genome.fa.s79.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  17  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3124681--3124813	57	2.3	57	81	14	150	34	6	5	53	1.50
3125155--3125298	57	2.5	56	80	15	163	34	11	2	50	1.53
3124545--3125505	473	2.0	468	83	5	1181	33	13	8	44	1.74
3125930--3125968	13	3.0	13	82	10	53	30	2	2	64	1.21
3125526--3127412	870	2.2	871	83	6	2353	32	11	9	46	1.72
3127290--3127470	56	3.3	56	74	12	171	33	6	6	53	1.52
3126556--3127939	470	3.0	466	85	3	1734	32	12	9	45	1.73
3127966--3128002	18	2.2	17	86	13	51	72	2	0	24	0.97
3128718--3129055	60	5.8	58	82	7	418	33	14	8	43	1.76
3129105--3129159	17	3.2	17	73	16	60	74	3	9	12	1.18
3129188--3129221	9	3.7	9	84	7	50	85	0	2	11	0.71
3129181--3129221	19	2.1	20	90	4	66	82	0	2	14	0.76
3129489--3129542	20	2.7	20	76	0	54	29	18	27	24	1.98
3129668--3129719	25	2.1	25	85	7	70	36	17	5	40	1.73
3130200--3130233	3	10.7	3	87	12	50	64	2	0	32	1.08
3130550--3130609	31	1.9	32	82	3	77	66	3	3	26	1.23
3134212--3134262	20	2.5	20	83	0	66	74	7	3	13	1.18
3134239--3134267	13	2.2	13	100	0	58	86	6	0	6	0.72
3134321--3134410	38	2.3	39	86	7	139	24	53	14	7	1.67
3134518--3134543	12	2.2	12	100	0	52	15	53	23	7	1.67
3135892--3135926	13	2.8	13	91	4	54	65	0	0	34	0.93
3135892--3135926	12	2.8	12	91	4	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3135895--3135938	20	2.2	20	84	12	54	65	2	0	31	1.05
3135984--3136360	191	2.0	194	84	4	505	37	12	13	36	1.83
3136792--3136824	15	2.1	16	88	5	50	33	3	0	63	1.10
3145573--3146137	47	12.0	48	83	5	708	26	12	23	37	1.91
3145571--3146140	142	4.0	142	85	5	780	26	12	23	37	1.91
3145950--3146187	48	4.8	49	79	8	225	25	13	23	37	1.91
3145571--3146181	95	6.4	95	85	5	668	26	12	23	36	1.91
3146320--3146398	19	4.2	19	85	3	106	74	3	5	16	1.14
3146296--3146398	38	2.7	38	82	5	120	71	5	5	16	1.25
3146386--3146424	19	2.1	19	85	0	51	82	7	5	5	0.96
3146374--3146424	26	2.0	26	84	7	68	80	5	5	7	1.02
3147344--3147375	13	2.5	13	94	0	55	28	37	25	9	1.87
3147996--3148029	11	2.8	12	91	8	52	64	0	0	35	0.94
3151145--3151361	52	3.9	56	75	11	176	33	7	3	55	1.45
3151219--3151377	56	2.8	57	81	9	171	33	6	5	54	1.49
3151219--3151376	57	2.7	58	82	8	180	32	6	5	55	1.49
3150497--3151763	470	2.7	464	83	3	1551	32	11	8	47	1.70
3158048--3158393	169	2.1	167	83	3	435	34	15	10	39	1.82
3158376--3158468	48	2.0	48	82	6	118	29	10	6	53	1.60
3162442--3162572	52	2.5	54	77	6	135	35	19	9	35	1.85
3166179--3166245	33	2.0	33	97	0	125	22	11	37	28	1.90
3170869--3170924	28	2.0	28	100	0	112	46	7	14	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3178533--3178568	19	1.9	18	88	5	54	80	0	11	8	0.90
3178856--3178899	20	2.3	20	84	7	56	38	2	13	45	1.56
3179144--3179172	13	2.1	14	93	6	51	51	3	0	44	1.18
3179524--3179584	30	2.0	30	96	0	113	39	6	11	42	1.67
3181827--3181874	25	1.9	25	95	0	87	41	8	16	33	1.78
3186186--3186236	17	3.0	17	94	0	84	27	15	11	45	1.81
3195285--3195556	114	2.4	115	75	3	260	34	11	12	41	1.78
3197191--3197410	60	3.7	60	83	8	252	37	9	3	49	1.51
3197230--3197328	30	3.2	32	64	12	89	43	7	3	46	1.46
3197454--3197492	20	1.9	20	84	5	51	76	10	0	12	1.01
3198068--3198098	15	2.1	15	100	0	62	6	6	12	74	1.21
3198481--3198861	44	8.8	44	79	6	341	47	18	10	23	1.80
3198481--3198778	133	2.2	133	85	4	388	47	17	11	23	1.80
3198626--3198909	42	6.6	41	81	5	217	45	19	10	24	1.82
3198496--3198909	44	9.6	42	79	6	215	45	18	10	24	1.81
