genome.fa.s79.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  71  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12225541--12225588	23	2.1	23	92	7	80	31	0	0	68	0.90
12228743--12228784	8	5.0	8	86	11	57	66	0	0	33	0.92
12228740--12228781	14	3.0	14	89	6	59	66	0	0	33	0.92
12228740--12228781	22	1.9	22	95	0	75	66	0	0	33	0.92
12231583--12231624	22	1.9	22	100	0	84	33	14	35	16	1.89
12235644--12235676	17	2.0	17	88	5	50	30	12	18	39	1.87
12235984--12236093	56	2.0	56	90	0	175	35	11	24	28	1.91
12237131--12237196	27	2.4	29	75	14	68	54	0	3	42	1.15
12245190--12245262	27	2.6	28	80	6	78	61	4	1	32	1.23
12246187--12246234	25	1.9	25	82	0	60	31	4	6	58	1.42
12246446--12246505	25	2.4	26	80	8	79	61	5	3	30	1.33
12247454--12247549	32	3.0	32	74	7	88	45	2	4	47	1.33
12247454--12247549	31	3.0	31	74	10	86	45	2	4	47	1.33
12247540--12247581	18	2.3	19	88	8	61	54	0	0	45	0.99
12247596--12247665	35	2.0	35	88	0	104	38	17	12	31	1.87
12247815--12247851	14	2.5	15	84	16	51	45	0	2	51	1.15
12254749--12254792	22	2.0	23	90	4	72	36	18	13	31	1.90
12257740--12257791	26	2.0	26	84	0	68	57	1	15	25	1.48
12260717--12260775	27	2.2	27	78	6	66	18	5	11	64	1.44
12260898--12260972	24	3.2	24	69	14	75	49	5	4	41	1.44
12260872--12261018	46	3.2	46	83	3	170	49	7	6	36	1.56
12261111--12261177	33	2.0	33	88	0	98	34	10	16	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12261130--12261312	70	2.6	69	76	11	185	30	14	18	37	1.90
12261266--12261338	33	2.2	33	87	4	103	27	13	20	38	1.90
12261420--12261508	31	2.8	31	79	6	90	34	12	15	37	1.85
12261733--12261786	25	2.3	23	81	12	67	3	27	0	68	1.06
12263096--12263195	11	8.7	11	83	5	101	19	6	0	75	1.01
12263101--12263159	17	3.3	18	81	11	77	18	6	0	74	1.03
12263095--12263195	6	17.3	6	85	6	91	18	5	0	75	1.00
12263124--12263224	22	4.9	20	76	20	84	20	5	0	72	1.12
12263838--12263877	19	2.0	20	85	4	55	42	17	15	25	1.88
12264218--12264260	4	10.8	4	89	0	68	20	0	2	76	0.89
12264291--12264351	11	5.6	10	77	12	50	14	4	1	78	0.99
12264278--12264364	9	10.1	8	70	21	52	14	6	1	77	1.04
12264278--12264366	15	5.7	16	72	15	62	15	6	1	76	1.05
12264378--12264713	59	5.7	58	85	3	431	46	5	13	35	1.66
12264357--12264713	58	6.1	58	85	4	441	46	5	12	36	1.63
12264378--12264712	117	2.8	117	90	2	485	46	5	13	35	1.66
12269947--12270408	41	11.0	42	87	3	619	24	15	22	37	1.93
12269947--12270597	169	4.0	166	80	10	747	24	15	22	37	1.93
12270412--12270597	41	4.5	41	88	2	239	23	16	22	37	1.93
12270608--12270637	10	3.1	10	95	4	53	93	6	0	0	0.35
12270607--12270644	15	2.4	16	82	13	51	86	5	2	5	0.76
12270792--12270856	5	11.8	5	84	12	67	20	3	0	76	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12270797--12270856	17	3.5	17	80	13	70	20	3	0	76	0.92
12270791--12270854	28	2.3	28	86	5	85	20	3	0	76	0.92
12270794--12270860	17	4.1	17	81	12	61	20	2	0	76	0.92
12271904--12271942	11	3.7	10	86	10	51	15	0	2	82	0.79
12271986--12272258	59	4.7	57	84	8	336	45	5	12	35	1.66
12272003--12272258	58	4.4	58	85	4	320	45	5	12	35	1.66
12272001--12272258	117	2.2	117	90	1	410	45	5	13	35	1.67
12286358--12286397	5	7.4	5	86	13	53	35	0	0	65	0.93
12286395--12286479	3	28.0	3	77	13	77	29	4	1	64	1.21
12286395--12286479	17	5.4	16	75	19	81	29	4	1	64	1.21
12287260--12287338	3	26.0	3	71	21	58	27	2	3	65	1.22
12287260--12287338	13	6.0	13	74	15	65	27	2	3	65	1.22
12287420--12287452	15	2.3	15	94	5	59	63	6	0	30	1.18
12287464--12287596	59	2.4	56	86	7	173	50	6	11	32	1.62
12290078--12290120	20	2.1	21	82	4	52	48	4	18	27	1.68
12299128--12299560	41	10.3	41	78	8	336	25	12	19	43	1.85
