genome.fa.s79.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  116  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19911260--19911327	29	2.3	30	82	10	86	32	1	1	64	1.11
19911266--19911357	30	3.2	29	78	9	80	32	4	1	61	1.22
19913752--19913794	22	2.0	21	86	8	61	25	4	18	51	1.66
19919333--19919372	17	2.4	17	86	0	53	62	0	0	37	0.95
19926502--19926559	12	5.0	12	74	19	52	34	1	0	63	1.04
19926498--19926571	34	2.1	35	85	2	96	37	1	0	60	1.05
19926558--19926591	17	1.9	18	88	5	52	55	0	2	41	1.15
19930540--19930568	15	1.9	15	100	0	58	34	0	3	62	1.12
19930540--19930574	16	2.3	15	90	5	52	37	0	2	60	1.12
19931727--19931795	28	2.4	28	85	7	93	46	1	0	52	1.09
19931865--19931921	29	2.0	29	83	10	73	45	5	0	49	1.24
19937625--19937681	27	2.1	27	96	0	105	35	19	22	22	1.96
19941302--19941365	6	10.8	6	75	9	51	35	0	0	64	0.94
19941467--19941500	17	2.0	17	94	0	59	44	0	0	55	0.99
19944754--19944798	24	1.9	23	81	4	54	22	4	8	64	1.40
19945561--19945659	31	3.1	32	77	14	89	46	0	1	52	1.07
19945676--19945722	23	2.0	23	83	0	58	38	0	0	61	0.96
19945601--19945722	57	2.1	57	79	11	133	40	0	0	58	1.04
19948057--19948091	10	3.7	10	88	11	56	28	0	0	71	0.86
19948052--19948093	10	4.4	9	85	14	50	35	0	2	61	1.09
19956552--19956583	12	2.6	13	85	14	50	0	0	28	71	0.86
19956899--19956935	17	2.2	17	95	0	65	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19956899--19956935	8	4.3	9	86	10	51	54	0	0	45	1.00
19956907--19956942	8	4.4	8	89	6	54	47	2	0	50	1.15
19956971--19956999	14	2.0	15	93	6	51	55	3	0	41	1.17
19957052--19957087	13	2.8	13	91	4	56	36	0	0	63	0.94
19959930--19959990	28	2.2	27	80	8	68	49	3	0	47	1.18
19977689--19977741	11	4.6	11	77	13	54	45	0	0	54	0.99
19984015--19984065	8	6.6	8	84	8	52	50	11	0	37	1.39
19984037--19984078	2	20.5	2	85	4	57	50	2	4	42	1.36
19984015--19984065	12	4.4	12	75	9	52	50	11	0	37	1.39
19985117--19985145	13	2.1	14	93	6	51	51	6	13	27	1.66
19985238--19985298	24	2.5	24	83	0	68	55	14	11	18	1.68
19987563--19987593	2	15.5	2	100	0	62	48	0	0	51	1.00
19988938--19988964	2	13.5	2	100	0	54	48	0	0	51	1.00
19992038--19992095	22	2.7	22	82	10	66	41	0	1	56	1.09
19992089--19992132	18	2.4	18	78	14	54	31	0	2	65	1.05
19992273--19992306	15	2.3	15	89	0	50	88	0	11	0	0.52
19994365--19994422	25	2.3	25	76	5	64	32	5	0	62	1.18
19994927--19995633	366	1.9	366	95	0	1261	24	20	13	41	1.89
19996347--19996376	13	2.4	12	89	10	51	90	0	10	0	0.47
20009694--20009728	14	2.5	14	86	13	54	68	0	20	11	1.20
20011160--20011218	30	2.0	30	86	0	82	45	0	1	52	1.10
20011414--20011440	7	3.9	7	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20011393--20011460	35	1.9	35	82	5	84	35	0	0	64	0.94
20012117--20012269	83	1.8	83	94	0	270	49	3	8	39	1.50
20012924--20013015	27	3.2	27	67	14	76	38	13	5	43	1.66
20012923--20013327	56	6.9	57	79	10	404	36	12	6	43	1.69
20012925--20013330	119	3.5	114	80	9	417	36	12	6	44	1.69
20013339--20013501	8	18.4	9	70	19	57	70	1	4	23	1.15
20013339--20013396	6	9.8	6	81	10	66	77	0	3	18	0.91
20013433--20013463	3	10.3	3	100	0	62	67	0	0	32	0.91
20013459--20013500	4	10.5	4	100	0	84	76	0	0	23	0.79
20015403--20015459	16	3.3	16	72	23	53	73	3	3	19	1.12
20015835--20015865	8	3.9	8	91	0	53	6	0	3	90	0.55
20015648--20015904	108	2.4	108	84	2	320	33	16	12	37	1.86
20015835--20015865	16	1.9	16	100	0	62	6	0	3	90	0.55
20015874--20016246	41	9.2	41	87	2	538	37	23	15	23	1.93
20015875--20016245	160	2.3	162	90	2	575	37	22	15	23	1.93
20016216--20016273	30	1.9	30	89	0	89	36	24	13	25	1.92
