genome.fa.s79.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  8  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137228--1137274	2	24.0	2	95	4	87	48	51	0	0	1.00
1139359--1139388	15	2.0	15	100	0	60	20	40	6	33	1.78
1144194--1144299	21	5.0	21	86	2	115	40	7	12	39	1.71
1144194--1144294	42	2.4	42	88	0	139	39	6	12	40	1.70
1144197--1144313	42	2.8	42	84	3	137	41	7	11	38	1.71
1144224--1144313	21	4.2	21	85	7	119	43	7	11	37	1.69
1144370--1144906	46	11.7	46	86	2	686	37	11	13	37	1.80
1144981--1145103	42	3.0	40	81	10	140	43	16	13	27	1.85
1145402--1145833	41	10.4	41	84	5	521	22	12	20	44	1.85
1145402--1145833	81	5.2	81	84	5	517	22	12	20	44	1.85
1147837--1147872	16	2.3	16	95	4	65	36	0	0	63	0.94
1151630--1151671	14	2.9	14	86	6	57	52	2	0	45	1.13
1151660--1151882	120	1.9	121	87	2	333	39	6	8	44	1.62
1153446--1153471	2	13.0	2	100	0	52	50	0	0	50	1.00
1154032--1154111	6	13.2	6	76	5	72	21	2	1	75	1.00
1154177--1154258	20	3.9	20	71	15	58	28	4	6	60	1.41
1154251--1154292	16	2.5	16	88	7	57	21	2	0	76	0.90
1154251--1154293	17	2.5	18	81	11	54	20	2	0	76	0.89
1154251--1154299	16	3.0	16	85	8	55	20	2	2	75	1.00
1155082--1155113	15	2.1	16	94	5	57	12	3	0	84	0.74
1155158--1155603	59	7.7	58	84	6	487	43	6	13	36	1.70
1155160--1155603	56	7.7	57	84	7	495	43	6	13	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156725--1157239	258	2.0	258	95	0	922	40	17	17	24	1.90
1159783--1159831	9	5.8	9	88	11	77	81	0	8	10	0.87
1159783--1159830	16	2.9	17	88	11	73	81	0	8	10	0.88
1161332--1161413	43	1.9	42	90	7	130	37	9	15	36	1.81
1161706--1162203	41	12.0	41	82	10	502	24	16	22	37	1.93
1161706--1162203	82	6.0	82	87	5	614	24	16	22	37	1.93
1161706--1162203	123	4.0	123	89	5	711	24	16	22	37	1.93
1162381--1162414	11	2.9	11	91	8	50	17	2	0	79	0.86
1162381--1162452	6	12.2	6	71	8	58	19	4	1	75	1.05
1162540--1162579	11	3.5	12	75	25	50	27	5	5	62	1.37
1162540--1162602	22	3.0	20	86	6	72	23	4	6	65	1.36
1164121--1164151	9	3.4	9	100	0	62	29	0	0	70	0.87
1164121--1164251	16	7.8	17	71	10	92	20	3	1	74	1.03
1164184--1164286	6	17.5	6	72	18	83	14	4	0	79	0.94
1164144--1164286	32	4.5	32	77	11	91	18	4	2	75	1.06
1164209--1164291	24	3.2	25	80	19	98	14	6	1	78	1.00
1164195--1164286	37	2.5	35	82	10	96	14	5	1	79	0.96
1164137--1164286	12	11.5	13	66	25	52	18	4	2	75	1.06
1164303--1164630	58	5.7	57	84	4	374	46	5	11	36	1.63
1165582--1165638	29	1.9	30	85	3	80	49	1	14	35	1.53
1165580--1165650	29	2.4	29	78	2	79	47	1	12	38	1.50
1166012--1166101	42	2.2	41	78	6	92	25	24	2	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183015--1183128	40	2.8	40	93	0	192	22	21	18	36	1.95
1185485--1185520	4	9.0	4	93	0	54	50	30	0	19	1.48
1185681--1185790	21	5.3	20	67	14	53	35	7	11	45	1.69
1185764--1185817	22	2.5	22	81	3	65	38	5	5	50	1.49
1185757--1185817	21	2.9	21	80	2	68	36	6	8	49	1.59
1185921--1185963	21	2.1	21	83	8	54	41	2	0	55	1.12
1186028--1186201	44	4.0	44	79	3	125	37	8	6	46	1.61
1186049--1186211	22	7.4	22	77	0	155	38	9	7	44	1.64
1186100--1186179	11	7.3	11	67	5	54	38	11	5	45	1.62
1186290--1186379	44	2.0	44	82	4	110	38	13	2	45	1.56
1186290--1186425	22	6.2	22	73	14	84	36	13	3	47	1.60
1186307--1186425	44	2.7	44	80	7	127	36	11	4	47	1.59
1186439--1186478	22	1.9	21	85	10	55	52	15	0	32	1.43
1186496--1186800	22	13.8	22	70	13	137	36	10	6	46	1.64
1186496--1186738	44	5.5	44	74	16	166	37	9	6	46	1.63
1187225--1187250	9	2.9	9	100	0	52	34	0	7	57	1.27
