genome.fa.s79.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  92  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15655469--15655511	12	3.5	12	80	3	50	81	2	9	6	0.95
15656353--15656715	96	3.8	96	85	2	437	30	12	17	39	1.87
15656353--15656852	47	10.7	47	79	7	418	30	13	17	39	1.88
15656349--15656725	190	2.0	188	82	4	434	29	12	17	39	1.87
15656692--15656907	44	5.0	43	80	5	229	30	15	15	38	1.89
15656692--15656930	88	2.7	88	83	5	261	30	15	15	38	1.88
15658183--15658407	57	3.9	58	83	6	260	47	5	11	36	1.62
15659089--15659129	22	1.9	21	90	5	64	7	7	0	85	0.75
15667584--15667647	28	2.3	28	79	12	78	25	23	17	34	1.96
15670087--15670125	18	2.1	18	85	4	51	58	5	30	5	1.41
15675127--15675163	15	2.3	16	90	9	58	83	5	5	5	0.90
15675998--15676507	48	10.9	48	81	6	473	28	12	19	39	1.88
15676002--15676374	95	3.9	96	85	5	472	27	11	20	39	1.88
15676334--15676562	44	5.2	44	85	1	273	27	12	16	43	1.84
15677817--15678101	60	4.9	59	79	9	300	45	7	11	35	1.67
15679722--15679762	12	3.5	12	83	6	57	70	0	2	26	0.99
15683380--15683447	6	10.8	6	78	13	57	2	13	0	83	0.75
15683386--15683453	10	6.8	10	75	12	59	4	13	0	82	0.82
15683373--15683448	27	2.7	28	82	10	84	5	11	0	82	0.81
15691032--15691070	19	2.1	18	85	4	51	61	5	28	5	1.39
15696315--15696690	48	7.8	48	80	4	373	27	12	21	38	1.90
15696318--15696690	96	3.9	95	84	3	426	27	12	20	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15696658--15696852	44	4.4	43	82	8	155	31	15	15	37	1.89
15698101--15698478	60	6.2	60	85	5	451	48	7	10	33	1.66
15698424--15698510	28	3.1	28	63	12	70	43	6	13	35	1.71
15698426--15698515	30	3.1	29	67	16	80	43	7	13	35	1.73
15700317--15700831	253	2.0	255	86	4	720	31	18	18	31	1.95
15702285--15702320	19	1.9	18	88	5	54	80	5	13	0	0.88
15702688--15702814	17	7.9	15	74	20	62	77	0	14	6	1.00
15702697--15702780	28	3.0	28	84	6	100	80	1	13	4	0.92
15702696--15702797	17	6.2	16	77	17	77	79	0	13	5	0.96
15702700--15702792	49	1.9	48	85	10	127	80	1	12	5	0.93
15702729--15702808	34	2.3	33	83	14	92	80	1	11	7	0.97
15704040--15704089	17	3.0	16	75	11	55	24	16	18	42	1.89
15704000--15704256	34	7.5	34	79	5	232	30	19	13	36	1.90
15704116--15704205	17	5.3	17	64	15	51	36	20	10	33	1.86
15704229--15704262	17	2.0	17	94	0	59	26	23	8	41	1.83
15704235--15704287	17	3.2	16	86	2	61	32	16	7	43	1.76
15704504--15704718	85	2.6	79	80	6	189	18	16	16	48	1.81
15706233--15706524	60	4.9	60	86	4	383	47	5	10	35	1.63
15706521--15706564	23	1.9	23	81	9	54	36	11	6	45	1.67
15707206--15707255	22	2.3	22	78	0	55	20	2	0	78	0.86
15708389--15708777	188	2.1	187	79	7	416	43	8	12	35	1.72
15721426--15721483	16	3.6	15	81	9	62	79	6	1	12	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15721444--15721478	17	1.9	19	88	11	56	80	8	2	8	1.01
15722654--15722687	10	3.3	10	91	4	50	79	2	2	14	0.97
15727842--15727871	10	3.1	10	95	4	53	83	0	6	10	0.81
15728530--15728573	20	2.1	22	83	8	56	61	6	15	15	1.54
15728793--15728912	34	3.3	35	78	12	120	39	15	10	35	1.81
15728793--15728891	35	2.9	35	79	7	112	37	17	10	35	1.83
15729234--15729483	99	2.5	99	85	1	315	24	10	20	44	1.82
15729431--15729531	48	2.1	48	85	7	134	24	10	19	44	1.83
15729349--15729630	147	1.9	147	84	4	372	24	11	21	42	1.85
15729197--15729862	246	2.7	246	84	1	852	24	13	20	41	1.88
15729495--15729723	99	2.3	99	85	0	307	26	15	20	37	1.92
15729798--15729952	76	2.0	76	82	4	188	25	13	18	41	1.87
15729886--15730196	99	3.1	98	81	9	322	22	11	21	43	1.85
15729998--15730232	108	2.2	108	85	3	305	22	12	20	45	1.84
15730367--15730583	50	4.4	49	79	6	222	30	12	17	39	1.87
