genome.fa.s79.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  54  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9262154--9262188	16	2.2	16	90	10	54	48	2	0	48	1.16
9262177--9262222	22	2.1	22	84	8	58	45	2	2	50	1.26
9262225--9262287	26	2.5	24	76	5	63	49	0	6	44	1.28
9262361--9262406	3	15.7	3	79	20	53	26	0	0	73	0.83
9262360--9262407	15	3.2	15	83	16	64	25	0	0	75	0.81
9262360--9262406	24	2.0	24	91	8	78	25	0	0	74	0.82
9262365--9262408	18	2.4	19	92	7	74	25	0	0	75	0.81
9262883--9262922	14	2.9	14	88	7	55	57	0	42	0	0.98
9263298--9263650	59	6.1	57	73	16	202	45	5	13	35	1.68
9263307--9263471	58	2.8	59	82	13	205	46	5	13	33	1.67
9263495--9263651	61	2.6	61	83	5	203	43	7	11	37	1.68
9266819--9266849	15	2.1	15	93	0	53	22	19	3	54	1.58
9269649--9269687	21	2.0	21	90	10	64	76	2	15	5	1.06
9270748--9270806	22	2.7	22	89	0	82	35	8	18	37	1.81
9271035--9271248	108	2.0	106	80	5	243	30	14	21	33	1.93
9271478--9271754	44	6.3	43	79	4	243	21	11	21	45	1.84
9271449--9271719	88	3.1	88	81	7	302	19	12	20	46	1.82
9271504--9271719	86	2.5	86	77	10	213	20	12	21	44	1.85
9272734--9273091	61	6.0	57	80	9	242	45	6	13	34	1.70
9272767--9273098	60	5.5	61	80	7	310	45	7	13	33	1.71
9273569--9273618	22	2.3	21	82	3	64	48	2	0	50	1.12
9273747--9273796	23	2.2	23	82	13	59	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9273755--9273800	22	2.0	22	88	12	67	45	0	0	54	0.99
9273730--9273802	27	2.7	26	81	14	69	47	1	0	50	1.09
9273923--9273965	12	3.4	13	84	12	54	46	0	0	53	1.00
9273920--9273968	19	2.5	20	84	12	59	44	0	0	55	0.99
9274299--9274328	14	2.1	14	93	0	51	46	3	0	50	1.18
9274535--9274611	14	5.2	15	68	21	56	54	0	3	41	1.19
9274840--9274864	13	1.9	13	100	0	50	52	0	8	40	1.31
9274971--9275009	13	2.8	14	88	11	62	48	0	0	51	1.00
9274943--9275009	28	2.3	29	80	12	68	50	2	0	46	1.16
9274969--9275013	20	2.1	22	80	12	58	46	0	0	53	1.00
9275008--9275063	22	2.6	23	83	13	66	42	0	3	53	1.18
9276103--9276156	14	3.6	15	81	13	58	46	0	1	51	1.11
9276102--9276166	31	2.1	31	88	5	96	46	0	1	52	1.10
9277116--9277164	24	2.0	24	88	7	73	53	8	18	20	1.70
9278530--9278598	18	3.7	18	72	14	59	46	0	4	49	1.21
9278688--9278751	24	2.7	25	84	13	75	53	0	0	46	1.00
9278706--9278751	22	2.0	22	87	8	65	56	0	0	43	0.99
9278921--9279723	361	2.2	364	78	7	806	38	7	9	44	1.66
9279830--9280674	358	2.4	359	80	5	942	40	8	8	42	1.66
9278921--9280679	181	9.7	180	74	10	1181	39	8	9	42	1.67
9278921--9280616	910	1.9	915	79	6	1948	39	8	9	43	1.66
9285966--9286771	181	4.5	181	80	5	846	41	10	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9285982--9286761	361	2.2	360	82	3	953	42	10	6	40	1.66
9287618--9287666	17	2.8	18	84	12	66	44	4	6	44	1.47
9289458--9289879	179	2.4	178	81	7	443	40	7	8	42	1.65
9289190--9289926	180	4.2	177	76	8	599	41	8	9	41	1.67
9290519--9292100	181	8.8	181	77	5	1293	41	9	9	39	1.70
9290519--9292099	361	4.4	360	76	6	1363	41	9	9	39	1.70
9292294--9292330	18	2.0	19	94	5	67	43	8	16	32	1.77
9292105--9303655	361	32.3	360	70	12	3493	39	8	10	41	1.69
9292105--9297191	180	28.5	178	73	8	2718	39	8	10	41	1.70
9293012--9295415	897	2.7	879	75	7	1978	39	8	10	40	1.71
9292232--9303655	541	21.3	535	72	11	4473	39	8	10	41	1.69
9297267--9298315	181	5.8	181	74	11	781	41	8	10	40	1.68
9298184--9298469	154	1.9	155	86	3	416	42	6	10	40	1.66
9297796--9298832	517	2.0	514	79	4	1133	40	8	10	40	1.69
9298380--9298863	181	2.7	180	78	8	536	39	9	9	42	1.69
9299164--9299271	54	2.0	54	98	0	207	35	8	5	50	1.56
