1	4	51	1.34
14288672--14288739	31	2.2	30	81	2	73	42	5	10	41	1.63
14288671--14288769	30	3.3	31	80	4	94	45	4	10	40	1.57
14288719--14288778	30	2.0	30	93	6	104	53	0	10	36	1.35
14289827--14289884	31	1.9	30	85	3	80	41	1	10	46	1.48
14289948--14289988	17	2.4	18	76	15	52	39	4	0	56	1.21
14293900--14293938	18	2.3	16	86	8	51	28	0	5	66	1.12
14295150--14295204	21	2.6	21	88	0	74	14	23	38	23	1.92
14295230--14295271	9	4.6	9	85	14	59	88	0	11	0	0.53
14295229--14295264	12	3.1	12	92	4	56	91	0	8	0	0.41
14295227--14295276	19	2.5	19	87	6	64	86	0	12	2	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14295458--14295593	44	3.1	44	83	4	143	38	17	13	29	1.89
14295433--14295591	44	3.7	44	80	6	139	37	17	14	30	1.90
14295699--14295981	99	2.9	99	81	3	338	40	20	12	25	1.88
14295931--14296107	42	4.2	42	82	3	196	41	23	10	24	1.85
14295831--14296262	225	1.9	225	81	4	523	40	21	12	25	1.88
14296177--14296259	42	2.0	42	82	0	103	39	19	12	28	1.87
14296033--14296306	141	1.9	141	88	2	408	39	22	12	24	1.90
14296308--14296822	133	4.0	133	77	12	500	44	14	11	29	1.80
14296461--14296886	115	3.5	114	75	14	386	42	14	11	30	1.81
14296577--14296822	134	1.8	134	88	1	377	42	13	12	31	1.81
14296337--14296885	249	2.2	251	88	2	820	43	14	11	30	1.81
14296783--14296865	43	2.0	41	88	7	121	44	18	9	27	1.80
14297077--14297197	35	3.5	35	85	2	163	38	10	14	36	1.80
14297629--14297675	24	2.0	24	83	8	60	42	14	0	42	1.46
14298770--14298807	8	4.8	8	87	12	60	0	10	10	78	0.95
14298769--14298808	9	4.8	9	87	12	59	0	10	10	80	0.92
14304230--14304263	14	2.3	15	90	5	52	20	5	8	64	1.43
14307686--14307729	3	14.7	3	100	0	88	68	0	0	31	0.90
14308695--14308724	15	1.9	16	93	6	53	56	3	0	40	1.16
14311640--14311696	28	2.0	28	89	0	87	47	8	28	15	1.75
14314012--14314045	2	17.0	2	93	0	59	47	0	2	50	1.16
14318064--14318098	3	11.7	3	100	0	70	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14318496--14318521	13	2.0	13	100	0	52	0	15	0	84	0.62
14322386--14322424	21	1.9	20	84	5	51	38	10	17	33	1.84
14324362--14324398	13	2.8	13	87	4	56	64	2	5	27	1.28
14332365--14332389	2	12.5	2	100	0	50	52	0	48	0	1.00
14335419--14335634	109	2.0	108	80	4	238	29	15	9	45	1.78
14336889--14336930	2	21.0	2	100	0	84	50	0	50	0	1.00
14338971--14339025	28	2.0	27	82	10	67	12	9	3	74	1.18
14342672--14342711	21	2.0	20	85	5	53	45	12	12	30	1.79
14348311--14348349	20	2.0	20	94	0	69	35	25	15	23	1.94
14354972--14355004	2	16.5	2	100	0	66	0	51	0	48	1.00
14356422--14356495	18	3.8	19	70	24	57	35	2	0	62	1.10
14356423--14356465	22	2.0	22	90	9	70	37	2	0	60	1.10
14362058--14362271	111	1.9	112	94	0	376	40	13	14	32	1.84
14363587--14363628	2	22.5	2	86	13	63	52	0	0	47	1.00
14363586--14363629	9	5.2	9	86	13	67	54	0	0	45	0.99
14364248--14364305	25	2.5	24	83	10	84	31	0	10	58	1.31
14365346--14365394	3	16.3	3	87	8	73	65	0	2	32	1.04
14365569--14365643	4	18.5	4	70	22	50	21	4	4	70	1.20
14368428--14368467	3	13.0	3	94	5	71	65	2	0	32	1.06
14369281--14369380	3	32.7	3	71	18	57	65	3	4	28	1.26
14369263--14369339	20	3.8	20	75	11	77	70	0	5	24	1.08
14369329--14369368	15	2.7	15	88	3	64	60	7	0	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14373035--14373127	47	2.0	47	86	0	132	26	9	9	53	1.64
14373177--14373499	174	1.9	175	85	4	456	38	12	8	41	1.72
14381254--14381395	29	4.8	29	77	8	110	54	4	2	38	1.35
14381888--14381998	56	2.0	55	87	1	159	27	10	14	47	1.77
14390001--14390028	2	14.0	2	100	0	56	50	0	0	50	1.00
14392737--14392800	33	1.9	33	93	0	110	34	10	31	23	1.89
14397715--14397768	13	4.2	12	77	11	54	42	0	3	53	1.18
14397695--14397753	21	2.9	20	69	18	50	49	0	1	49	1.11
14399758--14399851	34	2.8	35	84	9	115	36	4	8	51	1.52
14399829--14399869	18	2.4	16	88	8	55	46	0	2	51	1.14
14399782--14399883	34	3.1	34	79	9	95	39	1	7	50	1.42
14400424--14400482	29	2.0	29	81	12	68	61	1	0	37	1.07
14400524--14400591	29	2.3	29	79	0	82	51	2	0	45	1.16
14403124--14403153	2	15.0	2	100	0	60	50	0	0	50	1.00
14404426--14404480	27	2.0	27	100	0	110	20	14	25	40	1.90
14409250--14409287	18	2.1	18	95	0	67	28	15	21	34	1.94
14409640--14409703	28	2.3	30	84	10	82	37	1	0	60	1.06
14409676--14409723	23	2.1	23	84	0	60	47	4	0	47	1.21
14409714--14409775	28	2.1	29	82	5	72	38	9	3	48	1.52
14411390--14411419	15	2.0	15	93	0	51	76	0	0	23	0.78
14414690--14414714	11	2.3	11	100	0	50	68	0	0	32	0.90
14420882--14420920	20	2.0	20	100	0	78	41	5	2	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14424200--14424260	27	2.3	27	80	8	72	44	6	4	44	1.51
14424266--14424332	30	2.2	30	75	0	71	47	0	2	49	1.16
14424462--14424508	22	2.2	22	84	3	60	48	0	0	51	1.00
14424988--14425035	18	2.9	17	84	9	64	58	2	0	39	1.10
14424985--14425083	34	2.9	34	86	4	121	52	8	1	38	1.38
14427439--14427493	20	2.8	19	76	10	58	52	0	0	47	1.00
14429761--14429804	11	4.0	11	85	8	54	43	0	0	56	0.99
14429761--14429804	21	2.0	23	86	8	65	43	0	0	56	0.99
14434152--14434195	20	2.2	20	84	4	54	34	0	0	65	0.93
14434158--14434221	28	2.3	29	89	5	96	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121