genome.fa.s79.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  44  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7823542--7823584	18	2.3	19	92	8	70	44	4	6	44	1.52
7823708--7823749	11	4.1	10	80	14	50	35	0	0	64	0.94
7825085--7825147	14	4.8	13	81	12	76	34	1	0	63	1.04
7825080--7825148	6	11.2	6	74	20	54	36	1	0	62	1.04
7825085--7825149	18	3.4	18	82	15	85	36	1	0	61	1.05
7825080--7825148	22	3.3	21	76	15	81	36	1	0	62	1.04
7825147--7825230	43	2.0	40	82	11	98	50	3	5	40	1.44
7827295--7827335	14	2.9	13	86	13	55	31	0	0	68	0.90
7828349--7828434	26	3.2	25	81	16	86	12	6	1	79	0.99
7828395--7828434	9	4.6	9	81	6	55	12	2	0	85	0.71
7828349--7828434	17	4.9	17	71	16	59	12	6	1	79	0.99
7828440--7828848	58	7.0	58	88	6	560	45	7	13	32	1.72
7829454--7829491	15	2.6	14	87	4	58	73	0	0	26	0.83
7831083--7831134	24	2.2	24	82	6	61	50	11	5	32	1.62
7831181--7831232	24	2.2	23	80	10	59	59	15	0	25	1.36
7831234--7831303	33	2.2	32	89	7	106	54	8	5	31	1.54
7831267--7831340	21	3.5	20	70	10	58	56	10	4	28	1.51
7831281--7831326	23	2.0	23	87	4	67	63	6	2	28	1.31
7831213--7831515	55	5.7	55	72	9	234	56	11	5	27	1.56
7831438--7831483	23	2.0	23	91	4	76	63	10	6	19	1.48
7831472--7831546	32	2.3	32	90	0	123	53	12	6	28	1.63
7831511--7831557	20	2.2	22	81	7	62	57	8	4	29	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7831399--7831586	87	2.2	88	78	12	217	55	10	5	28	1.55
7831533--7831596	31	2.1	31	87	0	92	51	10	7	29	1.65
7831649--7831722	24	3.1	23	74	16	71	54	9	4	32	1.52
7832443--7832476	12	2.9	12	95	4	61	70	8	0	20	1.13
7840225--7840276	24	2.2	24	86	6	70	40	17	3	38	1.68
7843055--7843230	44	4.0	44	84	2	212	43	15	13	27	1.84
7843055--7843230	88	2.0	87	86	3	246	43	15	13	27	1.84
7843343--7843392	19	2.7	18	78	6	55	38	18	10	34	1.84
7843709--7843816	44	2.4	45	77	14	125	36	17	10	36	1.84
7843692--7843889	108	1.8	108	80	3	236	35	17	10	36	1.84
7845005--7845068	20	3.4	18	72	16	51	7	15	0	76	1.00
7845417--7845455	13	3.0	13	82	14	53	5	10	0	84	0.76
7845417--7845455	14	2.9	14	85	14	55	5	10	0	84	0.76
7849447--7849476	15	2.0	15	93	0	51	16	0	3	80	0.85
7850647--7850686	12	3.6	11	83	9	55	77	0	2	20	0.88
7854190--7854228	2	19.5	2	83	0	51	46	0	5	48	1.24
7859857--7859888	10	3.0	11	90	9	57	0	9	0	90	0.45
7859937--7860718	44	17.6	44	77	8	547	44	17	11	26	1.83
7860164--7860191	13	2.2	13	100	0	56	57	14	7	21	1.61
7860120--7860234	56	2.0	57	85	5	153	48	18	10	22	1.78
7860034--7860320	143	2.0	143	86	0	405	46	18	10	24	1.80
7859946--7860626	229	3.0	232	76	10	598	44	16	11	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7860177--7860501	43	7.5	44	78	5	207	45	16	11	26	1.82
7860177--7860718	87	6.2	87	80	2	552	44	16	12	27	1.83
7860831--7860880	19	2.7	18	78	6	55	38	18	10	34	1.84
7861198--7861305	44	2.4	45	77	14	125	36	17	10	36	1.84
7861171--7861407	108	2.2	109	77	6	239	35	17	11	35	1.86
7862902--7862932	12	2.6	12	89	0	53	3	6	0	90	0.55
7862910--7862936	14	1.9	14	100	0	54	7	7	0	85	0.75
7866933--7866962	15	2.0	15	93	0	51	16	0	3	80	0.85
7867962--7868076	43	2.7	43	83	2	133	45	17	12	25	1.83
7868125--7868163	6	6.8	6	91	2	55	79	0	0	20	0.73
7872005--7872034	14	2.1	14	93	0	51	30	36	20	13	1.90
7873945--7873977	2	16.5	2	93	0	57	45	0	3	51	1.16
7877333--7877381	22	2.3	22	82	10	57	67	0	4	28	1.09
7877759--7877823	3	22.0	3	75	9	62	67	0	3	29	1.05
7877781--7877811	8	3.8	8	95	4	53	74	0	0	25	0.82
7877764--7877824	20	3.0	20	80	9	70	70	0	3	26	1.02
