genome.fa.s79.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  34  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6034319--6034423	52	2.0	52	87	3	149	44	8	20	26	1.80
6035228--6035328	52	1.9	53	83	2	132	51	8	16	22	1.72
6036357--6036530	87	2.0	87	93	0	294	44	15	8	31	1.76
6039623--6039656	3	11.3	3	100	0	68	64	0	0	35	0.94
6040818--6040862	20	2.3	21	81	14	60	46	6	0	46	1.29
6042229--6042546	159	2.0	159	96	0	591	32	16	19	31	1.94
6044708--6044733	13	2.0	13	100	0	52	23	0	30	46	1.53
6047164--6047221	18	3.3	18	85	9	75	36	0	1	62	1.06
6052790--6052857	21	3.2	21	85	0	91	29	23	11	35	1.90
6053437--6053469	2	16.5	2	100	0	66	48	0	0	51	1.00
6059730--6059758	14	2.1	14	100	0	58	27	17	6	48	1.72
6064965--6065440	232	2.0	236	92	3	789	49	8	6	35	1.59
6069420--6069458	3	13.0	3	100	0	78	33	0	0	66	0.92
6075489--6075525	19	2.0	18	89	5	56	75	2	8	13	1.13
6076145--6076279	71	1.9	71	84	0	180	36	8	23	31	1.86
6077200--6077685	43	11.2	43	81	3	508	25	11	15	47	1.79
6077200--6077686	131	3.7	128	83	6	552	25	11	15	47	1.79
6077200--6077709	174	2.9	170	79	7	555	25	12	15	46	1.81
6079020--6079069	26	1.9	27	84	8	68	50	2	4	44	1.32
6083714--6083767	26	2.2	25	93	6	92	46	3	20	29	1.68
6085045--6085201	74	2.2	71	84	10	203	45	5	4	45	1.45
6087638--6087697	12	4.7	13	80	19	65	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087643--6087698	22	2.5	22	77	5	60	35	0	0	64	0.94
6087656--6087694	16	2.4	16	82	0	51	35	0	0	64	0.94
6096193--6096473	148	1.9	154	85	6	396	43	4	4	47	1.43
6097398--6097423	13	2.0	13	100	0	52	30	0	0	69	0.89
6099454--6099729	22	12.6	22	65	13	97	53	5	7	34	1.51
6099545--6099574	14	2.1	15	93	6	53	63	6	0	30	1.20
6099641--6099726	11	7.9	11	70	7	59	55	2	6	34	1.39
6100031--6100226	11	17.6	11	63	13	53	52	5	6	36	1.50
6100646--6100706	11	5.5	11	74	14	54	50	9	3	36	1.52
6100022--6100787	22	34.8	22	67	10	188	49	6	7	35	1.58
6100648--6100820	66	2.6	66	79	5	145	46	9	6	36	1.64
6101310--6101446	22	6.2	22	76	6	98	45	8	5	40	1.57
6111247--6111421	72	2.4	72	86	0	233	37	9	6	46	1.61
6111427--6111595	72	2.4	71	81	4	178	42	10	8	39	1.69
6111263--6111561	163	1.8	164	81	0	375	39	10	6	43	1.65
6111601--6111664	30	2.1	30	100	0	128	42	12	0	45	1.42
6111671--6111728	30	1.9	30	96	0	107	37	1	1	58	1.18
6112456--6112509	24	2.2	23	81	18	65	25	5	3	64	1.32
6112560--6112585	3	8.7	3	100	0	52	30	0	0	69	0.89
6113165--6113208	20	2.2	20	95	0	79	38	31	25	4	1.76
6113163--6113280	62	1.9	63	82	5	150	32	29	21	16	1.95
6113226--6113270	20	2.2	20	84	0	54	33	28	22	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6113517--6113558	14	3.1	15	80	19	56	7	42	21	28	1.79
6113517--6113553	13	2.7	14	80	20	51	8	43	24	24	1.81
6113598--6113639	11	3.7	11	93	6	75	14	0	7	78	0.95
6113597--6113640	12	3.8	12	93	6	81	13	0	6	79	0.92
6117493--6117543	8	6.1	8	82	8	57	78	0	15	5	0.93
6117465--6117532	18	3.7	20	74	20	67	75	0	17	7	1.03
6117465--6117532	19	3.7	19	77	13	79	75	0	17	7	1.03
6117465--6117532	28	2.5	27	78	2	73	75	0	17	7	1.03
6118775--6119610	41	20.5	41	92	3	1366	22	17	25	34	1.95
6118777--6119610	163	5.1	163	92	4	1364	23	17	24	34	1.95
6119617--6119719	1	103.0	1	77	0	89	87	5	0	5	0.71
6119889--6119942	24	2.2	23	81	18	65	25	5	3	64	1.32
6119993--6120018	3	8.7	3	100	0	52	30	0	0	69	0.89
6120603--6120645	20	2.2	20	91	0	68	39	30	23	6	1.81
6120664--6120708	20	2.2	20	84	0	54	33	28	22	15	1.95
6120955--6120996	14	3.1	15	80	19	56	7	42	21	28	1.79