3198718--3198909	83	2.3	83	80	4	206	44	20	9	24	1.82
3199261--3199395	58	2.3	58	88	2	191	31	15	14	38	1.88
3200525--3200557	11	3.0	11	95	0	57	3	15	0	81	0.80
3200532--3200576	10	4.6	10	83	13	58	6	11	0	82	0.84
3200543--3200580	18	2.2	17	95	4	67	7	10	0	81	0.87
3200529--3200576	11	4.7	11	82	15	59	6	12	0	81	0.87
3206646--3206674	14	2.0	15	93	6	51	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3206658--3206839	57	3.1	57	90	3	274	36	8	2	51	1.47
3206732--3206821	27	3.2	27	64	14	65	38	10	3	47	1.53
3209534--3209587	24	2.3	24	87	12	85	18	7	31	42	1.78
3228824--3228992	85	2.0	85	95	0	302	33	15	18	33	1.92
3231183--3231213	15	2.1	15	100	0	62	22	32	0	45	1.53
3236304--3236339	13	2.8	13	82	0	54	33	2	0	63	1.08
3243506--3243591	10	8.1	10	72	19	59	45	9	3	41	1.53
3243577--3243617	21	2.0	21	90	0	64	43	14	2	39	1.59
3243821--3243919	46	2.1	46	81	7	119	52	9	5	33	1.55
3243875--3243939	21	3.2	19	78	8	67	47	9	10	32	1.70
3244056--3244101	21	2.2	21	84	0	56	45	10	6	36	1.65
3244109--3244157	21	2.3	21	96	0	89	44	20	8	26	1.79
3244237--3244286	21	2.5	20	83	6	66	44	16	6	34	1.72
3244390--3244445	11	5.3	10	78	8	58	46	12	3	37	1.59
3244390--3244564	21	8.4	21	72	9	90	47	12	5	34	1.65
3244450--3244607	42	3.8	41	73	11	133	47	12	8	32	1.70
3244434--3244607	21	8.3	21	72	9	106	47	12	8	32	1.71
3245608--3245663	21	2.7	21	77	5	60	48	7	12	32	1.68
3245743--3245777	15	2.3	15	95	0	61	48	0	5	45	1.26
3245744--3245791	20	2.5	19	80	6	53	50	0	2	47	1.12
3245747--3245797	15	3.2	17	89	8	72	49	0	1	49	1.12
3245782--3245830	20	2.4	21	79	6	55	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3251287--3251349	9	7.2	8	75	21	56	79	0	14	6	0.92
3251287--3251359	18	4.2	18	81	10	71	76	0	16	6	0.99
3251312--3251363	16	3.1	16	76	17	52	71	0	19	9	1.13
3252579--3252620	22	2.0	22	86	9	61	30	7	19	42	1.78
3252762--3252806	18	2.5	18	78	7	56	75	2	0	22	0.91
3254261--3254295	17	2.1	17	88	0	52	60	22	0	17	1.37
3254261--3254326	23	2.8	24	79	9	64	51	22	0	25	1.48
3254324--3254397	14	5.1	14	73	12	60	52	24	1	21	1.54
3254324--3254415	30	3.1	29	70	14	73	48	26	1	23	1.57
3255567--3255597	15	2.1	15	93	0	53	22	0	0	77	0.77
3261073--3261101	12	2.4	12	100	0	58	86	6	0	6	0.72
3262305--3262550	33	7.5	32	80	6	208	30	18	15	36	1.92
3262316--3262550	99	2.4	98	84	3	292	30	18	15	36	1.92
3262305--3262550	66	3.8	64	79	6	235	30	18	15	36	1.92
3263154--3263420	87	3.1	87	84	2	358	20	20	19	38	1.94
3263395--3263444	24	2.1	24	92	0	82	22	14	22	42	1.88
3263510--3263606	39	2.5	38	83	5	115	13	22	18	45	1.84
3263826--3263868	22	2.0	22	90	0	68	79	0	0	20	0.74
3263835--3263870	17	2.1	17	94	0	63	80	0	0	19	0.71
3265300--3265332	17	1.9	17	100	0	66	48	30	0	21	1.50
3265340--3265468	15	8.5	15	71	12	66	44	33	1	20	1.61
3265340--3265468	29	4.2	29	75	11	116	44	33	1	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266631--3266681	21	2.5	20	87	6	75	41	11	11	35	1.78
3267092--3267337	41	6.0	41	84	4	273	24	12	21	41	1.87
3267092--3267314	81	2.7	82	85	3	290	25	11	20	42	1.86
3267092--3267334	83	3.0	82	81	7	269	24	12	20	41	1.87
3268014--3268068	21	2.7	20	69	8	56	69	0	5	25	1.10
3272036--3272132	21	4.6	21	66	10	54	47	12	9	30	1.73
3272379--3272440	22	2.8	22	75	0	61	46	4	3	45	1.40
3272297--3272478	44	4.2	43	73	6	118	41	7	7	44	1.59
3272405--3272482	22	3.5	22	68	6	59	39	7	6	46	1.58
3272486--3272889	22	18.5	22	71	4	170	37	9	5	47	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121