genome.fa.s79.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  9  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1247708--1247842	33	4.1	33	76	4	130	39	9	4	46	1.57
1247712--1247842	44	3.0	43	79	5	129	39	9	4	45	1.58
1247663--1247877	22	9.8	22	76	4	112	40	8	5	44	1.59
1247901--1247992	22	4.2	20	76	15	76	39	9	3	47	1.53
1247907--1248018	44	2.5	44	82	7	138	38	10	3	47	1.56
1247980--1248017	19	2.0	19	85	10	51	34	10	2	52	1.50
1248089--1248389	22	13.8	22	69	13	124	34	11	5	47	1.65
1248089--1248283	44	4.5	44	77	11	179	34	10	6	48	1.63
1248792--1248826	18	1.9	18	94	0	61	34	0	0	65	0.93
1248824--1248931	3	35.3	3	72	18	64	27	3	1	66	1.19
1248828--1248933	22	4.8	23	82	11	116	27	4	1	66	1.22
1249766--1249815	12	4.0	13	78	17	52	24	0	2	74	0.93
1249833--1249863	6	5.3	6	92	7	55	29	0	0	70	0.87
1249833--1249863	11	2.7	12	90	10	55	29	0	0	70	0.87
1249833--1249867	17	2.1	16	94	5	61	25	0	0	74	0.82
1249910--1250079	55	3.0	54	70	14	128	51	5	10	32	1.58
1249910--1250128	115	1.9	115	83	7	280	49	4	12	33	1.61
1260797--1260839	9	4.9	9	82	5	52	83	0	6	9	0.80
1260823--1260856	13	2.6	13	90	9	52	76	0	17	5	0.98
1261848--1262183	41	8.0	41	72	10	223	26	12	19	41	1.87
1261848--1262251	125	3.1	127	83	6	392	26	12	18	43	1.85
1262036--1262276	45	5.5	44	77	4	220	25	13	19	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261849--1262272	131	3.3	129	83	6	413	26	12	18	42	1.86
1262510--1262617	3	35.0	3	72	20	64	27	3	1	66	1.19
1262502--1262534	16	2.1	16	88	5	50	30	3	0	66	1.06
1262513--1262619	44	2.5	43	80	11	130	27	4	1	66	1.22
1262513--1262619	20	5.0	21	76	15	105	27	4	1	66	1.22
1262895--1262939	24	1.9	23	90	4	72	13	2	26	57	1.48
1263610--1263705	49	1.9	50	84	14	128	39	7	13	39	1.72
1263719--1263913	71	2.9	67	74	12	198	48	6	10	34	1.63
1263720--1263927	66	3.1	65	72	16	179	50	6	10	33	1.62
1264614--1264687	22	3.4	22	72	9	53	41	10	5	41	1.63
1265500--1265533	12	2.8	12	95	0	59	41	0	0	58	0.98
1267076--1267124	23	2.1	23	88	7	73	16	0	8	75	1.03
1267278--1267896	47	12.9	49	91	3	944	31	27	12	28	1.93
1267278--1267896	96	6.4	97	91	4	965	31	27	12	28	1.93
1278956--1279000	17	2.6	17	80	10	56	8	0	8	82	0.85
1279713--1279746	12	2.8	12	91	8	52	35	0	0	64	0.94
1280257--1280295	17	2.2	17	86	9	51	79	0	0	20	0.73
1280553--1280640	42	2.1	42	95	2	160	31	6	5	55	1.50
1281574--1281660	44	2.0	44	81	0	102	36	9	6	47	1.62
1281869--1281912	22	2.0	22	81	0	52	36	4	6	52	1.49
1286146--1286562	216	1.9	215	91	0	681	23	9	33	33	1.87
1291014--1291349	59	5.8	58	85	4	414	35	13	9	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291381--1291441	6	10.5	6	77	7	63	81	1	4	11	0.90
1291381--1291441	17	3.5	17	84	2	59	81	1	4	11	0.90
1292374--1292421	22	2.1	24	88	7	73	58	4	8	29	1.46
1292532--1292572	17	2.4	17	91	4	64	70	0	0	29	0.87
1292533--1292569	6	6.5	6	81	12	51	70	0	0	29	0.88
1295909--1296220	48	6.4	49	85	5	373	29	10	21	39	1.87
1295912--1296220	98	3.2	99	87	4	432	29	10	21	39	1.87
1295909--1296221	146	2.1	145	84	5	407	29	10	21	38	1.87
1296155--1296292	73	1.9	71	83	5	179	29	6	21	42	1.78
1296276--1296374	52	2.0	50	82	11	123	31	11	20	37	1.87
1296567--1296634	28	2.4	28	80	0	82	27	22	16	33	1.95
1297780--1297825	20	2.1	21	84	11	58	39	0	2	58	1.10
1302016--1302093	40	2.0	40	97	0	147	23	20	16	39	1.92
1303646--1303676	6	5.2	6	96	0	53	61	0	0	38	0.96
1306013--1306037	3	8.3	3	100	0	50	68	0	0	32	0.90
