genome.fa.s79.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  91  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15464320--15464367	20	2.3	22	92	7	82	54	0	0	45	0.99
15464320--15464367	22	2.3	20	89	7	69	54	0	0	45	0.99
15467348--15467406	27	2.2	27	78	6	66	40	3	1	54	1.27
15470098--15470158	25	2.4	25	77	2	68	34	4	19	40	1.73
15470176--15470240	26	2.5	26	82	7	69	38	3	18	40	1.66
15470285--15470398	54	2.2	53	87	6	160	40	7	14	36	1.76
15471189--15471243	25	2.2	26	87	9	78	38	0	23	38	1.55
15471560--15471616	25	2.2	26	87	3	80	43	5	8	42	1.58
15473816--15473855	16	2.4	16	87	8	53	77	2	7	12	1.07
15473943--15473976	17	2.0	17	88	0	50	85	2	2	8	0.80
15475243--15475326	38	2.3	37	83	8	100	64	1	2	32	1.14
15475387--15475434	15	3.1	16	80	17	57	62	2	4	31	1.26
15477085--15477151	29	2.3	29	82	7	73	52	5	7	34	1.54
15493853--15493885	5	6.4	5	96	3	57	36	0	0	63	0.95
15493850--15493889	15	2.5	16	88	12	64	37	0	0	62	0.95
15493850--15493901	21	2.5	21	79	20	56	32	0	1	65	1.04
15497987--15498021	2	17.5	2	93	0	61	51	45	0	2	1.16
15497991--15498031	8	5.1	8	93	0	55	51	39	0	9	1.35
15497991--15498029	12	3.2	12	92	0	60	51	41	0	7	1.31
15498975--15499032	31	1.9	30	82	3	71	31	10	13	44	1.78
15499062--15499087	2	13.0	2	100	0	52	50	0	0	50	1.00
15499996--15500054	19	3.1	19	80	4	73	32	8	15	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15500628--15500652	12	2.1	12	100	0	50	44	0	24	32	1.54
15504976--15505032	22	2.7	22	74	15	57	56	1	3	38	1.27
15508344--15508565	74	3.1	75	78	10	212	40	3	4	51	1.41
15508390--15508598	73	2.8	72	80	5	224	38	3	5	52	1.42
15512980--15513028	26	1.9	25	83	4	62	34	0	16	48	1.46
15513235--15513281	24	1.9	25	83	12	62	44	0	14	40	1.46
15513799--15513852	25	2.2	25	86	6	74	25	3	24	46	1.69
15516875--15516944	29	2.4	27	78	17	70	24	7	2	65	1.31
15517314--15517349	18	2.0	18	88	0	54	72	0	0	27	0.85
15520288--15520322	15	2.2	16	95	5	63	42	8	0	48	1.33
15522865--15522899	18	1.9	18	88	11	54	28	2	0	68	1.04
15523617--15523657	17	2.5	16	80	7	55	82	7	4	4	0.93
15531884--15532352	48	9.9	47	82	5	472	28	13	19	39	1.88
15532179--15532449	44	6.1	44	83	4	260	30	13	17	38	1.88
15534336--15534625	59	4.9	59	82	8	320	47	5	11	35	1.62
15534545--15534629	31	2.8	30	73	10	84	49	5	7	37	1.54
15536367--15536408	12	3.6	12	83	6	59	71	0	2	26	0.98
15539873--15539905	3	11.0	3	87	12	50	33	0	0	66	0.92
15540783--15540838	20	2.8	21	86	7	73	64	1	8	25	1.32
15540809--15540850	19	2.2	19	86	0	57	76	0	7	16	1.00
15541678--15541714	18	2.0	19	89	5	58	37	37	16	8	1.78
15542126--15542168	18	2.4	18	84	7	52	62	0	6	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15543086--15543147	11	5.5	11	74	12	54	82	4	4	8	0.95
15551456--15551498	18	2.4	18	84	7	52	62	0	6	30	1.21
15554380--15554435	16	3.4	16	82	4	76	83	7	3	5	0.88
15554379--15554435	8	7.0	8	80	4	60	82	7	3	7	0.94
15554419--15554468	22	2.3	23	80	16	63	76	8	12	4	1.15
15555416--15555470	21	2.6	21	82	5	67	30	0	1	67	1.01
15555727--15555761	13	2.7	13	100	0	70	48	28	8	14	1.73
15557430--15557479	13	3.9	13	77	15	59	0	18	0	82	0.68
15557430--15557482	14	3.7	14	73	12	54	0	18	0	81	0.70
15557816--15557850	18	1.9	18	88	11	54	85	8	0	5	0.73
15557813--15557850	19	1.9	19	85	15	51	81	10	0	7	0.87
15558396--15558467	30	2.4	29	77	11	74	34	1	2	61	1.19
15570985--15571367	48	8.0	47	77	6	279	29	10	19	40	1.85
15570994--15571367	96	3.9	96	84	2	448	29	11	18	40	1.85
15571347--15571556	44	4.8	44	80	8	223	30	13	14	41	1.84
15571328--15571573	133	1.8	133	83	5	327	29	13	15	42	1.84
