genome.fa.s79.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  99  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16882335--16882408	3	24.7	3	83	0	58	66	9	2	21	1.33
16886263--16886305	18	2.3	18	88	4	59	79	2	18	0	0.85
16886252--16886310	30	2.0	30	86	6	84	77	1	18	1	0.93
16886250--16886295	10	4.6	10	81	8	58	78	0	19	2	0.86
16887738--16887862	65	1.9	64	83	4	162	18	22	12	46	1.83
16887738--16887831	33	2.9	32	77	3	98	18	23	12	45	1.83
16887746--16887894	32	4.6	32	75	7	115	16	22	14	45	1.84
16887781--16887918	64	2.2	63	77	11	138	18	23	13	45	1.84
16888409--16888449	19	2.0	21	90	9	68	24	9	0	65	1.22
16889953--16890013	17	3.9	15	74	23	54	21	0	4	73	1.01
16889952--16890008	25	2.3	24	84	6	62	21	0	5	73	1.02
16891178--16891274	27	3.7	26	80	11	101	26	6	12	54	1.61
16891225--16891272	14	3.4	14	82	8	62	29	6	12	52	1.63
16897357--16897502	7	21.1	7	74	8	111	19	2	36	41	1.66
16902122--16902170	24	2.0	24	88	0	71	36	24	10	28	1.88
16903262--16903327	19	3.5	19	85	4	71	18	4	6	71	1.24
16903254--16903338	38	2.2	37	82	12	102	20	4	4	70	1.23
16903274--16903327	19	2.8	19	91	0	90	18	5	5	70	1.27
16903388--16903509	35	3.5	34	73	13	99	27	5	10	56	1.56
16903437--16903483	14	3.3	14	84	3	58	23	8	10	57	1.60
16903446--16903608	34	4.6	36	70	19	114	25	6	11	57	1.58
16903549--16903586	15	2.5	16	83	12	53	23	7	10	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16903557--16903672	13	8.8	13	68	27	61	24	6	14	55	1.62
16903404--16903632	114	2.0	114	83	6	293	25	6	12	55	1.61
16904903--16904932	14	2.2	13	94	5	51	56	0	0	43	0.99
16906105--16906245	64	2.2	62	78	5	149	39	16	13	31	1.87
16910099--16911260	186	6.3	186	86	2	1507	38	11	15	34	1.83
16910137--16911270	371	3.1	369	86	2	1578	38	11	15	35	1.83
16911127--16911348	123	1.8	123	86	2	320	36	12	14	36	1.85
16915246--16915771	174	3.0	174	96	0	946	33	12	15	37	1.86
16919629--16919736	34	3.2	34	81	0	126	40	17	9	32	1.81
16919637--16919774	69	2.0	69	85	1	188	36	21	13	29	1.91
16919653--16919773	34	3.5	34	79	2	134	37	22	11	28	1.89
16920014--16920069	8	7.1	8	88	10	71	55	0	7	37	1.27
16920518--16920542	12	2.1	12	100	0	50	32	0	16	52	1.44
16921513--16921603	45	2.0	46	85	6	123	39	18	7	34	1.80
16924074--16924101	2	14.0	2	100	0	56	50	0	0	50	1.00
16925228--16925272	22	2.0	22	100	0	90	17	8	8	64	1.47
16925231--16925280	22	2.5	19	87	12	66	18	8	10	64	1.48
16927735--16927773	21	1.9	20	89	5	60	56	2	10	30	1.46
16929591--16929627	19	2.0	19	89	5	58	24	37	13	24	1.91
16930068--16930092	1	25.0	1	100	0	50	100	0	0	0	0.00
16930613--16930670	26	2.2	26	81	6	73	29	0	1	68	0.99
16930741--16930784	3	14.7	3	100	0	88	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16930783--16930817	3	11.7	3	100	0	70	34	0	0	65	0.93
16931020--16931044	12	2.1	12	100	0	50	60	0	0	40	0.97
16931316--16931577	8	35.0	8	63	19	68	46	29	0	22	1.57
16931317--16931582	30	8.7	30	76	11	211	46	29	0	22	1.57
16931317--16931575	14	17.3	16	65	20	82	47	30	0	22	1.57
16931405--16931456	23	2.3	23	83	3	61	46	28	0	25	1.53
16931437--16931473	13	2.7	14	95	4	67	54	29	2	13	1.53
16931370--16931550	66	2.8	64	82	5	208	47	30	0	20	1.55
16931437--16931612	61	2.9	61	79	6	173	48	29	1	19	1.59
16931685--16931737	14	3.7	14	72	5	52	52	26	0	20	1.46
16944266--16944603	70	4.9	70	74	5	229	20	18	12	48	1.80
16944432--16944638	35	5.9	35	75	4	157	20	19	12	47	1.81
16944432--16944638	71	3.0	68	77	9	186	20	19	12	47	1.81
16944301--16944605	70	4.4	71	73	9	234	20	19	11	47	1.80
16944468--16944639	69	2.4	72	76	3	172	19	19	13	47	1.82
16944798--16944967	34	5.0	34	75	7	148	22	18	8	49	1.75