6120955--6120991	13	2.7	14	80	20	51	8	43	24	24	1.81
6121041--6121071	12	2.7	12	95	5	55	16	0	6	77	0.97
6121040--6121072	11	2.7	13	86	13	52	15	0	6	78	0.93
6124762--6124812	21	2.3	21	83	10	57	62	5	17	13	1.50
6134887--6134976	42	2.2	41	83	2	108	31	7	8	52	1.61
6139563--6139594	16	1.9	17	93	6	57	6	6	9	78	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6143915--6143968	13	3.9	13	79	16	56	46	0	0	53	1.00
6143923--6143977	28	2.0	26	89	10	83	43	0	0	56	0.99
6143933--6143991	22	2.6	23	73	10	59	37	1	0	61	1.07
6144247--6144298	16	3.1	17	72	8	52	46	1	0	51	1.12
6147098--6147246	75	2.0	73	84	2	190	40	6	12	39	1.70
6150416--6150443	12	2.3	12	100	0	56	42	0	7	50	1.30
6150702--6150731	10	3.1	10	95	4	53	36	0	0	63	0.95
6151246--6151287	2	21.0	2	100	0	84	50	0	0	50	1.00
6151290--6151357	17	3.7	18	69	15	50	55	2	1	39	1.24
6151514--6151565	28	2.0	28	85	11	74	46	5	3	44	1.45
6159061--6159103	2	21.5	2	100	0	86	48	0	51	0	1.00
6159248--6159300	24	2.2	25	89	3	81	30	32	7	30	1.85
6166399--6166430	2	16.0	2	100	0	64	50	0	0	50	1.00
6171000--6171032	2	16.5	2	100	0	66	51	0	0	48	1.00
6180251--6180293	16	2.7	16	88	0	68	53	23	2	20	1.57
6188182--6188210	13	2.2	13	100	0	58	37	24	6	31	1.82
6198764--6198796	10	3.4	10	91	4	50	60	0	15	24	1.35
6198473--6199452	483	2.0	481	84	7	1293	50	6	6	36	1.54
6199646--6199708	30	2.1	31	85	14	87	44	4	6	44	1.50
6199659--6199727	30	2.3	30	80	7	77	37	7	4	50	1.50
6199842--6199891	21	2.5	19	78	15	55	56	4	4	36	1.37
6199918--6199979	28	2.2	30	77	16	69	45	1	1	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6199945--6199985	17	2.4	18	84	15	61	51	0	0	48	1.00
6199945--6199990	17	2.8	17	81	15	60	52	0	0	47	1.00
6212835--6212890	27	2.0	27	86	10	78	44	16	21	17	1.86
6216894--6216986	44	2.2	43	86	3	125	21	7	16	54	1.66
6220664--6220697	3	11.7	3	93	6	61	35	0	0	64	0.94
6221195--6221238	20	2.2	20	88	11	65	54	13	0	31	1.39
6221275--6221336	9	6.7	9	77	3	52	54	4	1	38	1.31
6221284--6221317	11	3.2	10	91	8	50	52	0	2	44	1.16
6222689--6222735	23	2.0	23	87	8	67	36	2	14	46	1.57
6224250--6224334	22	3.5	22	69	27	66	27	14	1	57	1.44
6224232--6224333	51	2.0	51	100	0	204	29	13	1	54	1.50
6224355--6224400	21	2.2	21	88	7	67	63	8	8	19	1.49
6224355--6224418	21	3.0	20	73	24	51	62	10	6	20	1.49
6224594--6224661	19	3.6	19	75	11	59	17	1	32	48	1.56
6224756--6224933	38	4.6	39	74	13	111	19	3	29	47	1.65
6224756--6224843	20	4.6	20	76	8	92	18	3	29	48	1.64
6224794--6224908	39	2.9	38	78	11	101	22	1	28	46	1.62
6224833--6224902	19	3.6	19	80	5	79	21	0	32	45	1.52
6225639--6226220	292	2.0	292	95	0	1058	43	18	11	26	1.84
6227559--6227623	18	3.6	18	72	4	60	75	4	10	9	1.18
6229457--6229489	8	3.9	9	88	11	52	75	0	0	24	0.80
6229457--6229489	17	2.0	16	94	5	57	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6237341--6237403	14	4.7	13	74	25	51	19	3	1	76	1.01
6237341--6237406	13	5.0	12	77	18	69	18	3	1	77	0.98
6249238--6249281	13	3.3	13	84	12	54	81	0	4	13	0.83
6250203--6250249	21	2.2	21	88	0	67	38	10	19	31	1.86
6250691--6250793	40	2.5	41	92	4	165	26	17	13	42	1.86
6251004--6251030	4	6.8	4	100	0	54	22	0	0	77	0.76
6251801--6251828	14	2.0	14	100	0	56	78	0	0	21	0.75
6251855--6251903	25	2.0	25	88	8	73	48	4	6	40	1.47
6256289--6256336	21	2.3	20	72	10	51	54	4	4	37	1.39
6257391--6257521	35	3.7	35	79	3	127	16	15	12	55	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121