15573429--15573467	17	2.3	17	86	8	53	33	25	20	20	1.97
15574026--15574066	15	2.9	14	85	7	55	51	34	0	14	1.43
15574082--15574219	30	4.6	31	74	9	108	48	29	1	20	1.58
15574167--15574219	22	2.5	20	77	14	54	54	33	0	11	1.36
15580764--15580805	14	3.1	14	80	16	52	85	2	7	4	0.80
15580755--15580805	24	2.2	24	82	3	59	86	3	5	3	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582611--15582877	133	2.0	134	84	6	346	35	15	14	34	1.88
15582914--15583326	111	3.8	108	76	8	386	24	19	16	39	1.91
15583251--15583434	88	2.1	88	84	0	233	21	18	17	42	1.89
15583133--15583813	198	3.4	194	79	7	638	22	19	17	40	1.91
15583348--15583558	110	1.9	110	83	3	273	23	16	16	43	1.88
15585510--15585552	15	3.0	14	83	6	59	46	37	2	13	1.57
15585651--15585703	22	2.5	20	77	14	54	56	32	0	11	1.35
15586992--15587034	18	2.4	18	96	0	77	44	9	16	30	1.79
15593368--15593422	16	3.4	16	81	16	69	80	9	5	5	1.03
15593378--15593446	27	2.6	25	80	11	75	79	8	7	4	1.04
15594418--15594463	21	2.1	22	84	4	58	34	0	2	63	1.07
15596538--15596562	9	2.8	9	100	0	50	88	0	0	12	0.53
15598363--15598420	9	5.9	9	79	18	55	3	17	0	79	0.87
15598367--15598415	20	2.5	20	77	12	55	2	18	0	79	0.83
15598566--15598614	23	2.1	23	88	0	71	44	12	14	28	1.81
15605856--15605881	13	2.0	13	100	0	52	30	7	23	38	1.83
15610736--15611118	48	8.0	48	74	7	294	27	12	20	39	1.88
15611098--15611300	44	4.6	44	85	2	230	29	14	15	40	1.87
15613386--15613479	7	12.9	7	72	15	57	73	1	18	7	1.12
15613387--15613443	28	2.1	28	90	6	91	78	1	14	5	0.99
15614705--15614922	34	6.4	34	80	1	184	28	18	13	38	1.89
15614724--15614937	17	12.5	17	67	8	76	28	19	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15614668--15614914	103	2.4	103	83	4	286	28	17	13	40	1.88
15614867--15614972	51	2.1	50	84	5	133	29	16	12	41	1.85
15614908--15614970	17	3.8	17	78	2	56	30	12	12	44	1.80
15615135--15615369	85	2.8	85	83	1	283	20	16	19	44	1.87
15616860--15617208	61	5.9	60	79	7	315	44	6	12	35	1.69
15616861--15617208	121	3.0	120	82	7	353	44	6	12	35	1.69
15620705--15620736	17	1.9	16	93	6	55	87	6	6	0	0.67
15620704--15620748	17	2.6	16	82	6	54	82	4	13	0	0.82
15621112--15621202	33	2.8	32	80	18	100	71	1	17	9	1.19
15622447--15622509	17	3.7	17	79	8	65	26	20	14	38	1.91
15622497--15622627	17	7.7	18	64	10	60	37	22	7	32	1.82
15622431--15622675	34	7.2	34	81	4	226	33	19	11	36	1.87
15622623--15622675	17	3.2	16	81	7	61	28	13	13	45	1.80
15622630--15622692	17	3.8	17	80	4	74	30	9	14	46	1.76
15622867--15623111	85	2.9	84	80	6	253	20	17	17	45	1.86
15622974--15623132	85	1.9	83	83	10	205	20	16	17	45	1.86
15622958--15623150	85	2.3	83	79	10	196	21	17	17	44	1.87
15624598--15624951	60	5.9	58	83	10	394	45	7	12	34	1.70
15625649--15625696	8	6.5	8	76	13	50	2	12	0	85	0.69
15625649--15625696	7	6.7	7	80	20	55	2	12	0	85	0.69
15625656--15625690	10	3.4	10	88	4	52	2	11	0	85	0.69
15625650--15625701	13	3.8	13	80	12	59	3	11	0	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15625649--15625703	11	4.7	11	76	12	56	3	12	0	83	0.77
15625647--15625701	18	3.1	18	76	10	58	5	10	0	83	0.79
15625649--15625703	19	3.1	17	84	7	65	3	12	0	83	0.77
15626715--15626755	12	3.5	12	83	6	57	68	0	2	29	1.03
15630976--15631010	15	2.2	16	90	5	54	42	5	0	51	1.25
15634597--15634632	16	2.2	16	90	9	56	25	0	0	75	0.81
15635589--15635647	20	3.2	18	79	9	57	69	8	5	16	1.32
15636040--15636086	21	2.2	21	88	0	67	70	6	12	10	1.33
15638236--15638266	11	2.7	12	95	5	55	90	6	0	3	0.55
15655470--15655504	14	2.5	14	90	9	54	82	2	11	2	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121