15730942--15730995	25	2.2	24	84	12	67	79	7	7	5	1.05
15730933--15730973	17	2.5	16	84	7	55	82	7	2	7	0.91
15731839--15731887	24	2.0	26	84	8	66	34	32	18	14	1.91
15731933--15731973	20	2.0	21	85	4	57	31	0	2	65	1.05
15732121--15732154	10	3.3	10	91	4	50	79	2	2	14	0.97
15736507--15736549	16	2.5	18	81	7	54	58	0	2	39	1.11
15736511--15736561	22	2.2	24	82	6	61	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741463--15741538	17	4.5	17	81	0	62	32	13	13	40	1.83
15741546--15741625	18	4.4	18	76	3	72	35	21	7	36	1.82
15741694--15741736	17	2.5	17	80	0	59	27	20	13	37	1.91
15741904--15742022	41	2.9	41	79	2	114	26	15	20	36	1.93
15741922--15742036	41	2.8	41	72	7	99	26	15	19	38	1.92
15742375--15742453	14	5.4	15	75	15	60	70	8	1	18	1.20
15742458--15742490	17	2.0	17	88	5	50	81	15	0	3	0.80
15742894--15742947	23	2.3	23	84	6	65	74	1	3	20	1.07
15744154--15744192	12	3.2	12	78	7	51	69	10	0	20	1.17
15744154--15744198	14	3.5	13	78	9	56	66	11	0	22	1.22
15744170--15744203	14	2.5	14	85	4	52	70	8	0	20	1.13
15744242--15744277	17	2.1	17	89	0	54	47	13	2	36	1.58
15744280--15744360	20	3.6	22	79	17	85	60	9	3	25	1.45
15744215--15744360	21	6.6	22	70	16	77	56	10	3	28	1.50
15744499--15744531	16	2.1	16	94	0	57	69	0	3	27	1.03
15745039--15745286	133	1.9	133	80	9	299	45	10	9	35	1.71
15745095--15745564	132	3.6	133	77	8	428	42	9	9	38	1.70
15746003--15746176	87	2.0	89	95	2	316	50	2	8	39	1.45
15747073--15747106	12	2.8	12	90	0	50	47	0	0	52	1.00
15747709--15747861	77	2.0	76	84	5	200	36	20	9	33	1.85
15751988--15752034	3	16.3	3	78	8	53	65	4	0	29	1.11
15751994--15752034	12	3.6	12	87	9	59	68	4	0	26	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753231--15753321	36	2.5	35	82	5	119	43	17	14	24	1.86
15753303--15753389	34	2.6	34	83	7	115	35	10	21	32	1.87
15759591--15759718	51	2.6	49	86	3	166	30	12	7	49	1.69
15760034--15760081	24	2.0	24	87	4	69	41	10	6	41	1.64
15760110--15760143	13	2.8	12	86	8	50	20	0	0	79	0.73
15760959--15761006	20	2.4	19	86	10	69	10	4	6	79	1.05
15761184--15761578	44	9.1	43	77	5	271	43	14	14	27	1.84
15761252--15761575	87	3.8	86	78	5	298	45	12	15	27	1.81
15762862--15762969	7	15.0	7	72	17	62	15	4	0	79	0.89
15762902--15762958	9	5.5	11	87	12	77	17	0	0	82	0.67
15762904--15762966	9	6.7	9	82	14	74	19	0	0	80	0.70
15762904--15762966	28	2.2	28	91	8	101	19	0	0	80	0.70
15764127--15766456	776	3.0	776	92	0	3910	27	14	21	35	1.93
15772039--15772089	8	6.2	8	80	10	50	7	5	1	84	0.85
15772606--15772644	2	20.0	2	89	5	62	51	2	0	46	1.14
15772606--15772642	19	1.9	19	94	0	65	51	2	0	45	1.15
15772833--15772862	2	15.0	2	100	0	60	50	0	0	50	1.00
15777555--15777635	28	2.9	28	89	5	128	38	11	17	33	1.85
15778943--15778976	17	2.0	17	88	0	50	47	20	2	29	1.65
15779027--15779235	18	11.8	18	69	5	77	31	19	11	37	1.87
15779143--15779184	17	2.5	17	88	0	66	28	19	14	38	1.90
15779284--15779322	19	1.9	19	85	10	51	25	12	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15779382--15779429	21	2.2	21	85	3	60	33	10	22	33	1.88
15779415--15779540	41	3.1	41	73	8	130	26	18	15	38	1.91
15779828--15779930	47	2.2	47	82	6	120	32	6	14	46	1.71
15780475--15780570	24	3.9	24	73	4	84	61	9	2	27	1.38
15780475--15780517	13	3.5	13	78	12	54	65	11	2	20	1.36
15780561--15780596	17	2.1	17	89	0	54	47	13	2	36	1.58
15780599--15780674	20	3.4	22	76	16	75	57	10	3	27	1.50
15780650--15780707	17	3.5	17	70	25	52	63	8	6	20	1.45
15781301--15781760	133	3.5	131	76	10	318	45	10	8	36	1.69
15781506--15781919	132	3.2	131	77	7	341	42	9	8	38	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121