genome.fa.s79.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  20  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3632685--3632719	17	2.1	17	88	0	52	65	0	0	34	0.93
3639463--3639496	16	2.1	16	94	0	59	29	0	0	70	0.87
3640463--3640503	16	2.5	17	84	11	50	21	7	0	70	1.11
3640528--3640571	22	2.0	23	86	4	63	70	0	0	29	0.88
3641117--3641221	53	2.0	53	87	7	151	47	9	10	32	1.70
3641628--3641750	32	3.9	32	72	6	106	17	18	15	48	1.81
3641562--3641754	63	3.0	64	75	5	187	18	18	13	49	1.80
3641855--3641936	33	2.5	33	80	2	94	31	18	10	39	1.85
3650047--3650090	21	2.1	21	87	4	63	13	11	0	75	1.06
3652938--3653045	45	2.3	46	75	6	103	21	0	32	45	1.58
3653014--3653065	17	3.1	16	88	5	77	13	0	34	51	1.41
3654525--3654581	27	2.1	28	83	9	73	29	0	1	68	1.00
3654826--3654882	22	2.7	21	72	20	55	35	15	21	28	1.94
3654944--3655030	23	3.9	23	77	4	81	28	17	22	31	1.97
3654993--3655231	110	2.2	110	84	5	299	36	17	22	24	1.94
3655240--3655295	22	2.6	21	73	15	60	26	17	25	30	1.97
3655213--3655295	43	1.9	43	87	0	121	32	16	24	26	1.96
3655102--3655380	152	1.8	154	87	1	418	37	17	21	23	1.94
3654840--3655512	260	2.6	260	84	3	827	37	16	20	25	1.93
3655261--3655729	109	4.3	110	81	5	497	38	15	19	25	1.92
3655692--3655743	21	2.5	20	78	12	59	28	21	25	25	1.99
3655257--3655729	217	2.2	216	83	4	612	38	15	20	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3655708--3655750	21	2.0	21	95	0	77	25	23	25	25	2.00
3655810--3655875	23	2.9	23	77	6	64	30	18	21	30	1.97
3655825--3655882	23	2.5	22	86	2	71	31	20	20	27	1.98
3655576--3655990	130	3.2	131	83	5	498	37	16	20	25	1.93
3655864--3656204	110	3.1	110	82	0	405	38	15	19	26	1.92
3656176--3656269	22	4.3	21	81	10	84	32	20	19	27	1.96
3656248--3656447	88	2.3	88	89	0	301	39	18	21	21	1.92
3656706--3656793	41	2.1	41	87	0	122	38	12	12	36	1.81
3663850--3663950	45	2.2	46	77	5	107	19	0	35	44	1.51
3663928--3663982	17	3.2	17	89	0	83	10	0	34	54	1.36
3665442--3665495	27	2.1	27	83	13	69	33	0	0	66	0.92
3670334--3670383	16	3.3	15	81	16	50	30	2	0	68	1.01
3670334--3670383	15	3.3	14	83	13	55	30	2	0	68	1.01
3670326--3670383	30	1.9	30	83	13	75	31	3	0	65	1.09
3671199--3671235	15	2.4	16	90	9	67	18	18	8	54	1.68
3673144--3673195	27	1.9	27	84	0	68	69	5	1	23	1.20
3673226--3673259	15	2.2	16	94	5	61	64	0	0	35	0.94
3675948--3675990	22	1.9	23	86	13	63	30	6	0	62	1.21
3677285--3677350	27	2.4	28	85	10	91	50	0	0	50	1.00
3682607--3682644	15	2.7	14	80	15	51	0	10	2	86	0.66
3686646--3686676	2	15.5	2	100	0	62	48	0	0	51	1.00
3689016--3689064	24	2.0	24	84	7	64	14	51	4	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3693227--3693269	22	1.9	22	86	13	61	51	0	2	46	1.13
3693185--3693715	224	2.3	228	81	7	616	54	3	6	34	1.44
3695845--3695887	16	2.4	19	81	14	56	37	0	0	62	0.95
3695852--3695889	15	2.6	15	91	4	60	42	0	0	57	0.98
3697183--3697242	31	1.9	31	83	6	77	33	8	10	48	1.67
3700097--3700161	32	2.0	32	82	11	78	53	0	1	44	1.09
3702368--3702434	35	1.9	35	100	0	134	34	20	5	38	1.77
3707167--3707194	12	2.3	12	100	0	56	39	46	0	14	1.44
3709801--3709834	3	11.3	3	87	0	50	70	2	0	26	1.01
3712192--3712240	24	2.0	24	88	0	71	14	48	4	32	1.62
3719090--3719123	18	2.0	17	88	11	52	70	0	2	26	1.01
3720910--3720953	22	2.0	23	82	13	56	40	2	4	52	1.34
3720971--3721010	18	2.2	18	86	8	55	67	0	2	30	1.04
3720971--3721013	20	2.3	18	88	8	59	67	0	2	30	1.03
3724162--3724225	24	2.6	25	85	5	85	42	7	4	45	1.54
3724786--3724843	20	3.1	19	76	13	50	46	13	8	31	1.74