1187247--1187337	21	4.3	22	80	6	107	27	5	1	65	1.21
1187251--1187334	43	2.0	43	85	2	116	28	5	1	64	1.24
1187212--1187342	22	6.0	20	76	13	68	28	5	2	64	1.28
1188107--1188139	17	1.9	17	88	11	50	24	0	0	75	0.80
1203570--1203631	22	2.8	22	82	0	79	35	9	6	48	1.62
1203741--1203833	44	2.1	44	82	4	107	44	6	2	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203777--1203833	22	2.6	22	82	0	69	42	5	1	50	1.35
1203777--1203900	22	5.8	21	70	11	65	37	4	7	50	1.51
1204229--1204439	104	2.0	105	94	0	370	42	12	9	35	1.76
1205871--1205918	17	3.1	16	82	8	55	45	4	0	50	1.21
1206891--1207570	57	11.7	57	87	3	939	35	13	7	44	1.71
1207583--1207624	22	1.9	22	85	9	59	71	2	11	14	1.24
1207606--1207673	15	4.4	15	71	14	57	76	1	7	14	1.07
1207606--1207664	21	2.9	21	78	16	61	76	1	6	15	1.07
1207606--1207729	47	2.7	46	75	9	110	71	3	4	20	1.16
1207693--1207733	13	3.2	12	86	10	55	75	2	0	21	0.92
1207701--1207732	17	1.9	16	93	6	55	81	3	0	15	0.82
1208587--1208632	18	2.5	19	82	13	60	63	6	8	21	1.46
1208681--1208760	20	3.9	21	72	16	69	66	6	2	25	1.28
1208755--1208796	15	2.7	16	85	7	59	80	4	2	11	0.95
1208755--1208800	16	2.9	16	87	6	67	80	4	2	13	0.95
1208955--1209000	9	5.2	9	92	2	67	0	0	13	86	0.56
1209008--1209220	41	5.1	41	86	3	259	37	21	17	23	1.94
1209442--1209615	55	3.4	55	68	27	173	33	15	13	37	1.86
1209475--1209665	43	4.1	44	71	23	142	34	15	12	37	1.85
1209419--1209659	98	2.4	98	95	0	428	33	15	13	37	1.86
1209584--1209666	44	1.9	42	88	9	123	36	14	10	38	1.81
1209850--1209908	22	2.7	22	81	7	66	33	20	8	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210992--1211024	16	2.1	16	88	11	50	9	18	0	72	1.10
1214915--1215308	59	6.7	59	84	5	498	35	13	7	44	1.71
1214915--1215307	175	2.2	176	89	4	580	35	13	7	44	1.71
1215323--1215364	22	1.9	22	85	9	59	71	2	11	14	1.24
1216269--1216314	18	2.5	19	82	13	60	63	6	8	21	1.46
1216434--1216524	12	7.4	12	69	21	64	73	3	2	20	1.08
1220150--1220201	2	27.0	2	92	7	90	50	0	0	50	1.00
1225408--1225445	2	19.0	2	100	0	76	0	50	0	50	1.00
1226820--1226845	2	13.0	2	100	0	52	50	0	0	50	1.00
1228457--1228571	40	2.9	40	90	0	185	22	23	18	35	1.95
1229565--1229617	25	2.1	25	100	0	106	30	18	3	47	1.67
1230537--1230575	12	3.2	12	81	0	51	48	35	0	15	1.45
1230820--1230873	22	2.5	22	87	3	74	40	5	5	48	1.50
1230813--1230873	21	2.8	22	82	5	79	37	6	8	47	1.59
1231084--1231214	44	3.0	44	78	2	111	39	7	6	46	1.57
1231145--1231339	22	9.0	22	71	5	110	39	8	7	44	1.63
1231156--1231232	11	7.0	11	69	5	57	38	11	3	45	1.59
1231158--1231265	44	2.5	44	82	0	135	37	11	6	44	1.66
1231345--1231481	22	6.2	22	76	11	111	36	13	2	47	1.57
1231362--1231481	44	2.7	44	83	7	138	36	11	3	48	1.56
1231551--1231800	22	11.3	22	71	11	136	36	10	6	46	1.65
1231551--1231793	44	5.5	44	74	16	166	36	10	6	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232276--1232301	9	2.9	9	100	0	52	34	0	7	57	1.27
1232298--1232387	21	4.3	21	82	4	110	27	5	1	65	1.22
1232263--1232392	21	6.0	20	76	13	68	28	5	2	63	1.28
1233184--1233216	17	1.9	17	88	11	50	24	0	0	75	0.80
1244985--1245099	40	2.9	40	92	0	185	23	20	18	37	1.94
1247091--1247129	2	19.5	2	94	0	69	51	46	0	2	1.14
1247091--1247136	12	3.8	12	94	0	65	50	43	0	6	1.28
1247380--1247433	22	2.5	22	87	3	74	44	5	1	48	1.37
1247642--1247812	22	7.8	22	77	3	121	39	8	5	47	1.56
1247715--1247841	11	11.6	11	72	5	96	39	10	4	45	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121