7879296--7879338	3	14.3	3	100	0	86	67	0	0	32	0.91
7879491--7879551	23	2.7	21	77	10	59	47	34	0	18	1.49
7879539--7879699	28	5.6	28	73	12	114	50	33	0	15	1.44
7879537--7879622	16	5.8	15	78	11	79	48	34	0	16	1.46
7879554--7879692	14	9.7	14	73	14	88	52	30	0	17	1.45
7880016--7880054	16	2.5	16	91	4	62	56	2	10	30	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7880968--7881018	26	2.0	26	84	0	66	29	1	3	64	1.22
7882365--7882428	20	3.3	20	74	20	64	20	3	3	73	1.11
7884504--7884564	21	3.1	19	79	11	68	8	0	13	78	0.95
7884624--7884955	60	5.7	58	81	8	368	44	7	12	35	1.70
7884632--7884955	118	2.8	116	86	6	422	43	7	12	35	1.71
7888439--7888486	18	2.6	18	83	6	51	87	6	6	0	0.67
7889922--7889981	23	2.7	22	84	5	68	38	8	18	35	1.81
7889941--7889981	21	1.9	22	95	5	75	36	9	19	34	1.85
7890613--7890705	42	2.3	42	92	3	154	24	18	23	33	1.97
7890802--7890848	1	47.0	1	91	0	76	95	2	2	0	0.30
7890724--7890952	124	1.8	126	89	2	365	44	10	15	30	1.80
7890724--7890952	123	1.8	124	88	3	354	44	10	15	30	1.80
7892962--7893309	59	5.9	56	84	8	408	43	8	13	34	1.76
7892976--7893309	119	2.8	115	85	8	451	43	8	14	34	1.75
7892973--7893319	58	5.9	57	79	11	328	43	9	13	33	1.76
7897574--7898073	58	8.7	57	85	8	635	44	7	12	36	1.71
7898019--7898045	14	1.9	14	100	0	54	59	11	0	29	1.32
7908391--7908468	9	9.0	8	75	17	59	78	1	7	12	1.02
7908392--7908481	10	9.7	9	73	13	58	78	1	8	11	1.00
7908402--7908479	9	8.8	8	78	16	66	76	1	10	11	1.07
7909850--7909935	43	2.0	44	82	13	106	22	3	4	69	1.22
7910861--7910941	5	15.8	5	74	21	62	13	4	1	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7910857--7910932	40	1.9	40	83	5	100	13	6	1	78	0.99
7910866--7910952	34	2.6	33	84	13	101	12	4	2	80	0.96
7910860--7910933	6	11.8	6	73	13	60	13	5	1	79	0.96
7910861--7910967	28	3.7	27	74	20	85	14	5	1	77	1.03
7910980--7911606	58	10.7	58	86	5	854	43	8	12	35	1.73
7910980--7911606	117	5.3	116	90	4	890	43	8	12	35	1.73
7910980--7911606	176	3.6	173	86	7	838	43	8	12	35	1.73
7911634--7911661	6	4.7	6	100	0	56	14	0	14	71	1.15
7918433--7918710	58	4.7	59	81	7	318	35	13	7	42	1.74
7918435--7918710	117	2.4	116	87	6	396	35	13	7	43	1.73
7918720--7918807	45	2.0	45	84	8	117	73	1	9	15	1.13
7918749--7918789	21	1.9	22	95	5	75	75	0	9	14	1.04
7918725--7918798	18	3.9	18	72	19	62	75	1	6	16	1.08
7918827--7918877	16	3.1	16	78	18	52	76	0	1	21	0.88
7919721--7919778	21	2.8	21	81	5	64	63	6	5	24	1.40
7919748--7919803	22	2.6	22	86	8	71	64	1	5	28	1.26
7919783--7919843	26	2.3	26	83	5	79	63	1	4	29	1.24
7919881--7919942	21	3.2	20	72	18	51	67	0	4	27	1.10
7919885--7919944	15	4.4	14	78	19	56	65	0	5	30	1.14
7919885--7919950	8	9.4	7	73	17	57	65	1	4	28	1.21
7919946--7920023	38	2.1	35	82	15	88	75	2	2	19	1.03
7919959--7920018	17	3.4	17	75	20	52	76	3	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7920203--7920597	42	9.1	42	77	12	354	38	19	17	24	1.92
7920203--7920596	132	3.0	130	90	3	591	38	19	17	24	1.92
7920204--7920590	86	4.5	85	80	7	406	39	18	16	24	1.91
7921577--7921638	22	2.8	22	70	7	54	8	9	1	80	0.97
7921581--7921626	16	2.8	17	80	12	60	10	8	2	78	1.05
7921562--7921645	23	3.8	23	71	16	70	9	13	1	76	1.08
7932038--7932366	58	5.7	56	77	9	297	34	15	7	43	1.74
7932092--7932171	27	3.0	26	71	14	81	38	13	5	42	1.66
7932038--7932352	117	2.7	108	82	11	344	35	15	6	41	1.75
7932405--7932445	21	1.9	22	95	5	75	75	0	9	14	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121