3724810--3724843	18	1.9	17	88	5	50	44	11	5	38	1.65
3725289--3725567	44	6.4	43	78	6	233	47	15	12	24	1.80
3725272--3725522	87	2.9	87	79	6	231	46	15	13	23	1.83
3725561--3725594	15	2.3	15	89	0	50	50	11	5	32	1.63
3725519--3725639	58	2.1	58	89	1	181	48	14	9	28	1.73
3725570--3725604	15	2.3	15	90	5	52	37	20	14	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3725576--3725671	43	2.2	44	84	1	131	47	11	13	27	1.77
3726424--3726581	79	2.0	77	80	9	178	32	24	8	35	1.85
3726460--3726652	78	2.5	79	81	3	210	33	23	6	36	1.81
3728245--3728289	23	2.0	23	91	4	74	55	8	0	35	1.31
3733774--3733829	25	2.2	26	84	9	71	42	7	3	46	1.48
3733924--3733969	22	2.2	20	84	7	56	76	6	2	15	1.09
3737795--3737855	17	3.2	17	70	24	50	22	6	4	65	1.36
3737859--3737901	21	2.0	21	91	8	70	25	9	0	65	1.22
3739053--3739325	141	1.9	141	85	0	375	36	11	21	30	1.89
3740107--3740155	24	2.0	24	84	0	62	32	2	2	63	1.17
3740099--3740161	28	2.2	28	80	5	74	33	1	1	63	1.13
3741727--3741765	18	2.2	18	100	0	78	38	12	17	30	1.88
3742412--3742499	28	3.2	28	69	15	74	64	5	5	23	1.37
3742811--3742847	18	2.1	17	90	5	56	64	8	2	24	1.34
3743412--3743449	15	2.4	16	86	8	51	39	7	5	47	1.55
3746180--3746209	10	3.1	10	95	4	53	36	0	0	63	0.95
3746182--3746211	9	3.2	9	95	4	51	36	0	0	63	0.95
3746620--3746665	18	2.5	18	96	3	83	28	0	0	71	0.86
3747663--3747719	27	2.2	26	81	9	71	31	3	3	61	1.30
3747672--3747727	26	2.1	27	86	3	78	28	5	1	64	1.26
3748195--3748397	7	31.8	6	64	24	55	20	1	31	46	1.59
3749223--3749541	142	2.2	143	79	5	315	45	10	11	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3755261--3755361	10	11.1	9	71	19	50	49	1	5	42	1.38
3755318--3755360	19	2.3	18	81	14	52	46	4	2	46	1.36
3757444--3763260	181	32.5	179	70	12	1699	41	7	8	42	1.64
3757444--3761733	361	11.9	361	73	8	2591	41	7	8	42	1.64
3757484--3761733	181	23.6	181	74	7	2517	41	7	8	42	1.64
3760560--3760606	19	2.7	18	77	12	53	46	4	8	40	1.54
3762071--3762099	14	2.0	15	93	6	51	48	0	0	51	1.00
3761769--3763062	356	3.6	357	77	8	986	40	6	9	42	1.64
3765570--3765608	20	1.9	20	89	5	60	48	0	17	33	1.48
3767802--3767847	24	1.9	24	82	8	58	36	10	10	41	1.75
3768996--3769078	38	2.2	38	87	6	116	26	9	30	33	1.88
3769970--3770043	21	3.6	20	74	7	60	31	29	25	13	1.94
3770900--3771280	178	2.1	180	79	6	398	44	6	8	41	1.59
3771146--3771429	156	1.8	157	84	2	392	46	6	7	40	1.56
3771299--3772166	181	4.8	177	78	8	650	43	5	7	44	1.53
3771277--3772166	361	2.5	356	80	5	932	43	5	6	44	1.53
3775962--3776136	41	4.2	41	80	3	181	50	6	7	35	1.56
3775962--3776136	83	2.1	83	80	5	201	50	6	7	35	1.56
3775996--3776093	21	4.7	21	77	5	74	47	8	9	34	1.65
3776017--3776181	83	2.0	83	79	2	179	50	7	6	35	1.56
3776062--3776181	62	1.9	63	86	8	174	50	7	5	36	1.52
3776049--3776215	62	2.7	62	75	11	169	46	8	6	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3776717--3776858	71	2.0	71	90	0	221	47	11	16	23	1.79
3781935--3781963	14	2.0	15	93	6	51	65	0	0	34	0.93
3785482--3785548	28	2.4	28	82	0	89	56	17	16	8	1.65
3788671--3788709	18	2.1	19	90	4	62	23	7	5	64	1.40
3788555--3788728	83	2.0	87	89	7	268	20	6	13	59	1.56
3790900--3791248	175	2.0	174	98	0	680	39	10	14	35	1.81
3792097--3792146	21	2.5	19	81	12	64	22	4	8	66	1.35
3793592--3794009	144	2.9	143	78	6	412	42	9	8	39	1.68
3795332--3795366	17	1.9	19	88	11	56	54	0	0	45	0.99
3799447--3799483	19	1.9	19	94	0	65	27	0	2	70	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121