12299142--12299602	170	2.7	169	79	5	489	25	12	18	43	1.85
12299149--12299558	84	4.9	83	74	9	317	25	11	19	43	1.85
12299469--12299577	41	2.7	41	85	2	130	27	14	18	39	1.90
12299614--12299747	40	3.1	43	75	10	132	26	17	17	38	1.92
12299778--12299812	11	3.2	11	92	8	54	82	14	2	0	0.77
12299778--12299811	16	2.1	16	89	10	52	82	14	2	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12299971--12300004	16	2.1	16	94	0	59	32	2	0	64	1.08
12300002--12300114	3	36.7	3	73	18	72	26	4	1	67	1.19
12300013--12300114	28	4.0	25	70	26	72	26	3	1	67	1.18
12300883--12300922	20	2.0	20	90	4	64	17	7	0	75	1.03
12300837--12300925	27	3.3	27	77	10	85	23	3	3	69	1.18
12301008--12301040	15	2.3	15	94	5	59	63	6	0	30	1.18
12301052--12301245	59	3.5	56	78	12	166	46	7	12	33	1.69
12302139--12302181	21	2.0	21	86	8	61	32	2	6	58	1.38
12303002--12303029	9	3.1	9	100	0	56	78	0	0	21	0.75
12302991--12303034	22	2.0	23	86	4	63	75	0	0	25	0.81
12303894--12303953	27	2.1	29	87	6	88	21	1	53	23	1.55
12304008--12304046	18	2.2	18	95	0	69	12	0	12	74	1.08
12304260--12304658	48	8.4	47	83	3	446	36	22	14	27	1.92
12304606--12304721	63	1.9	62	84	10	159	37	23	10	29	1.88
12304665--12305110	48	9.4	49	83	6	528	39	22	11	26	1.88
12304665--12305110	95	4.7	96	83	6	520	39	22	11	26	1.88
12309351--12309394	14	3.1	14	81	15	54	56	2	27	13	1.49
12315897--12315950	12	4.4	12	80	13	56	5	7	5	81	0.98
12316402--12316443	21	2.0	21	86	9	59	30	2	7	59	1.37
12317673--12317698	13	2.0	13	100	0	52	0	38	38	23	1.55
12318142--12318209	29	2.3	29	92	0	109	22	5	51	20	1.68
12318142--12318232	29	3.1	28	83	9	103	21	5	52	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12318291--12318327	17	2.2	17	95	0	65	18	0	2	78	0.87
12319120--12319166	18	2.5	19	89	3	78	87	0	10	2	0.63
12320270--12320561	39	7.5	37	76	6	181	26	10	17	45	1.81
12320423--12320584	80	2.1	79	83	2	200	23	12	17	46	1.82
12335817--12335865	3	16.3	3	95	0	89	32	2	0	65	1.04
12335817--12335905	9	9.9	9	76	13	58	43	1	0	55	1.07
12338294--12338335	17	2.4	17	81	14	50	38	0	0	61	0.96
12338307--12338351	19	2.3	20	88	3	65	40	2	0	57	1.11
12349225--12349290	32	2.1	32	100	0	132	42	9	24	24	1.83
12351333--12351363	14	2.2	14	94	0	53	25	0	3	70	1.02
12351684--12351732	24	2.0	24	88	0	71	61	2	2	34	1.19
12352704--12352733	6	5.0	6	91	0	51	16	20	33	30	1.94
12353177--12353214	18	2.1	19	90	9	62	7	7	5	78	1.07
12353563--12354009	51	8.8	51	81	7	439	38	19	12	29	1.89
12353586--12354015	205	2.1	201	84	7	559	37	19	12	30	1.89
12353586--12354008	101	4.2	99	82	7	480	38	19	12	30	1.89
12375711--12375751	21	2.0	21	95	0	73	41	0	21	36	1.54
12376840--12376886	19	2.5	19	96	0	85	29	12	12	44	1.80
12383220--12383244	11	2.3	11	100	0	50	8	0	0	92	0.40
12384117--12384414	149	2.0	149	84	2	384	28	17	12	41	1.86
12387842--12387889	20	2.4	20	100	0	96	33	6	29	31	1.82
12388185--12388236	26	2.0	25	82	10	61	32	7	5	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12391649--12391989	179	1.9	175	90	2	538	36	18	12	33	1.88
12392040--12392150	55	2.0	55	91	3	179	24	10	7	57	1.57
12401106--12401204	46	2.2	46	87	3	137	38	13	13	35	1.83
12401115--12401218	46	2.3	46	83	3	129	36	15	12	35	1.85
12401165--12401553	206	1.9	204	83	2	510	36	16	10	36	1.83
12401993--12402186	62	3.2	61	78	7	196	37	15	13	32	1.88
12406883--12407033	55	2.7	55	77	2	151	49	12	7	30	1.69
12407091--12407294	54	3.8	57	71	13	153	41	15	18	25	1.89
12419932--12419989	30	1.9	30	85	0	80	51	12	10	25	1.70
12423986--12424025	16	2.5	16	88	8	55	10	2	2	85	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121