20017964--20018028	21	3.3	18	77	22	69	12	12	0	75	1.05
20017965--20018028	20	3.2	20	81	12	78	10	12	0	76	1.02
20022607--20023035	59	7.4	56	82	9	454	35	13	7	43	1.72
20022607--20023043	115	3.8	111	80	12	461	36	13	7	42	1.72
20023075--20023141	5	12.8	5	80	13	57	77	0	5	16	0.95
20023078--20023144	6	11.2	6	78	9	57	76	0	5	17	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20023089--20023144	17	3.3	17	80	11	62	75	0	7	17	1.03
20025110--20025160	22	2.3	21	86	10	66	76	1	3	17	1.03
20026924--20026968	24	2.0	22	82	8	54	42	2	2	53	1.25
20036233--20036320	42	2.1	42	83	12	110	44	1	1	53	1.15
20036233--20036334	42	2.4	41	80	15	93	43	0	1	53	1.18
20040995--20041193	94	2.1	94	93	0	337	33	8	20	37	1.83
20041832--20041870	19	2.1	19	95	0	69	35	17	12	33	1.88
20049128--20049172	20	2.2	20	84	7	56	66	2	4	26	1.22
20049141--20049183	21	2.2	19	87	8	59	69	2	2	25	1.12
20049945--20050020	30	2.5	31	81	14	88	34	11	1	52	1.46
20050365--20050518	83	1.9	83	92	0	263	32	16	15	35	1.90
20050555--20050589	3	11.7	3	100	0	70	31	0	0	68	0.90
20051448--20051602	74	2.1	76	84	8	201	45	3	5	44	1.46
20055435--20055509	24	3.1	23	79	11	71	36	2	2	58	1.26
20055565--20055631	28	2.3	29	79	5	73	53	1	0	44	1.09
20055552--20055631	30	2.7	28	76	7	79	52	1	0	46	1.08
20057768--20057800	17	1.9	17	100	0	66	30	6	45	18	1.73
20059344--20059391	23	2.1	23	84	7	62	54	2	2	41	1.24
20059369--20059421	16	3.4	16	77	15	58	56	3	1	37	1.28
20072901--20072935	16	2.2	17	85	15	56	28	0	0	71	0.86
20073404--20073456	22	2.2	24	77	16	56	52	0	1	45	1.11
20073729--20073763	15	2.3	15	90	0	52	31	11	11	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20073874--20073919	15	3.1	15	76	17	51	26	0	10	63	1.27
20075680--20075730	20	2.7	19	88	11	70	50	0	0	49	1.00
20084403--20084459	22	2.6	21	86	8	78	56	7	0	36	1.27
20084661--20084842	91	2.0	91	97	0	346	41	23	10	23	1.86
20095927--20095962	2	18.0	2	100	0	72	50	0	50	0	1.00
20100174--20100517	172	2.0	172	92	0	571	21	11	20	46	1.82
20113607--20113653	2	23.5	2	100	0	94	0	51	0	48	1.00
20120868--20120910	18	2.4	18	77	14	52	69	2	20	6	1.23
20126011--20126036	2	13.0	2	100	0	52	50	0	0	50	1.00
20127801--20127833	9	3.7	9	95	0	57	15	30	54	0	1.41
20129294--20129391	50	2.0	48	82	7	117	51	18	3	27	1.61
20130079--20130121	6	6.8	6	79	10	50	62	2	0	34	1.08
20130079--20130128	26	1.9	26	91	0	82	60	2	0	38	1.09
20131412--20131447	2	18.0	2	100	0	72	50	0	0	50	1.00
20133077--20133103	3	9.0	3	100	0	54	0	0	66	33	0.92
20133102--20133131	3	10.0	3	100	0	60	33	0	66	0	0.92
20133231--20133263	9	3.7	9	95	0	57	15	30	54	0	1.41
20134723--20134820	50	2.0	48	82	7	117	51	18	3	27	1.61
20135402--20135437	19	1.9	18	88	5	54	38	0	0	61	0.96
20135493--20135532	18	2.4	16	83	8	53	67	0	0	32	0.91
20136075--20136114	21	2.0	20	90	5	62	37	2	12	47	1.55
20143939--20144060	65	1.9	65	94	0	217	26	15	5	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20151322--20151369	17	2.8	17	96	3	87	58	10	12	18	1.62
20166966--20167189	123	1.8	123	83	1	297	40	3	5	50	1.44
20168140--20168170	2	15.5	2	100	0	62	0	48	0	51	1.00
20172768--20172808	17	2.4	17	87	4	55	46	0	0	53	1.00
20172778--20172810	17	1.9	17	100	0	66	45	0	0	54	0.99
20180105--20180338	119	2.0	119	93	0	405	41	13	14	30	1.84
20182351--20182386	2	18.0	2	100	0	72	0	50	0	50	1.00
20182847--20182882	18	2.0	18	88	0	54	58	2	0	38	1.13
20182913--20182969	21	2.8	20	77	17	62	66	1	1	29	1.12
20184218--20184269	15	3.5	15	80	12	63	65	5	0	28	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121