16944819--16945142	35	9.4	34	75	9	158	21	17	10	50	1.76
16944801--16944967	68	2.4	68	81	8	196	22	18	8	50	1.74
16944840--16945153	105	3.0	103	74	14	252	21	18	11	49	1.78
16944992--16945188	104	1.9	105	81	3	245	21	17	13	47	1.81
16946544--16946592	11	4.7	11	74	20	52	28	0	0	71	0.86
16947190--16947229	14	2.7	14	88	7	53	50	30	2	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16947236--16947285	21	2.3	21	93	3	82	50	30	0	20	1.49
16947257--16947382	14	8.7	14	69	13	67	49	28	0	21	1.55
16947205--16947398	51	3.8	51	70	15	141	47	30	1	20	1.60
16947256--16947530	58	4.7	58	79	5	275	47	29	1	21	1.60
16947373--16947540	14	11.2	16	70	16	60	45	30	1	21	1.62
16947447--16947601	37	4.2	37	75	12	156	45	30	1	21	1.60
16947463--16947514	14	3.7	14	80	10	61	53	28	0	17	1.44
16947558--16947658	30	3.3	29	75	6	94	47	28	2	20	1.65
16947562--16947683	61	2.0	62	85	4	167	49	27	2	20	1.62
16955963--16956014	21	2.5	20	81	9	59	46	3	23	26	1.69
16961272--16961433	8	20.6	8	66	11	50	50	27	4	17	1.64
16961272--16961324	24	2.2	24	86	0	70	52	24	1	20	1.56
16961381--16961434	16	3.5	15	77	18	58	50	27	3	18	1.64
16964103--16964147	24	2.0	22	83	12	56	64	4	4	26	1.32
16968402--16968550	76	2.0	76	90	0	235	42	14	18	24	1.87
16972258--16972717	146	3.1	147	82	6	542	52	9	18	20	1.72
16974177--16974241	33	2.0	33	82	8	80	33	20	15	30	1.93
16974195--16974266	32	2.2	32	82	7	83	30	12	19	37	1.89
16974394--16974446	23	2.3	22	84	9	70	26	22	15	35	1.93
16974405--16974448	23	1.9	23	95	0	79	25	25	15	34	1.95
16974205--16974478	143	1.9	143	85	1	379	31	19	16	32	1.94
16974679--16974802	22	5.6	22	77	10	92	32	23	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974719--16974841	44	2.8	45	83	10	141	30	25	12	31	1.92
16974761--16974871	22	5.1	22	76	8	111	28	24	15	31	1.95
16974742--16974867	44	2.9	44	81	9	134	30	25	11	31	1.92
16976561--16976636	4	18.8	4	74	24	54	77	0	19	2	0.88
16976587--16976628	9	4.1	10	82	14	50	83	0	14	2	0.75
16976567--16976639	35	2.1	35	82	10	87	78	0	19	2	0.88
16978962--16979030	29	2.3	30	87	2	95	33	1	1	63	1.12
16978953--16979030	29	2.6	29	83	6	93	35	1	1	61	1.12
16992155--16992184	7	4.1	7	91	8	51	33	0	0	66	0.92
16992154--16992185	15	2.1	15	100	0	64	37	0	0	62	0.95
16994275--16994327	22	2.5	21	78	6	52	7	3	7	81	0.99
16997220--16997267	17	2.5	20	81	18	66	39	35	0	25	1.56
16997245--16997278	12	2.8	12	86	13	52	38	35	0	26	1.57
17009671--17010610	109	8.6	109	84	1	1150	20	19	13	46	1.82
17009632--17010610	218	4.5	218	87	1	1282	20	19	13	46	1.82
17010712--17011120	135	3.0	133	85	2	512	23	17	12	46	1.82
17011460--17011494	17	2.0	18	88	5	54	60	0	0	40	0.97
17012240--17012294	27	2.2	24	83	9	65	43	30	7	18	1.77
17012468--17012502	13	2.7	13	81	0	52	31	45	17	5	1.71
17013030--17013087	30	2.0	29	86	3	80	48	32	1	17	1.57
17013029--17013081	16	3.5	15	76	10	54	47	30	1	20	1.61
17013094--17013127	14	2.3	15	90	5	52	52	44	0	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17013214--17013248	12	2.8	12	86	4	52	37	37	0	25	1.57
17019653--17019682	14	2.1	14	93	0	51	50	10	0	40	1.36
17019685--17019724	2	20.0	2	94	0	71	47	2	0	50	1.14
17025378--17025407	4	7.5	4	100	0	60	23	0	0	76	0.78
17025869--17025933	27	2.4	27	94	0	112	15	16	32	35	1.91
17025889--17026389	102	4.9	102	89	0	770	13	15	31	38	1.87
17026156--17026239	27	3.0	27	74	16	89	19	15	32	33	1.93
17026315--17026434	45	2.7	45	85	5	170	11	16	31	40	1.85
17027432--17027457	6	4.3	6	100	0	52	30	0	0	69	0.89
17027688--17027718	14	2.2	14	94	0	53	51	0	3	45	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121