1308292--1308371	40	2.0	40	92	2	115	25	20	17	37	1.94
1312577--1312653	40	1.9	40	94	2	127	23	18	15	42	1.88
1313326--1313363	2	19.5	2	94	5	69	0	47	0	52	1.00
1315658--1315696	2	19.0	2	89	5	60	46	2	2	48	1.29
1315722--1315754	17	1.9	17	88	11	50	51	0	0	48	1.00
1317490--1317567	40	2.0	40	89	0	120	20	20	16	42	1.89
1317952--1317983	12	2.6	13	85	14	50	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322103--1322135	2	16.5	2	93	0	57	51	0	3	45	1.16
1322779--1323056	119	2.3	119	91	0	441	33	14	7	44	1.74
1322770--1323072	59	5.1	59	85	4	396	32	13	8	45	1.74
1323514--1323559	20	2.3	20	88	3	67	26	21	26	26	2.00
1323612--1323681	30	2.3	31	85	9	99	27	24	22	25	2.00
1323630--1323693	31	2.1	30	82	2	74	28	21	20	29	1.98
1324009--1324117	42	2.5	44	77	7	116	61	6	7	24	1.46
1324100--1324278	3	58.3	3	69	22	65	64	6	1	28	1.25
1324330--1324369	20	2.0	21	90	5	64	17	27	30	25	1.97
1329287--1329341	29	1.9	28	82	10	67	9	25	14	50	1.72
1329236--1329379	74	1.9	74	91	0	234	9	28	12	49	1.72
1329844--1330039	41	4.8	41	83	4	245	42	12	19	25	1.87
1329844--1330039	80	2.4	81	90	4	306	42	12	19	25	1.87
1342367--1342513	74	2.0	74	86	5	208	10	25	15	48	1.77
1345411--1345467	28	2.0	29	86	3	80	50	3	8	36	1.50
1351532--1351564	2	16.5	2	100	0	66	48	0	0	51	1.00
1356521--1356545	12	2.1	12	100	0	50	44	0	0	56	0.99
1356544--1356588	8	5.8	8	86	2	65	40	0	0	60	0.97
1356547--1356603	16	3.7	15	85	2	60	45	0	0	54	0.99
1357283--1357316	2	17.0	2	100	0	68	50	0	0	50	1.00
1362107--1362131	11	2.3	11	100	0	50	92	8	0	0	0.40
1364134--1364177	3	14.7	3	95	0	79	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364879--1364933	26	2.2	24	79	17	60	60	0	1	38	1.08
1364985--1365028	13	3.2	14	78	15	56	61	0	0	38	0.96
1365083--1365135	23	2.3	23	80	0	61	50	0	0	49	1.00
1366070--1366106	15	2.4	16	82	8	51	40	2	0	56	1.13
1366483--1366511	10	2.7	11	89	10	51	41	0	0	58	0.98
1367080--1367140	23	2.7	23	69	23	56	40	0	3	55	1.16
1367194--1367246	15	3.5	15	78	14	56	24	1	1	71	1.06
1367210--1367250	16	2.8	16	85	14	61	24	4	0	70	1.06
1367282--1367324	22	2.0	22	86	9	61	37	0	4	58	1.19
1367329--1367354	2	13.0	2	100	0	52	50	0	0	50	1.00
1374590--1374846	129	2.0	129	93	1	444	21	19	30	29	1.97
1381619--1381668	24	2.1	25	88	7	77	26	24	14	36	1.93
1381930--1381961	15	2.1	15	94	0	55	71	6	9	12	1.29
1384628--1384688	9	6.7	9	78	14	54	19	3	3	73	1.11
1384711--1384776	25	2.7	24	77	11	62	31	0	6	62	1.20
1384722--1384782	29	2.1	30	81	9	72	34	0	6	59	1.24
1385178--1385226	25	1.9	25	87	4	71	26	4	14	55	1.57
1385732--1385774	21	2.1	21	86	4	61	13	6	2	76	1.08
1385797--1385879	6	13.7	6	74	15	64	15	4	1	78	0.98
1385797--1385868	17	4.4	17	70	19	64	15	4	1	79	0.96
1385797--1385879	28	3.0	26	77	20	80	15	4	1	78	0.98
1385837--1385879	14	3.1	14	90	9	63	18	2	0	79	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385728--1385878	17	8.9	16	66	23	53	17	5	3	74	1.14
1385907--1386085	58	3.1	56	82	8	225	45	7	12	33	1.71
1388559--1388616	17	3.4	17	83	7	73	15	3	1	79	0.95
1388576--1388631	21	2.7	20	75	10	58	17	7	0	75	1.03
1388671--1388759	43	2.1	42	85	10	119	46	10	12	31	1.75
1388636--1388918	103	2.5	111	82	12	323	45	9	12	32	1.73
1388727--1388918	56	3.2	59	83	13	241	44	9	11	33	1.74
1391009--1391050	22	1.9	22	90	0	66	28	21	9	40	1.84
1394610--1394658	24	2.0	24	100	0	98	22	40	12	24	1.88
1395324--1395377	27	2.0	27	85	0	72	33	1	9	55	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121