genome.fa.s79.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  104  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17661191--17661251	26	2.3	26	88	5	88	24	26	31	18	1.97
17661208--17661258	26	2.0	26	88	0	75	29	29	25	15	1.96
17665012--17665059	20	2.2	20	82	14	51	50	4	4	41	1.41
17675370--17675427	16	3.5	17	75	15	50	62	6	0	31	1.22
17675802--17675847	5	9.2	5	92	7	76	41	0	0	58	0.98
17675803--17675848	8	5.2	10	73	26	50	43	0	0	56	0.99
17676468--17676515	5	10.2	5	75	20	50	39	0	20	39	1.53
17676466--17676515	18	2.7	18	84	12	66	40	0	20	40	1.52
17676466--17676515	13	4.0	13	75	17	52	40	0	20	40	1.52
17677472--17677574	23	4.4	23	75	8	102	24	6	12	56	1.60
17677564--17677628	31	2.1	31	82	5	78	21	9	10	58	1.59
17678640--17678699	28	2.1	29	87	9	88	21	3	8	66	1.33
17678982--17679106	52	2.4	52	87	0	169	41	8	20	29	1.82
17682077--17682136	29	2.1	29	81	6	68	41	1	5	51	1.33
17683132--17683164	8	4.2	8	84	7	50	54	0	0	45	0.99
17683127--17683156	15	2.0	15	93	0	51	56	0	0	43	0.99
17683121--17683170	23	2.2	23	89	3	75	58	0	0	42	0.98
17684431--17684455	8	3.1	8	100	0	50	36	0	12	52	1.39
17684849--17684882	16	2.1	16	88	0	50	38	0	20	41	1.53
17685452--17685658	60	3.4	61	75	11	199	56	1	0	41	1.15
17685452--17685642	28	7.5	27	69	26	98	56	1	1	41	1.13
17685452--17685659	43	4.5	44	69	22	126	56	1	0	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17685615--17685659	23	1.9	24	90	4	74	57	2	0	40	1.11
17685505--17685661	45	3.6	44	75	13	135	57	1	0	40	1.11
17685753--17685820	26	2.6	25	84	6	100	48	2	0	48	1.16
17685840--17685917	33	2.4	32	81	10	86	56	6	0	37	1.25
17685934--17685974	14	2.9	14	85	0	55	41	4	2	51	1.36
17685934--17685976	15	3.0	15	80	10	54	41	4	2	51	1.35
17686252--17686312	31	2.0	31	84	6	81	49	0	1	49	1.10
17686329--17686380	23	2.3	21	81	12	59	46	0	0	53	1.00
17687230--17687448	111	1.9	114	89	4	347	46	8	3	42	1.49
17688718--17688769	12	4.6	11	80	17	54	57	0	0	42	0.98
17688717--17688765	23	2.1	23	85	7	64	55	0	0	44	0.99
17688717--17688783	22	3.0	24	80	10	61	58	0	0	41	0.98
17705328--17705362	10	3.6	10	84	7	54	74	0	0	25	0.82
17708685--17708718	15	2.3	15	90	10	52	35	32	11	20	1.89
17713105--17713169	33	1.9	35	87	6	98	50	4	0	44	1.22
17713135--17713174	13	3.1	13	85	0	53	55	5	0	40	1.22
17719959--17720006	20	2.3	20	82	10	62	33	2	0	64	1.05
17719959--17720006	21	2.3	20	83	13	62	33	2	0	64	1.05
17719951--17720014	23	2.8	23	79	9	69	32	1	1	64	1.13
17720532--17720565	14	2.4	15	85	14	54	29	0	8	61	1.26
17723952--17724090	72	1.9	71	85	5	190	44	12	17	24	1.84
17724946--17725002	21	2.5	22	83	13	64	42	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17725851--17725900	25	2.0	25	88	0	73	46	10	6	38	1.62
17728351--17728392	22	2.0	21	95	4	75	50	9	14	26	1.73
17728457--17728505	25	2.0	25	84	11	66	53	0	0	46	1.00
17730129--17730168	20	2.0	20	90	5	62	37	5	10	47	1.59
17742275--17742395	59	2.1	59	80	10	133	42	1	0	54	1.16
17742393--17742425	16	2.1	16	94	0	57	33	0	0	66	0.92
17746688--17746716	2	14.5	2	100	0	58	51	0	0	48	1.00
17753298--17753350	26	2.0	26	88	0	79	41	18	1	37	1.62
17760282--17760321	2	20.0	2	94	0	71	52	0	0	47	1.00
17769309--17769349	12	3.5	11	87	12	64	70	0	2	26	0.99
17769847--17769876	12	2.5	12	88	0	51	40	0	0	60	0.97
17770024--17770052	13	2.1	14	93	6	51	44	0	3	51	1.18
17781111--17781177	32	2.1	31	88	2	98	46	13	7	32	1.71
17783045--17783088	17	2.6	18	82	10	56	36	0	2	61	1.09
17783188--17783288	31	3.2	31	72	9	89	52	4	4	37	1.45
17783182--17783252	32	2.3	30	79	13	81	52	4	2	40	1.36