9299164--9299289	54	2.3	54	90	2	173	34	7	4	52	1.52
9299221--9303131	181	21.8	179	73	9	1928	39	7	10	42	1.68
9299221--9306884	361	21.1	358	71	11	3372	40	8	10	41	1.69
9300159--9300196	3	13.0	3	94	5	69	31	0	0	68	0.90
9299218--9303655	362	12.5	349	73	12	1684	39	7	10	41	1.68
9300660--9303174	360	7.0	357	74	8	1794	39	7	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9303173--9303668	181	2.8	175	80	5	557	42	9	9	39	1.68
9303687--9306884	181	17.8	181	75	8	2357	40	8	10	40	1.69
9303674--9306857	538	5.9	530	75	9	1998	40	8	10	40	1.70
9309703--9309751	17	2.8	18	84	12	66	44	6	4	44	1.47
9310600--9311404	181	4.5	181	80	4	851	40	7	9	41	1.66
9311303--9311338	16	2.1	17	90	10	56	50	2	5	41	1.40
9312731--9312965	113	2.1	113	90	0	371	32	18	27	21	1.97
9339576--9339714	45	3.1	45	77	4	145	28	23	27	20	1.99
9355786--9355835	22	2.3	22	92	0	82	28	34	14	24	1.93
9357907--9358714	407	2.0	407	96	0	1483	24	25	17	31	1.97
9371451--9371505	23	2.2	25	81	18	78	29	16	32	21	1.95
9371461--9371504	23	1.9	23	100	0	88	29	15	31	22	1.95
9434694--9434780	45	1.9	45	83	0	111	27	19	28	24	1.98
9434843--9434941	23	4.3	23	82	0	108	31	37	13	18	1.89
9434843--9434941	46	2.2	46	83	0	126	31	37	13	18	1.89
9435384--9435441	26	2.2	27	81	3	64	62	8	3	25	1.40
9443683--9443726	21	2.2	20	84	12	54	50	0	20	29	1.49
9447026--9447079	25	2.2	25	87	6	76	20	9	18	51	1.73
9460233--9461059	410	2.0	410	87	1	1212	33	22	20	23	1.98
9461904--9462010	45	2.4	45	79	3	126	30	20	25	23	1.98
9469060--9469213	77	2.0	77	98	0	299	24	31	10	33	1.89
9472332--9472399	26	2.5	28	88	9	104	27	1	2	67	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9473197--9473238	13	3.3	13	86	3	50	16	0	11	71	1.14
9473291--9473325	12	3.0	11	84	15	52	77	0	2	20	0.90
9473652--9473693	19	2.2	20	86	4	59	69	2	4	23	1.20
9485637--9485708	33	2.2	33	82	0	81	26	15	20	37	1.92
9485636--9485862	117	2.0	111	82	12	273	25	13	21	39	1.90
9485670--9485862	40	4.9	39	81	8	198	24	13	21	39	1.90
9486001--9486062	3	21.0	3	85	9	83	32	0	1	66	1.02
9486506--9486542	19	2.0	18	89	5	56	27	21	16	35	1.94
9486884--9486933	19	2.6	19	80	3	55	16	2	8	74	1.15
9486910--9486947	12	3.4	11	85	14	51	15	0	7	76	1.01
9486972--9487048	11	6.7	11	72	19	59	72	3	1	22	1.08
9487008--9487042	18	1.9	18	88	11	54	68	8	0	22	1.16
9487323--9487356	10	3.3	11	92	8	54	76	5	0	17	0.98
9498363--9498467	45	2.3	45	80	3	113	26	26	25	20	1.99
9504926--9504973	22	2.2	22	88	0	69	29	12	31	27	1.93
9535518--9535589	32	2.2	32	97	0	135	22	27	13	36	1.92
9547866--9548100	115	2.0	115	97	0	443	26	14	29	29	1.95
9557473--9557505	10	3.4	10	83	8	50	60	0	6	33	1.21
9568966--9569110	70	2.1	71	96	1	265	18	28	22	30	1.97
9576988--9577035	3	15.7	3	95	4	87	33	0	0	66	0.92
9577193--9577265	35	2.0	38	82	12	91	53	2	1	42	1.23
9577468--9577514	16	2.7	19	75	21	57	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9577559--9577607	18	2.9	15	78	21	53	38	4	2	55	1.31
9577545--9577597	23	2.3	23	90	9	81	39	3	1	54	1.29
9577913--9577983	17	4.1	16	74	15	52	49	2	2	45	1.31
9577951--9578080	39	3.3	39	73	16	115	43	3	3	49	1.36
9578427--9578466	21	2.0	21	90	9	66	55	0	0	45	0.99
9578454--9578487	13	2.6	13	85	0	50	38	2	0	58	1.13
9578556--9578620	28	2.3	28	84	12	80	50	0	1	47	1.10
9578693--9578760	27	2.6	27	83	4	77	44	0	4	51	1.21
9578906--9578937	16	1.9	17	93	6	57	43	0	6	50	1.27
9579634--9579700	22	3.1	22	83	10	77	46	4	4	44	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121