17783535--17783657	32	3.8	32	75	6	115	36	3	5	54	1.40
17784634--17784698	16	3.9	17	72	11	55	43	1	3	52	1.26
17788375--17788467	15	5.6	15	67	20	51	49	6	4	39	1.48
17788377--17788467	35	2.6	34	86	5	112	50	6	4	38	1.48
17790104--17790174	36	2.0	36	85	0	97	47	14	1	36	1.52
17790256--17790307	16	2.9	20	68	26	53	50	9	0	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17791743--17792552	410	2.0	408	85	4	1112	43	8	6	41	1.60
17794364--17794430	9	7.1	9	75	18	57	73	0	5	20	1.04
17803594--17803642	24	2.0	24	84	7	64	40	2	0	57	1.10
17810685--17810714	2	15.0	2	100	0	60	50	0	0	50	1.00
17811325--17811366	12	3.5	12	75	12	50	33	16	33	16	1.92
17811322--17811378	24	2.4	24	96	0	105	36	15	31	15	1.90
17825068--17825094	13	2.1	13	100	0	54	51	0	0	48	1.00
17825111--17825135	4	6.2	4	100	0	50	76	0	0	24	0.80
17828940--17828970	6	5.0	6	92	7	53	35	0	0	64	0.94
17849211--17849256	20	2.1	21	84	11	58	69	4	0	26	1.07
17849357--17849413	30	1.9	30	85	0	78	15	21	28	35	1.94
17850115--17850157	22	1.9	23	85	4	61	18	4	58	18	1.56
17850179--17850225	15	3.0	15	87	12	60	10	0	4	85	0.74
17850183--17850243	17	3.4	17	78	15	61	11	0	6	81	0.85
17850198--17850251	19	2.8	19	86	8	74	12	0	9	77	0.98
17850198--17850282	10	8.1	11	73	24	69	14	1	9	75	1.10
17850182--17850282	18	5.6	18	71	19	77	12	0	8	77	1.05
17850207--17850266	29	2.1	29	87	6	86	15	1	10	73	1.17
17850210--17850282	24	3.4	23	80	19	79	13	1	10	73	1.15
17850182--17850282	11	10.1	10	72	27	74	12	0	8	77	1.05
17850491--17851487	49	20.8	47	82	6	920	36	21	12	29	1.91
17850498--17851487	191	5.2	193	81	7	967	36	21	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17860749--17861040	151	1.9	153	85	2	401	44	6	8	40	1.60
17865478--17865506	6	4.8	6	100	0	58	34	0	0	65	0.93
17869198--17869234	16	2.3	16	100	0	74	43	18	16	21	1.88
17869450--17869491	22	1.9	22	90	0	66	33	11	9	45	1.73
17878385--17878480	48	2.0	48	91	0	156	29	6	32	32	1.82
17878823--17879280	150	3.0	149	79	10	493	43	3	4	48	1.41
17879284--17879388	36	2.9	36	76	0	102	50	4	8	36	1.54
17886955--17887024	37	1.9	36	82	2	86	51	5	5	37	1.50
17894172--17894229	29	2.0	29	93	0	98	48	13	15	22	1.80
17896671--17896712	17	2.4	17	84	11	50	61	2	11	23	1.42
17898459--17898516	24	2.5	24	86	8	75	22	24	15	37	1.93
17900372--17900445	26	2.8	26	81	2	76	33	37	6	21	1.80
17902723--17902750	2	14.0	2	100	0	56	50	0	50	0	1.00
17905309--17905371	32	2.0	32	87	6	92	42	9	11	36	1.73
17906244--17906276	16	2.1	16	88	5	50	48	0	3	48	1.17
17906543--17906584	21	2.0	21	100	0	84	33	14	9	42	1.78
17909700--17909749	24	2.1	24	92	0	82	30	14	36	20	1.91
17909831--17909863	16	2.1	16	94	0	57	33	3	27	36	1.72
17910992--17911034	18	2.4	18	80	0	50	65	2	11	20	1.36
17916299--17916424	26	4.5	26	70	18	76	48	3	3	43	1.40
17921722--17921756	12	2.8	12	95	4	61	31	0	0	68	0.90
17921718--17921777	18	3.6	18	78	8	65	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17924713--17924762	19	2.7	18	79	14	57	80	10	0	10	0.92
17926012--17926332	41	7.8	41	85	1	394	43	19	15	20	1.87
17926031--17926332	82	3.7	82	90	1	444	44	19	14	21	1.86
17926710--17926748	20	2.0	20	89	0	60	28	17	15	38	1.91
17927908--17927967	31	1.9	31	86	6	86	76	3	3	16	1.05
17927908--17927967	26	2.3	27	83	11	72	76	3	3	16	1.05
17927911--17927967	9	6.6	8	78	13	60	77	3	3	15	1.05
17927912--17927959	17	2.8	16	81	12	51	77	2	4	16	1.03
17928306--17928373	31	2.2	31	79	10	77	51	22	10	16	1.74
17928701--17928846	13	11.2	12	66	20	55	71	2	4	21	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121